bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1775_orf1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
At3g17360 33.5 0.11
CE17984 31.6 0.40
YKL105c 31.2 0.49
CE05087 29.6 1.2
Hs15011904 29.3 1.9
CE05086 28.9 2.3
Hs21362016 28.5 3.1
Hs19923661 28.1 4.2
CE07905 28.1 4.6
> At3g17360
Length=2008
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query 54 RTSNLS-SIPKNSNSNSSSNSSSSSSSSSPAQNGCSCSRR---RPGQRFAAEFGGK 105
R N S S PK N N S S +S+ S+P +NG S G RF FGG+
Sbjct 78 RAGNSSDSNPKIVNRNGKSRSEPNSAQSTPTRNGARVSLGGGCATGARFLQSFGGR 133
> CE17984
Length=442
Score = 31.6 bits (70), Expect = 0.40, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query 20 FKFNSRSSRVPVPVLIPSLSRVCLANWNWLCNSNRTSNLSSIPKNSNSNSSS 71
+ FNS S + VP ++ L CL WN S + + +SS+P N NS +
Sbjct 221 YLFNSSISDI-VPCIL-LLIVTCLLVWNLFKTSKKKAKMSSVPNNRNSRGKT 270
> YKL105c
Length=1132
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query 39 SRVCLANWNWLCNSNRTSNLSSIPKNSNSNSSSNSSSSSSSSSPAQNGCSCSRRRPGQRF 98
SR+ L N N S RTS S+P + N+S+NS+ A + R
Sbjct 62 SRMLLMNGNVRQYSKRTS---SLPNQGHKNTSNNSAGRRQHR--AHEDAETTFR------ 110
Query 99 AAEFGGKRSKKWQNCSSSSSSRSQ 122
EFGGK+S K N SSS+ S+
Sbjct 111 --EFGGKQSSKVLNISSSTGQNSK 132
> CE05087
Length=78
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 0/46 (0%)
Query 59 SSIPKNSNSNSSSNSSSSSSSSSPAQNGCSCSRRRPGQRFAAEFGG 104
+++P+ N+ + + S SSS++S+PA + PG R AA FGG
Sbjct 6 ATMPQQQNNFAQTLSQSSSTASAPAPTSAPVTTPAPGSRGAALFGG 51
> Hs15011904
Length=5430
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query 66 NSNSSSNSSSSSSSSSPAQNGCSCSR-------RRPGQRFAAEFGGKRSKK 109
+S+ +S + +S+SSSPA G +R RPG R + G + S +
Sbjct 5319 HSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAGSRASSR 5369
> CE05086
Length=175
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 0/46 (0%)
Query 59 SSIPKNSNSNSSSNSSSSSSSSSPAQNGCSCSRRRPGQRFAAEFGG 104
+++P+ N+ + + S SSS++S+PA + PG R AA FGG
Sbjct 103 ATMPQQQNNFAQTLSQSSSTASAPAPTSAPVTTPAPGSRGAALFGG 148
> Hs21362016
Length=715
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 0/34 (0%)
Query 13 IPPPPPPFKFNSRSSRVPVPVLIPSLSRVCLANW 46
I PPP FKF R+ + + +L SL V L W
Sbjct 276 ITKPPPNFKFAFRAMVLDLELLNSSLEEVSLVEW 309
> Hs19923661
Length=853
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query 60 SIPKNSNSNSSSNSSSSSSSSSPAQN-----GCSCSRRRP 94
S P+N +N SNSS ++++ PA++ G + S+ RP
Sbjct 363 SEPRNGGTNEESNSSGNTNTDPPAEDSQKSSGANTSKDRP 402
> CE07905
Length=1228
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query 13 IPPPPPPFKF--NSRSSRVPVPVLIPSLSR 40
+PPP PP + N++ + P PV +P +S+
Sbjct 737 VPPPEPPVDYEGNAKENAAPSPVPVPKISQ 766
Lambda K H
0.311 0.121 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1187579072
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40