bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5237_orf1 Length=100 Score E Sequences producing significant alignments: (Bits) Value 32051.SynWH7803_0762 33.1 2.6 386415.NT01CX_1458 32.0 5.5 3702.AT2G02570.2 32.0 5.6 > 32051.SynWH7803_0762 Length=1476 Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 0/26 (0%) Query 61 AVALVGEGIIYLRRDRLVARLFEIFR 86 AVAL+G G++++ DR+VA +FE R Sbjct 19 AVALIGGGVVWIAADRVVASVFERLR 44 > 386415.NT01CX_1458 Length=906 Score = 32.0 bits (71), Expect = 5.5, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query 9 EPNQYQKKQQQNWQQNWQQKQQQDSSKNSSKIGSKIGRKRRSKMRIPYGSFAAV--ALVG 66 +PN+ +K+Q + QQN + S+K ++ I K + ++ M + G A + A+ G Sbjct 836 QPNEKKKEQDKREQQNKVTNAESKSNKKATSIKEK--KLPQTGMPVGSGLLATLGSAISG 893 Query 67 EGIIYLRRDR 76 G++ +R++R Sbjct 894 MGVVLMRKNR 903 > 3702.AT2G02570.2 Length=300 Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Query 14 QKKQQQNWQQNWQQKQQQDSSKNSSKIGSKIGRKRRSKMRIPYGSFAAVALVGEG 68 Q K+Q +WQQ Q + + K+G GRK+ S + P F V + G G Sbjct 227 QNKKQNDWQQF------QTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSG 275 Lambda K H 0.322 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23067334887 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40