bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_8591_orf1 Length=132 Score E Sequences producing significant alignments: (Bits) Value 339860.Msp_0440 32.7 3.5 290338.CKO_03131 32.0 4.8 31033.SINFRUP00000160407 31.2 8.8 > 339860.Msp_0440 Length=1552 Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query 24 ICTLSSSWILNRAELNSDSVWVVGCGPLKIVGSLQNSITVGSARSEESSCTAASKSNKNL 83 + +S+S + N E+ +DS V +K + + N+I +++E S K+N+N Sbjct 23 LSAVSASDVSNTHEVQADSSHVDIPTTVKSIETSDNNI-----KAQEPSTNVKQKTNENS 77 Query 84 RS-PYQKIRKNLNTPICSCVPHATAGLHREQREEGSSKLRRRIQYVVS 130 +S QK KN+ T V T + + ++ S K + YVV+ Sbjct 78 KSLNVQKTNKNIQTATKDIVSENTKSIEKTSIKQKSQKTADKSTYVVT 125 > 290338.CKO_03131 Length=307 Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 11/97 (11%) Query 2 SNCPPALGYFTLSWNNQVLKNEICTLSSSWILNRAELNSDSVWVVGCGPLKIVGSLQNSI 61 S P G+FT SW N+VLK + LS S++++ A + +G L + L + Sbjct 216 SGTPAGKGHFTTSWPNKVLKGD---LSPSFMIDLAHKD------LGIA-LDVANQLHVPM 265 Query 62 TVGSA-RSEESSCTAASKSNKNLRSPYQKIRKNLNTP 97 +G+A R + AA + ++ + +++R + P Sbjct 266 PLGAASREVYNQARAAGRGREDWTAILEQVRNSAGLP 302 > 31033.SINFRUP00000160407 Length=1260 Score = 31.2 bits (69), Expect = 8.8, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 12/63 (19%) Query 69 EESSCTAASKSNKNLRSPYQKIRKNLNTPICSCVPHATAGLHREQREEGSSKLRRRIQYV 128 EE+SC+++ SP+ +NL TP+ PH A R+ S K+R Y+ Sbjct 1074 EENSCSSSD-------SPWLNRDQNLQTPVMMQSPHPNANAVRD-----SKKMRPEDGYM 1121 Query 129 VSY 131 ++Y Sbjct 1122 MAY 1124 Lambda K H 0.314 0.127 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22851147482 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40