bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0469_orf1
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
At3g21530 29.6 1.4
7297904 29.3 1.9
Hs15011904 28.9 2.6
7294023 28.9 2.8
CE18930 27.7 5.7
CE05506 27.7 6.2
CE25088 27.3 7.5
> At3g21530
Length=471
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 19 KGRMLSESKEFATPSAPATAIAAAAGVRGVSRSGSRL 55
KG+ +SKEFA P IA V+G + G+R+
Sbjct 356 KGKGYLDSKEFAGECEPVVIIAKGQNVQGTCKYGTRV 392
> 7297904
Length=571
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
Query 25 ESKEFATPSAPATAIAAAAGVRGVSRSGSRLLDRQRATS 63
E E TPSAPAT ++A G +G RS L R+ A +
Sbjct 385 EKVETVTPSAPATKVSALKGEKGNLRSVRGLRQRRDAEA 423
> Hs15011904
Length=5430
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 25/116 (21%)
Query 30 ATPSAPATAIAAAAGVRGVSRSGSRL-------------LDRQRATSRAGCSIGCSTGHQ 76
+ PS+PAT A+G + + SGS+L L + S + S G T
Sbjct 5289 SMPSSPATP---ASGTKVIPSSGSKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRA 5345
Query 77 ---------YSRSSSCCGWKQHKQSSSAARGTSLLQTAAACLHPGEGHVAAARTAS 123
SR+ S G + + S A LL+T +AC E A + S
Sbjct 5346 DPKKSASRPGSRAGSRAGSRASSRRGSDASDFDLLETQSACSDTSESSAAGGQGNS 5401
> 7294023
Length=569
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 36 ATAIAAAAGVRGVSRSGSRLLDRQR 60
ATA+ A GV RS S L+DR+R
Sbjct 226 ATAVGVATGVYSTLRSASHLIDRRR 250
> CE18930
Length=492
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query 83 CCGWKQHKQSSSAARGTSLLQTAAACLHPGEGH-VAAARTASAAE 126
CC W Q + T L QT C PG +A RTAS +
Sbjct 239 CCNWTFLNQVHLISHKTCLKQTGKPCCRPGHMEPLAIPRTASIRQ 283
> CE05506
Length=228
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 0/46 (0%)
Query 57 DRQRATSRAGCSIGCSTGHQYSRSSSCCGWKQHKQSSSAARGTSLL 102
D + T C GC TG++ ++ + CC + H S + G+ L
Sbjct 138 DAKIVTKAQKCDNGCPTGYRCTKKNFCCPYPDHVCSLPVSSGSERL 183
> CE25088
Length=783
Score = 27.3 bits (59), Expect = 7.5, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 0/44 (0%)
Query 41 AAAGVRGVSRSGSRLLDRQRATSRAGCSIGCSTGHQYSRSSSCC 84
AA ++ R + L++ + C S GH+ S++ +CC
Sbjct 2 AAESLKEAKRIKNMLMEEECVLQLGNCKKTASYGHRLSKTEACC 45
Lambda K H
0.314 0.123 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1356426142
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40