bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3837_orf2 Length=120 Score E Sequences producing significant alignments: (Bits) Value 5833.MAL8P1.124 36.6 0.24 > 5833.MAL8P1.124 Length=1346 Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 0/31 (0%) Query 90 CSSSYSSNSCSSNSCSSNSCSSNSCSSNSCS 120 C Y +N CS+N CS+N CS+N CS+N CS Sbjct 497 CLEKYDNNICSNNICSNNICSNNICSNNICS 527 Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 0/26 (0%) Query 95 SSNSCSSNSCSSNSCSSNSCSSNSCS 120 S+N CS+N CS+N CS+N CS+N CS Sbjct 507 SNNICSNNICSNNICSNNICSNNICS 532 Lambda K H 0.306 0.111 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23080484097 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40