bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_0015_orf3 Length=314 Score E Sequences producing significant alignments: (Bits) Value At3g05340 32.0 1.8 SPAC959.03c 32.0 1.9 Hs4506065 31.2 3.2 Hs18549517 31.2 3.2 > At3g05340 Length=770 Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query 90 NETGTVYGVLKGHVEDLTCTIEFLGASGLHENFVEAMLLADTLPFMERLGVRKVVLKSIP 149 NE V+G+ + E TC I+ LG +GL EA D+LP + + +L + Sbjct 482 NEMKEVHGI-EPRTEHYTCIIDMLGRAGL---LKEAKSFIDSLPLKPDCKIWQALLGACS 537 Query 150 ICDAGMVG-LAAELGFVIKASSGDSHLMVRD 179 VG AAE F S +H+++ + Sbjct 538 FHGDTEVGEYAAEQLFQTAPDSSSAHILIAN 568 > SPAC959.03c Length=520 Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query 14 YVMRQKA-GVNDGMREYFSTSEREVFDTVVVKASSALSPQEQMRAARFVREK 64 +V + KA G N +R Y R V D +K +L +++MRA R RE+ Sbjct 449 WVPKAKARGKNSALRRYLRKHARNVVDQRRLKVEKSLEIEKKMRAQRVRREQ 500 > Hs4506065 Length=418 Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Query 118 LHENFVEAMLLADTLPFMERLGVRKVVLKSIPICDAGMV--GLAAELGFVIKASSGDSHL 175 ++E+F+E++ +L F ERL V V+ + ++ G +A+ F+++ SG+ + Sbjct 266 MYESFIESLPFLKSLEFSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVE--SGEVKI 323 Query 176 -MVRDGSLPPPDTDCITLPRSFRAQY 200 M R G + + +PR R QY Sbjct 324 TMKRKGKSEVEENGAVEMPRCSRGQY 349 > Hs18549517 Length=1051 Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%) Query 2 RHRQIETMGEQVYVMRQKAGVNDGMREYFSTSEREVF-----------DTVVVKASSALS 50 + Q+E +G + V++++ D RE E+E+ + ++A S Sbjct 107 KDHQLEALGSRCSVLKEELKQEDAHRELREAQEKELKLCKTQIQDMEKEMKKLRAELRKS 166 Query 51 PQEQMRAARFVREKAKGELYRGAVVDSGY 79 EQ +R +REK+K E +R V+ + Y Sbjct 167 CTEQSVISRTLREKSKLEHFRSQVIKATY 195 Lambda K H 0.321 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 7272855956 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40