bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_0015_orf1 Length=133 Score E Sequences producing significant alignments: (Bits) Value CE13976 30.0 1.1 At4g11110_1 28.9 2.6 CE27771 28.9 2.6 Hs17437967 28.9 2.9 SPBC8D2.19 28.5 3.6 CE04738 28.1 5.1 Hs4506911 28.1 5.4 7298988 27.3 8.4 > CE13976 Length=482 Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query 10 SRYLPSI-GA----LWRPSKFLRTPYCARNDRGKVMQSVSGGGREPSLTIKCESPELALI 64 S YL SI GA LW ++ P R GK +QS+ E L+ KC+ P + L Sbjct 216 SYYLHSIVGAILFVLWY-FVYIDHPQDTRRVSGKELQSIQKNKSEAHLSKKCDVPYIKLA 274 Query 65 TKP 67 T P Sbjct 275 TSP 277 > At4g11110_1 Length=492 Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%) Query 34 NDRGKVMQSVSGGGREPSLTIK-CESPELALITKPNSAARPTMPASQIGMLF 84 ND G V++ LT+K CE +A++ +P+S AR M SQ F Sbjct 72 NDEGDVVEE---------LTVKTCEGSSMAIVGRPSSRARLEMNRSQFLHRF 114 > CE27771 Length=391 Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 0/31 (0%) Query 98 SVSASSIASTKFSCKPLAPRNSIVQVRSSTC 128 VS ++ ST C+ + NSI++V+S+TC Sbjct 349 EVSKGNLISTPLGCEDIFGANSILEVKSNTC 379 > Hs17437967 Length=317 Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query 57 ESPELALITKPNSAARPTMPASQI------GMLFSTTFLTPRRSMNGSVSASSIASTKFS 110 E PEL L+T A P + Q+ G +L P R + GS+SAS F+ Sbjct 81 EPPELTLLTGTCDLAPPGVGKGQVLQGRKHGHCREGHYLLPERPLRGSISASVEGPKSFA 140 > SPBC8D2.19 Length=559 Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust. Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query 84 FSTTFLTPRRSMNGSVSASSIASTKFSCKPLAPRNSIVQVRSS 126 F T +L R+ NG ++ K S KP P++ ++++R S Sbjct 32 FGTVYLAQRKEKNGLYETVAVKKLKNSSKP-KPKHELLKLRES 73 > CE04738 Length=1035 Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query 38 KVMQSVSGGGREPSLTIKCESPELALI-TKPNSAARPTMPASQIGMLFSTTFLTPRRSMN 96 K+ Q++S G T++ L+ T P +PT+ ++I FS T P +S N Sbjct 421 KIEQNISNGSSRIDDTVEATDNVPTLVNTTPTEQTKPTLSYAKIVEKFSKTDQQPAKSDN 480 Query 97 GSVS 100 S S Sbjct 481 SSPS 484 > Hs4506911 Length=387 Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query 10 SRYLPSIGALWRPSKFLRTPYCARNDRGKVMQSVSGGGREPSLTIKCESPE-----LALI 64 SR+L ++G LW P + + DRG + + GR+ + IK S L ++ Sbjct 155 SRFLSALGGLWEPGELQLLNVTSALDRGGRV-PLPIEGRKEGVYIKVGSASPFSTCLKMV 213 Query 65 TKPNSAAR 72 P+S AR Sbjct 214 ASPDSHAR 221 > 7298988 Length=476 Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Query 42 SVSGGGREPSLTIKCESPELALI-TKPNSAARPTMPASQIG 81 +++GGGR P+LT C SP + I T P A P P +G Sbjct 107 AMNGGGRTPALTRSCSSPAVYDIETHP---ASPVFPHLLLG 144 Lambda K H 0.317 0.128 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1356426142 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40