bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4198_orf1 Length=122 Score E Sequences producing significant alignments: (Bits) Value 393305.YE1050 32.7 3.7 326423.RBAM_006490 31.6 6.6 > 393305.YE1050 Length=403 Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%) Query 34 RRLLLLLLLQLQQQQFHTATAAT---LGCPTPSAVLRFQTLRGLTLG----FLSPAVQWG 86 R +L+L+L ++ ++H+ +A L T V+RFQ L G+TLG +S Sbjct 185 RDVLILMLTMIKAHRYHSTQSAEDSRLITATNQLVMRFQQLSGMTLGSNELLMSQLFAHL 244 Query 87 VPACRISRCC----IINEAFESCSR 107 PA I RC I N + E +R Sbjct 245 APA--IERCYFNIGIDNSSLEEVNR 267 > 326423.RBAM_006490 Length=761 Score = 31.6 bits (70), Expect = 6.6, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query 3 STSGVFAVALACESPGYWIMDTKSCSVGLATRRLLLLLLLQLQQQQFH-TATAATLGCPT 61 ST+G F A + P + TKS S TR +++L L + ++ T T G T Sbjct 51 STTGTFGPATMAKCP---TLSTKSNSSNEKTRNQIMILQGALYCKGYNPTGFTGTYGDGT 107 Query 62 PSAVLRFQTLRGLT 75 +A+ +FQT GL+ Sbjct 108 KAAIKKFQTDAGLS 121 Lambda K H 0.325 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22916587881 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40