bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3417_orf2 Length=96 Score E Sequences producing significant alignments: (Bits) Value 323097.Nham_3863 32.3 4.7 342109.XOO_3087 31.6 6.4 291331.XOO3259 31.6 6.4 > 323097.Nham_3863 Length=393 Score = 32.3 bits (72), Expect = 4.7, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Query 5 EKSGKSSEETTMPQRKFLLEILKGIRFMEQRWPGGYLGRSTPEVLPTGNTHLLWNPDAV- 63 +K+G+S T P R F + I + ++F ++W G + ++L G+ LWN + V Sbjct 192 KKAGRSPATPTAPPRMFDISISEVVKFKRRKWGGAI----SEDIL--GSLDRLWNAEVVV 245 Query 64 --FKGRGCRCGEL 74 KG R G+ Sbjct 246 DPMKGTKYRGGKF 258 > 342109.XOO_3087 Length=341 Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%) Query 9 KSSEETTMPQRKFLLEILKGIRFMEQRWPGGYLGRSTPEVLPTGNTHLLWNPDAVFKGR 67 ++ ++ T+ + LLE G+ +++R PGGY PT TH DAVF GR Sbjct 254 ETRDKITVEAARALLEASPGVEVVDERTPGGY---------PTPVTHAS-GKDAVFVGR 302 > 291331.XOO3259 Length=341 Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%) Query 9 KSSEETTMPQRKFLLEILKGIRFMEQRWPGGYLGRSTPEVLPTGNTHLLWNPDAVFKGR 67 ++ ++ T+ + LLE G+ +++R PGGY PT TH DAVF GR Sbjct 254 ETRDKITVEAARALLEASPGVEVVDERTPGGY---------PTPVTHAS-GKDAVFVGR 302 Lambda K H 0.321 0.139 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22546722150 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40