bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4287_orf1 Length=50 Score E Sequences producing significant alignments: (Bits) Value 33169.AGOS_AGL256W 32.3 4.5 > 33169.AGOS_AGL256W Length=507 Score = 32.3 bits (72), Expect = 4.5, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 0/31 (0%) Query 20 SIRHVFGYSFLTASWKSQNVSWCFLDVHVRT 50 S RH+ GYS T W ++ W ++ VH++T Sbjct 202 SYRHMNGYSGHTYKWSNKQGDWRYVQVHIKT 232 Lambda K H 0.328 0.134 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23175133371 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40