bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_0015_orf2
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
CE13720 29.3 2.0
Hs6806882 28.9 2.4
Hs4502117 28.9 2.4
Hs14785908 28.9 2.4
7290075 28.9 2.8
CE26240 28.5 2.9
CE19099 28.5 3.3
CE25459_2 28.5 3.4
> CE13720
Length=537
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query 10 ARCA----INPAPPLAPSLP-----------GMRGGSTAQSFRWRLGEEKCGAIHRHAFT 54
A+CA + PP PS P G+ G T ++ RL K G +H +
Sbjct 5 AKCASLKRASNLPP--PSFPPEETRDGKWKTGLLGVFTIDAYNERLSIMK-GEVHEDVWK 61
Query 55 WYDRQPPTVLHCHTLRSRPQPAH 77
WYD + C + +++ H
Sbjct 62 WYDNKKSMFFECASAKAKLMAGH 84
> Hs6806882
Length=756
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 27 MRGGSTAQSFRWRLGEEKCGAIHRHAF 53
++GG F R+GE G +H HAF
Sbjct 494 LKGGEEGLLFGNRVGERVLGTVHTHAF 520
> Hs4502117
Length=729
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 27 MRGGSTAQSFRWRLGEEKCGAIHRHAF 53
++GG F R+GE G +H HAF
Sbjct 494 LKGGEEGLLFGNRVGERVLGTVHTHAF 520
> Hs14785908
Length=756
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 27 MRGGSTAQSFRWRLGEEKCGAIHRHAF 53
++GG F R+GE G +H HAF
Sbjct 494 LKGGEEGLLFGNRVGERVLGTVHTHAF 520
> 7290075
Length=2221
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query 67 HTLRSRPQPAHPPFRVARRPVDARSARVFFGPL 99
T+++RP+ HPPF V R + A+ RV + PL
Sbjct 1157 QTIQARPK--HPPFNVTVRAMSAQQLRVRWIPL 1187
> CE26240
Length=913
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query 26 GMRGGSTAQSFRWRLGEEKCGAIHRHAFTWYDRQPPTVLHCHTLRSRPQPAH 77
G+ G T ++ RL K G +H + WYD + C + +++ H
Sbjct 414 GLLGVFTIDAYNERLSIMK-GKVHEEVWKWYDNKKSMFFECASAKAKLMAGH 464
> CE19099
Length=915
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 0/40 (0%)
Query 48 IHRHAFTWYDRQPPTVLHCHTLRSRPQPAHPPFRVARRPV 87
+HRH TW D + L +RP P+ P +VA +
Sbjct 708 MHRHPPTWLDENDRELFGTQGLDNRPGPSAQPVQVAVEQI 747
> CE25459_2
Length=888
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query 26 GMRGGSTAQSFRWRLGEEKCGAIHRHAFTWYDRQPPTVLHCHTLRSRPQPAH 77
G+ G T ++ RL K G +H + WYD + C + +++ H
Sbjct 405 GLLGVFTIDAYNERLSIMK-GEVHEDVWKWYDNKKSMFFECASAKAKLMAGH 455
Lambda K H
0.327 0.138 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1195973986
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40