bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0507_orf1
Length=100
Score E
Sequences producing significant alignments: (Bits) Value
Hs20544189_1 30.0 1.1
At5g27680 29.6 1.3
CE20906 28.9 2.6
SPAC22E12.09c 28.9 2.6
CE18872 28.1 4.5
7291221_1 28.1 4.7
> Hs20544189_1
Length=4057
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query 32 RMQHSRCI----YTAESCGARVCAVQTPAACSPR 61
R ++ RC+ YT E CG R C P CS R
Sbjct 289 RCENGRCVCNPGYTGEDCGVRSC----PRGCSQR 318
> At5g27680
Length=819
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 0/74 (0%)
Query 6 KRGRVYIHQESGRSHKTKEDRKALCMRMQHSRCIYTAESCGARVCAVQTPAACSPRPVHL 65
KR + G S R+AL + H C+ A + + Q PA + + V +
Sbjct 154 KRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVV 213
Query 66 LLPTTSLKAQKCFK 79
+ P SL +C K
Sbjct 214 ISPLISLMHDQCLK 227
> CE20906
Length=501
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 0/28 (0%)
Query 8 GRVYIHQESGRSHKTKEDRKALCMRMQH 35
R IH +S R + K DRKAL R++H
Sbjct 323 NRYDIHDKSKRDAREKRDRKALRHRVRH 350
> SPAC22E12.09c
Length=709
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query 49 VCAVQTPAACSPRPVHLLLPTTSLKAQKCFKNI-----YFVLFTFVY 90
V A TP + S P+ +LP T + ++ I +F+LF F++
Sbjct 637 VSATATPTSTSHIPIPTVLPPTQPVLEPSYREIVAFITFFLLFAFIF 683
> CE18872
Length=681
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query 4 VAKRGRVYIHQESGRSHKTKEDRKALCMRMQHSRCIYTAESCGARVCAVQTPAACSPRPV 63
+A R +I E+G K D+ A +++ S R C + C PRP
Sbjct 347 IAMRPHTFI--EAGIKAMRKCDKCATALKLATSMKCRDCHQVVHRSCCNKLHLPCIPRPK 404
Query 64 HLLLPTTSLKAQK 76
++ P ++L+ K
Sbjct 405 TMMTPKSALRGAK 417
> 7291221_1
Length=569
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query 8 GRVYIHQESGRSHKTKEDRKALC--MRMQHSRCIYTAESCG 46
G+++I E G+S K + +AL R HS IYT E CG
Sbjct 445 GKLFICSECGKSCK---NSRALIGHKRYSHSNVIYTCEQCG 482
Lambda K H
0.332 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1187882580
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40