bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_0672_orf6 Length=52 Score E Sequences producing significant alignments: (Bits) Value 7302229 30.8 0.68 At1g06550 29.3 1.8 > 7302229 Length=948 Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 0/32 (0%) Query 4 QKMQRQKKKMAAESEVKGRSSKDNNRRLTETQ 35 Q+++ Q K A +E+K +SS NRRL ETQ Sbjct 61 QRLRDQIKSWIASAEIKDKSSLLENRRLIETQ 92 > At1g06550 Length=374 Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 0/22 (0%) Query 23 SSKDNNRRLTETQKGVKRQSPT 44 +SKD N +T KG+KR SPT Sbjct 258 ASKDGNEWITPVIKGLKRSSPT 279 Lambda K H 0.299 0.110 0.264 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1158678716 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40