bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1711_orf2
Length=186
Score E
Sequences producing significant alignments: (Bits) Value
Hs22060075 30.0 2.5
7293530 30.0 3.0
7290928_1 29.6 3.3
7300091 29.6 3.9
CE18829 29.3 5.4
Hs17477159 28.5 7.6
> Hs22060075
Length=1069
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query 11 EAAVSAGGLPGSRVVG--PPSFIKTSKAANSSSKSFNGSRSSAGAA--STGGTSGKAGGG 66
E + +AG LPG V PSF+ + A SSS+ F R +AG G G+ GG
Sbjct 833 EQSAAAGVLPGRNNVQELQPSFLCFTPAIGSSSREFCRKRHTAGLVPPPAGQCDGRGAGG 892
Query 67 MS 68
M+
Sbjct 893 MA 894
> 7293530
Length=1150
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 0/69 (0%)
Query 20 PGSRVVGPPSFIKTSKAANSSSKSFNGSRSSAGAASTGGTSGKAGGGMSASSLLEALSSE 79
PG R PP + S+ F R G+ G G GG+ SS +
Sbjct 701 PGYRSHPPPLMTLPVQPPGGYSRGFPHKRLPYGSGRDGAALGARDGGLPGSSTFLKKHTH 760
Query 80 VILVSPADS 88
LVSP +
Sbjct 761 APLVSPTQT 769
> 7290928_1
Length=1276
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 0/33 (0%)
Query 39 SSSKSFNGSRSSAGAASTGGTSGKAGGGMSASS 71
+ S +F +R AG ASTG SG+ GG S ++
Sbjct 1132 TPSSTFMTNRQMAGVASTGRMSGQVVGGSSGTA 1164
> 7300091
Length=1861
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
Query 44 FNGSRSSAGAASTGGTSGKAGGGMSASSLLEAL 76
FNG + + + G A GGMS ++++E L
Sbjct 1805 FNGGKDKGAESGSSAVQGTASGGMSMNTIIENL 1837
> CE18829
Length=1579
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query 37 ANSSSKSFNGSRSSAGAASTGGTSGKAGGGMSASSLLEALSSEVILVSPADSVFFSTPTK 96
N S+ S N S++++ A+ GT K GG + ++ ++ S+ I DS+ +P
Sbjct 1285 GNESTGS-NSSKNASRRANVTGTGRKRGGAGTKTTKRKSGGSK-ISDDEGDSMDVKSPAV 1342
Query 97 GALSSRRGASSRSSLEDTRAITVPSP 122
S+RG ED +P P
Sbjct 1343 KKTRSKRGEYDLPDEEDEEMEVIPLP 1368
> Hs17477159
Length=566
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query 89 VFFSTPTKGALSSRRGASSRSSLEDTRAITVPSPVSFPNAAGIGETGR--EGNSSCHPSL 146
V+FS P R ++R S + R + P+P P A G+ GR +G C SL
Sbjct 219 VYFSPP--------RAQTTRPSRQLKRPPSSPTPTFRPGALGLAAQGRAQQGRERCRGSL 270
Query 147 SSP 149
P
Sbjct 271 RPP 273
Lambda K H
0.307 0.122 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3022542264
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40