bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1973_orf6
Length=119
Score E
Sequences producing significant alignments: (Bits) Value
Hs20556682 38.1 0.004
Hs17484313 32.3 0.23
Hs22057544 30.0 1.0
Hs14777335 29.6 1.3
Hs16418479 29.3 2.1
CE23964 28.9 2.3
Hs5729982 28.5 3.2
Hs22055706 27.7 5.0
7291503 27.7 5.3
Hs7304921 27.3 7.2
CE27113 26.9 8.8
> Hs20556682
Length=395
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query 7 CKVIGRWLRRAGGAFRARRRRASLVQVLSAAAAAEAESCGILAIRRRCCAELLRNANSSN 66
CKV + G + R R S V+ A A LA+ C R ++S+
Sbjct 26 CKVC---FEKFGHRQQRRPRNLSCGHVVCLACVAALAHPRTLALECPFCRRACRGCDTSD 82
Query 67 CFCIFAHISPALGSVLSPAPAAGRSAPAAPAG 98
C + H+ LGS L +PAA R+AP+AP
Sbjct 83 CLPVL-HLIELLGSALRQSPAAHRAAPSAPGA 113
> Hs17484313
Length=586
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query 63 NSSNCFCIFAH-----ISPALGSVLSPAPAAGRSAPAAPA 97
+SS+ +C++A+ PAL VLSP GR+AP APA
Sbjct 397 DSSSSWCLWANGCGEASVPALCPVLSPWVGGGRAAPGAPA 436
> Hs22057544
Length=801
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query 73 HISPALGSVLSPAPAAGRSAPAAPAGKGR---FLQSIPSTKPKQ 113
H S A S+LSP PA+ SA AG G+ FL+ + T Q
Sbjct 715 HQSNAHSSILSPGPASDASADERKAGAGKRVVFLEPLKDTAAGQ 758
> Hs14777335
Length=795
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query 77 ALGSVLSP-APAAGRSAPAAPAGKGRFLQSIPSTKPKQMT 115
+LG L+ APAA + P G GR LQ+ P T+P + T
Sbjct 331 SLGPTLTTEAPAAAQPGKQGPPGTGRCLQA-PGTEPGEQT 369
> Hs16418479
Length=2724
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 0/21 (0%)
Query 79 GSVLSPAPAAGRSAPAAPAGK 99
GSVLSP P GR AA AG+
Sbjct 169 GSVLSPPPGLGRCLKAAAAGE 189
> CE23964
Length=106
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 77 ALGSVLSPAPAAGRSAPAAPAGKGRFLQSIPS 108
+G+ +SP+ G P P GKG F+Q +P+
Sbjct 62 VIGTKMSPSARFGWGPPNTPTGKGSFVQPLPN 93
> Hs5729982
Length=713
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Query 48 LAIRRRCCA--------------ELLRNANSSNCFCIFAHISPALGSVLSPAPAAGRSAP 93
L+ RRCCA +++N N+S I SP L + A SAP
Sbjct 378 LSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSG---IQTEWSPPLTMLFLCATKFSASAP 434
Query 94 AAPAGKGRFLQSIPSTKPK 112
++ FL S PS+ PK
Sbjct 435 SSSTDITSFLSSDPSSLPK 453
> Hs22055706
Length=735
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query 13 WLRRAGGAFRARRR-RASLVQVLSAAAAAEAESCGILAIRRRCCAELLRNANSSNCFCIF 71
W + G R + R +++ S + + G + RRCC E L CF F
Sbjct 56 WRQTQGFDLRGQHRCGTNIIPGASQTLISLGSNLGCMVEARRCCPEALGKLFPGLCFLCF 115
Query 72 AHISPALGSVLSPAPAAGRSAPAAPAGK-GRFLQSI 106
+G+V+ A G+ AA G+ +FL+ +
Sbjct 116 LVTYALVGAVVFSAIEDGQVLVAADDGEFEKFLEEL 151
> 7291503
Length=1714
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query 61 NANSSNCFCIFAHISPALGSVLSPAPAAGRSAPAAPAGKGRFLQSIPSTKP 111
+A+ +N F A PA+ SV A G + PA PA S P+ KP
Sbjct 528 SASGANAFGGMALNKPAIASVTPRTAAPGSTVPATPA-------SAPANKP 571
> Hs7304921
Length=1878
Score = 27.3 bits (59), Expect = 7.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 0/32 (0%)
Query 82 LSPAPAAGRSAPAAPAGKGRFLQSIPSTKPKQ 113
L PAPAA P+ +G+G + P P+Q
Sbjct 17 LPPAPAASGLKPSPSSGEGLYTNGSPMNFPQQ 48
> CE27113
Length=429
Score = 26.9 bits (58), Expect = 8.8, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 22/93 (23%)
Query 4 EYICKVIGRWLRRAGGAFRARRRRASLVQVLSAAAAAEAESCGILAIRRRCCAELLR--- 60
+Y+C+ + RWL++ G A R E CG+ ++ C +L R
Sbjct 192 DYLCEALQRWLKQLTGTVDAEHR------------FDLPEECGVSSVN---CLDLARELE 236
Query 61 ----NANSSNCFCIFAHISPALGSVLSPAPAAG 89
+ + S F H G++L P ++G
Sbjct 237 FLRAHISLSKSPVTFCHNDLQEGNILLPKASSG 269
Lambda K H
0.326 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164469306
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40