bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0562_orf3
Length=103
Score E
Sequences producing significant alignments: (Bits) Value
7291428 27.7 5.0
7296061 26.9 9.2
> 7291428
Length=1991
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 28/30 (93%), Gaps = 0/30 (0%)
Query 57 EQKQQQQRQQQQQRQQQQQRQQQQPQQQQQ 86
EQ++++QR+++Q+ ++Q++R+Q++ +Q+++
Sbjct 1422 EQREKEQREKEQREKEQREREQREKEQREK 1451
> 7296061
Length=1316
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query 60 QQQQRQQQQQRQQQQQRQQQQPQQQQ----QRFAGKPSRGCGPPRVI 102
+ +R QQ+ R QQ Q QP QQQ Q + + R PP V+
Sbjct 1023 LRNERHQQRHRNDQQWEQPYQPAQQQHQRLQYYMPQTERCTSPPDVV 1069
Lambda K H
0.312 0.114 0.306
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1177719780
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40