bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1775_orf2
Length=103
Score E
Sequences producing significant alignments: (Bits) Value
Hs18582545 30.0 1.00
Hs5902072 29.3 1.8
YJL089w 28.5 3.1
Hs17454125 28.1 3.8
7296040 28.1 3.9
CE14828 28.1 4.1
At4g02570 27.3 7.4
At2g13020 27.3 7.9
> Hs18582545
Length=133
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 0/62 (0%)
Query 28 AGVAALRRPAAFWCFRIFSSFWPFKTEFKPITPFRSLFTFHFNSRSSLKPLSIPRSRRRR 87
V +R+PA + S+FW F P TP + H N + S + S+ ++
Sbjct 27 CDVCTVRKPAFLLLSNLGSAFWNFSALIFPHTPLTATTYHHHNPKQSKQTESLNKNLHLG 86
Query 88 RR 89
+R
Sbjct 87 KR 88
> Hs5902072
Length=390
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query 48 FWPFKTEFKPITPFRSLFTFHFNSRSSL--KPLSIP 81
FWP K +K I R +FHF S + K L IP
Sbjct 200 FWPNKNTYKSIQMMRQYTSFHFASLEDVQAKVLEIP 235
> YJL089w
Length=829
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query 35 RPAAFWCFRIFSSFWPFKTEFKPITPFRSLFTFHFNSRSSLKPLSIPR 82
R FWCF+ SS+W P + T F + S+ L IPR
Sbjct 364 RIVTFWCFQFLSSWWSLIQGL----PKSNFLTEEFQPK-SISVLEIPR 406
> Hs17454125
Length=1849
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 54 EFKPITPFRSLFTFHFNSRSSLKPLSI 80
E KP L FH NS+S+L+ +S+
Sbjct 703 EIKPAESLGQLLLFHLNSKSALQRISV 729
> 7296040
Length=1201
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query 55 FKPITPFRSLFTFHFNSRSSL--KPLSIPRSRRRRRRSSSI 93
F PI P+R+ T H S+ L K + IP S R +S+SI
Sbjct 1040 FLPIPPWRNCNTSHIPSKFCLCHKQIPIPESNRVVTKSASI 1080
> CE14828
Length=211
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 0/23 (0%)
Query 34 RRPAAFWCFRIFSSFWPFKTEFK 56
RP+ WC R+F F KT+ +
Sbjct 48 NRPSGGWCMRVFEGFNAAKTDAE 70
> At4g02570
Length=676
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 0/40 (0%)
Query 41 CFRIFSSFWPFKTEFKPITPFRSLFTFHFNSRSSLKPLSI 80
C +F F+ KT+ + +T SL T H N + K + +
Sbjct 469 CVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIEL 508
> At2g13020
Length=930
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query 40 WCFRIFSSFWPFKTEFKP---ITPFRSLF 65
W ++++ + W +KT FK TPF L+
Sbjct 389 WSYKLYDALWAYKTAFKTPLGTTPFHLLY 417
Lambda K H
0.338 0.146 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1177719780
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40