bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_8567_orf1 Length=186 Score E Sequences producing significant alignments: (Bits) Value 7719.ENSCINP00000008353 32.0 8.6 > 7719.ENSCINP00000008353 Length=531 Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 23/135 (17%) Query 3 IFLHLIFVWRKISKRRRKRL----ESRKQEQQRQQQQQQQQQSEREQQRGRCGGRLSWKL 58 I H + ++ RR++ L E+RK+E R+Q+ + +++ R+++ RL Sbjct 352 IHDHQTMLMKQDLLRRQEELQRLEEARKRELDRRQELEVARENARKKEMEGQSQRLDMLR 411 Query 59 AR--GQAPAHRPPHPPLGHPQKSVEISFALFGFPRPQTPRLLPQWHSSFG----AGQPG- 111 A+ G PPHP +G + GF RP +P + PQ H GQ G Sbjct 412 AQIEGTYKQDMPPHPSMGFNHQP--------GFGRPGSPLMPPQLHDQLAKELMGGQGGL 463 Query 112 ----SAFAANRSLGF 122 S F NR L Sbjct 464 APAPSRFDQNRELAM 478 Lambda K H 0.323 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 40752393066 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40