bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_8007_orf1 Length=189 Score E Sequences producing significant alignments: (Bits) Value 5207.CNE01920 42.0 0.010 9544.ENSMMUP00000004416 32.7 5.4 > 5207.CNE01920 Length=313 Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query 94 AVSRRRQPLRQQQQRPPRQQLVKGAGKGAAAAAAAAAAAAMALTKTSPWGRAPRLAWLAG 153 + RR P ++ + R +Q +V +GKG + AA A++L TSP RAP++ Sbjct 26 TIPRRGAPPQKSKIRGVKQVVVVASGKGGVGKSTVAANLALSLLNTSPSDRAPKVG---- 81 Query 154 SSLLLLLLWGPSAAAAEG 171 LL L ++GPS G Sbjct 82 --LLDLDIFGPSVPKLMG 97 > 9544.ENSMMUP00000004416 Length=883 Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query 70 LSLRSARLSSCCSCCGSSSALHCGAVSRRRQPLRQQQQRPPRQQLVKGAGKGAAAAAAAA 129 LS R R SS CS G S+A G + +QPL Q Q RP ++Q A + Sbjct 34 LSERKRRGSSLCSYYGRSAA---GPGAGAQQPLLQLQSRPRQEQSPPPARQELQGPPLPE 90 Query 130 AAAAMALTKTSPWGRAPRL 148 AA + ++SPW + P L Sbjct 91 AAPGITSFRSSPWQQPPLL 109 Lambda K H 0.317 0.126 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 41818451300 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40