bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_8007_orf2 Length=182 Score E Sequences producing significant alignments: (Bits) Value 391774.Dvul_1798 33.9 2.2 > 391774.Dvul_1798 Length=1145 Score = 33.9 bits (76), Expect = 2.2, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query 33 SRDDP--ASHARRGARPQGEVLVSAIAAAAAAAAAAAAPLP 71 +R DP A H R G R +G VL+S I A + AA +P Sbjct 336 ARHDPTAADHGRNGGRTRGAVLISVIVTIVAFSVIGAAMVP 376 Lambda K H 0.321 0.131 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 38282551062 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40