bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1902_orf1
Length=159
Score E
Sequences producing significant alignments: (Bits) Value
CE03641 32.0 0.49
Hs22057567 30.4 1.3
At2g04990 29.6 2.4
Hs5174521 29.6 2.8
Hs20551810 28.9 3.8
CE04958_1 28.1 8.2
> CE03641
Length=1322
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 0/56 (0%)
Query 94 SDDDSSEANGASSKSRNNEPLAPKQPPQPGSGVPVPSVFQVPSENVPRPVLLPTRA 149
SDD E ++SK R+ L P Q P + P+ S Q PS P P A
Sbjct 304 SDDVKIEDTPSASKRRSRWDLTPSQTPNVAAATPLHSGLQTPSFTPSHPSQTPIGA 359
> Hs22057567
Length=1470
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query 17 LGALGPAAFLGRSAARSPAVEGAPAAAAAALASGAATARRGRSFRRYSFTLLFPVFVSLL 76
L LGPA +GR +PA+ AP L +GA A++ R + L P++ L
Sbjct 1332 LDGLGPAQLVGRQTLATPAM--APYVKVYLLENGACIAKKKTRIARKT---LDPLYQQSL 1386
Query 77 V 77
V
Sbjct 1387 V 1387
> At2g04990
Length=535
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
Query 79 TIAYAVAETSSNAPSSDDDSSEANGASSKSRNNEPLAPKQP 119
T AY + ++N DDD+ N +N+PL P++P
Sbjct 96 TNAYVNVDDAANEDDGDDDNLPQNMQDDDDDDNQPLPPEEP 136
> Hs5174521
Length=625
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query 1 FHAADMTSPSCTLHPALGALGPAAFLGRSAARSPAVEGAPAAAAAALASGAATARRG--R 58
FH++ P+ P GA A GR+ R EGAP AAL A R R
Sbjct 46 FHSSPALQPAADHKPGPGARAEDAAEGRARRRE---EGAPGDPEAALEDNLARIRENHER 102
Query 59 SFRRYSFTL 67
+ R TL
Sbjct 103 ALREAKETL 111
> Hs20551810
Length=653
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query 1 FHAADMTSPSCTLHPALGALGPAAFLGRSAARSPAVEGAPAAAAAALASGAATARRG--R 58
FH++ P+ P GA A GR+ R EGAP AAL A R R
Sbjct 74 FHSSPALQPAADHKPGPGARAEDAAEGRARRRE---EGAPGDPEAALEDNLARIRENHER 130
Query 59 SFRRYSFTL 67
+ R TL
Sbjct 131 ALREAKETL 139
> CE04958_1
Length=611
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query 44 AAALASGAATARR-GRSFRRYSFTLLFPVFVSLLVSTIAYAVAETSSNAPSSDDDSSEAN 102
++AL GA AR+ G+ F+ + +L ++ +S+ P+ + S +A+
Sbjct 226 SSALLGGAQIARQMGKHFKNRTDQILL-------------EISFQTSSFPTMSESSEDAS 272
Query 103 GASSKSRNNEPLAPKQPPQPGSGVP-VPSVFQVPS 136
S + PK+ P P + +P +P +P+
Sbjct 273 TISPMINSFNNFLPKKTPYPSTSIPAIPECGSMPN 307
Lambda K H
0.312 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2136300674
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40