bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_2023_orf2 Length=178 Score E Sequences producing significant alignments: (Bits) Value Hs22067818 31.2 1.3 At1g27880 30.4 1.9 7300571 30.4 2.2 Hs18552811 29.6 3.3 Hs20549382 29.3 4.6 > Hs22067818 Length=605 Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 0/23 (0%) Query 113 LNCCWKLARGQAPAHRPPHPPLG 135 CCW + Q P PPH PLG Sbjct 539 FGCCWNMRVTQRPTQSPPHSPLG 561 > At1g27880 Length=941 Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 16/73 (21%) Query 60 SSSSSSAAAAGPPGHSAAAKPPRLAASAANLGGSGSRKSSQDSWGVQTALHFHLNCCWKL 119 S S S +A PP S + PP+L + A ++ + +S S Sbjct 5 SDSDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSS----------------R 48 Query 120 ARGQAPAHRPPHP 132 ++ +AP H PP+P Sbjct 49 SKPKAPTHPPPNP 61 > 7300571 Length=815 Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 0/39 (0%) Query 54 SSSSSSSSSSSSAAAAGPPGHSAAAKPPRLAASAANLGG 92 + +++ S S ++ AA P HSAA P + A SA+ L G Sbjct 95 TRDTATGSGSGASTAASTPLHSAATTPVKEAKSASRLKG 133 > Hs18552811 Length=180 Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 23/86 (26%) Query 86 SAANLGGSGSRKSSQDSWGVQTALHFHLNCCWKLARGQAPAHRPPHPPLGHPQKSVEISF 145 + N GGS K+ + W +CC +LA + PAH H + SV++S Sbjct 82 ESKNQGGSARIKAKHEDW----------DCCRQLATWKKPAHGRGM----HKEMSVQVSD 127 Query 146 ALFG-FPRPQTPRL--------LPQW 162 + RPQ PRL LP W Sbjct 128 GITQPTLRPQLPRLHGPGSMLRLPTW 153 > Hs20549382 Length=435 Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 0/48 (0%) Query 1 FLFGEKSAKEGERGWRAVNSCCSAAAAAFRLAPRLRRCSAPGRRRRRR 48 + GEK A E +A++ C + RL P R CS+ G+ R Sbjct 1 MIKGEKRAAEETDSQKAIDRCQDLLSGVQRLFPEQRACSSRGKHGDER 48 Lambda K H 0.317 0.128 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2779358582 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40