bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_7907_orf1 Length=71 Score E Sequences producing significant alignments: (Bits) Value 7227.CG18402-PA 32.3 4.2 > 7227.CG18402-PA Length=2144 Score = 32.3 bits (72), Expect = 4.2, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Query 15 KKTRNGRNEGSGGGGGAGSCVAVDSRSCCTPGGLSPTRGRRSCGLSP 61 +K++NG ++ S G GA A+DS + G +P+R RR L P Sbjct 1049 RKSKNGSSDKSDGAEGA----ALDSNAIPNGGATNPSRRRRDVALEP 1091 Lambda K H 0.319 0.138 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22642837084 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40