bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_1902_orf3 Length=180 Score E Sequences producing significant alignments: (Bits) Value YMR221c 37.7 0.013 At5g16370 28.5 7.3 Hs22044885 28.5 8.0 Hs22052419 28.1 8.8 > YMR221c Length=504 Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%) Query 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116 NW P F + Y + +CQL P + H + + V+ GL + Sbjct 177 NWFPTLNVSRFFTLYLIVPVFILACQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227 Query 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169 NG+L G G +Q R L A+EREE + P +++ + KL++KS Sbjct 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283 > At5g16370 Length=552 Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 0/26 (0%) Query 40 DVTCRRARSYRLHEIIHRGSSDINWI 65 DV R SY ++IHRG D WI Sbjct 154 DVADRTKFSYTYDDLIHRGDLDFKWI 179 > Hs22044885 Length=209 Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 16/80 (20%) Query 101 RSVLVKPCGRMFG--LRQNGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKET 158 R V ++ CG MFG LR G RG L Q RL + + ++ GP+ +++ T Sbjct 140 RCVKIQECGMMFGWLLRATGWRARGFL--------QSSFRLWDSKYDAQKGGPQVVFRGT 191 Query 159 KFFVFKLERKSDYSQLKFVE 178 LE + D S + V+ Sbjct 192 ------LEFQEDTSGILAVD 205 > Hs22052419 Length=95 Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 0/42 (0%) Query 32 LDPAPQGLDVTCRRARSYRLHEIIHRGSSDINWIPFLSFYEA 73 L+P+P G T RL++++ R +++ W F+ FY++ Sbjct 48 LNPSPDGEAYTLASRPPVRLNDVMLRLVTELRWQKFVMFYDS 89 Lambda K H 0.326 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2806646388 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40