bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: kyva
           112,920 sequences; 47,500,486 total letters



Query=  Eten_1799_orf3
Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  YLR040c                                                             28.5    3.4
  CE05741                                                             27.7    6.0


> YLR040c
Length=224

 Score = 28.5 bits (62),  Expect = 3.4, Method: Composition-based stats.
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 0/16 (0%)

Query  40   QSLPFQQFQTLLTLFP  55
            QS PF QFQT +T FP
Sbjct  102  QSFPFTQFQTFITAFP  117


> CE05741
Length=580

 Score = 27.7 bits (60),  Expect = 6.0, Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 0/24 (0%)

Query  4   GDRSGPQQQQKPPTPITENRGKRP  27
           G R+  +++Q+PPT  TE R K+P
Sbjct  48  GTRNKLKKKQRPPTENTEGRAKKP  71



Lambda     K      H
   0.312    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1184950242


  Database: kyva
    Posted date:  Jul 3, 2009  9:03 AM
  Number of letters in database: 47,500,486
  Number of sequences in database:  112,920



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40