bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0075_orf1
Length=106
Score E
Sequences producing significant alignments: (Bits) Value
At4g11610 31.6 0.35
At3g61300 30.0 1.1
YGR097w 29.3 1.9
At1g04150 28.5 3.1
At4g00700 28.1 4.2
CE07247 28.1 4.3
At3g63520 27.7 5.1
> At4g11610
Length=857
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query 18 CP-YKDQYTWKIYPPDPGETKLTAFWLDAGQ----GNRRHPFTDVSKRIRILRRSTTKGT 72
CP Y +QYTW+++ P T LT D GQ GNR + R+ L
Sbjct 497 CPKYNEQYTWEVFDP---ATVLTVGVFDNGQLGEKGNRDVKIGKIRIRLSTL-------- 545
Query 73 QFGRLSRHSEP 83
+ GR+ HS P
Sbjct 546 ETGRIYTHSYP 556
> At3g61300
Length=972
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query 16 TNC---PYKDQYTWKIYPPDPGETKLTAFWLDAGQGNRRHPFTDVSKRIRILRRSTTKGT 72
TNC + +QYTW++Y P T +T D Q N + K +I R +T
Sbjct 605 TNCLNPRFNEQYTWEVYEP---ATVITIGVFDNNQINSGNGNKGDGKIGKIRVRIST--L 659
Query 73 QFGRLSRHS------EPAALGRWVELAGPMSFHISALIPL 106
+ GR+ HS P+ L + EL + F S++ +
Sbjct 660 EAGRIYSHSYPLLVLRPSGLKKMGELHLAIRFSCSSMFQM 699
> YGR097w
Length=1146
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query 25 TWKIYPPDPGETKLTAFWLDAGQGNRRHPFTDVSKRIRILRRSTTKGTQF--GRLSRHS 81
T+KI P+P E +L F F D RI+ + K +F G +SR+S
Sbjct 692 TFKIVSPEPSEEELKHFKRWVQDLKNLTSFNDTKDRIKFIEDRVMKSHRFKAGHMSRNS 750
> At1g04150
Length=1012
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query 18 CP-YKDQYTWKIYPPDPGETKLTAFWLDAGQGNRRHPFTDVS-KRIRILRRSTTKGTQFG 75
CP + +QYTW++Y P T +T D + N + DV ++RI R ST + G
Sbjct 651 CPKWNEQYTWEVYDPC---TVVTVGVFDNARVNENNNSRDVRIGKVRI-RLST---LETG 703
Query 76 RLSRHSEP 83
R+ HS P
Sbjct 704 RVYTHSYP 711
> At4g00700
Length=675
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 18/74 (24%)
Query 17 NCPYKDQYTWKIYPPDPGETKLTAFWLD-----AGQG--NRRHPFTDVSKRIRILRRSTT 69
N Y +QYTW+++ P T LT D AG G R P V R+ L
Sbjct 312 NPKYNEQYTWEVFDP---ATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTL----- 363
Query 70 KGTQFGRLSRHSEP 83
Q GR+ H+ P
Sbjct 364 ---QTGRVYTHAYP 374
> CE07247
Length=413
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query 1 CILGPSSSTKNPPLYTNCPYKDQYTWKIYP 30
CI PSSS +N +N PY D Y K YP
Sbjct 22 CISHPSSSNENVKPISNLPYVD-YIKKKYP 50
> At3g63520
Length=538
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 0/47 (0%)
Query 53 PFTDVSKRIRILRRSTTKGTQFGRLSRHSEPAALGRWVELAGPMSFH 99
P V ++ I TK +FG L R+++ + RW EL FH
Sbjct 290 PKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFH 336
Lambda K H
0.320 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1167556980
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40