bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1636_orf1
Length=108
Score E
Sequences producing significant alignments: (Bits) Value
At1g58350 30.0 1.1
At4g38940 28.5 3.0
CE23568 27.7 5.9
Hs22048336_1 27.3 6.4
CE27472 27.3 6.8
CE08708 26.9 9.6
> At1g58350
Length=794
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query 15 NSAATSSFSACAALSCFWRELQRCSSSRRSVVASPRVLLSSSSLLLEALLLLAAAVGRTK 74
NS S SA F + L +S+ + +V+ + LL + +LLE + L+ AVG+T
Sbjct 227 NSKNVSGSSA----QSFKKALGLLASADKKLVSFVKALLGARGILLEEMQRLSKAVGQTI 282
Query 75 DL 76
DL
Sbjct 283 DL 284
> At4g38940
Length=370
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query 30 CFWRELQRCSSSRRSVVASPRVLLSSSSL-LLEALLLLAAAVGRTKDLLLFPLFRLAERN 88
C++ L + S RS+VASP + S E L +A + +T D+ F L R
Sbjct 39 CYYPTLSQVSRRFRSLVASPEIYKRRSFFGCTEQCLYIAISKDQTSDIHWFTLCRKPNGQ 98
Query 89 ACSGIS 94
SG +
Sbjct 99 QFSGTT 104
> CE23568
Length=215
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query 48 SPRVLLSSSSLLLEALLLLAAAVGRTKD--LLLFP--LFRLAERNACSGISKLSLDGKNS 103
SPR L + + L + ++LL AA G ++ +L+FP + + + C+G++ LSL +
Sbjct 40 SPRDL--AQAYLADVIVLLLAAFGTARNLPILIFPSVIVKFICFSLCAGVAMLSLSETSI 97
Query 104 NHGSK 108
N +K
Sbjct 98 NMKTK 102
> Hs22048336_1
Length=355
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query 32 WRELQRCSSSRRSVVASPRVLL--SSSSLLLEALLL-------LAAAVGRTKDLLLFPLF 82
RE SSSR+S+ R+LL + L + ++L LAA +G+ DLL FP+
Sbjct 179 QREAPGTSSSRKSLKTPRRILLIKNMDPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVK 238
Query 83 RL 84
+L
Sbjct 239 QL 240
> CE27472
Length=1334
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query 11 IHCFNSAATSSFSACAALSCFWRELQR--CSSSRRSVVASPRVLLSSSSLLLEALLLLAA 68
+ CF A + S C+AL C R LQR C S+ + +++LLL AL L A
Sbjct 331 LKCF--AISDSMVKCSALQCLHRALQRQPCDSA---------LPTETNALLLTALRQLGA 379
Query 69 AVGRTKDLLLFPLFRLAERNAC 90
+V + + + LAE + C
Sbjct 380 SVTDVT-VTAYWMQALAEAHVC 400
> CE08708
Length=378
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query 31 FWRELQRCSSSRRSVVASPRVLLSSSSLLLEALLLLAAAVGRTKDLLLFPL 81
FW E R + R+ V+ + + LL+E L L A + + LLFP+
Sbjct 188 FWYECVRAINGRQYVMVISK-FYRHNKLLIELLETLNALISKISPCLLFPI 237
Lambda K H
0.322 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1160781780
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40