bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2232_orf4 Length=170 Score E Sequences producing significant alignments: (Bits) Value 190650.CC_2664 33.1 3.1 8090.ENSORLP00000001602 32.0 7.6 10116.ENSRNOP00000041126 31.6 9.2 69293.ENSGACP00000020622 31.6 9.6 > 190650.CC_2664 Length=268 Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query 30 PYFQVPSRENGSHLVPLLGVPMESCRPYSAT------VPLSSEVTC-TGCSTKGLCVFAL 82 PY + +R+ G++L+PL GV +E YSA VP + + ST+G + L Sbjct 89 PYLESFNRDKGANLIPLQGVHVEPIGTYSAKWKSIAEVPNGATIAIPNDASTEGRALILL 148 Query 83 CLHAVVPL 90 + V+ + Sbjct 149 AKNGVIAI 156 > 8090.ENSORLP00000001602 Length=2098 Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query 34 VPSRENGSHLVPLLGVPMESCRPYSATVPLSSEVTCT-----GCSTKGL----CVFALCL 84 PS E GSHL P P++S P + VP+S+E + G TKG+ CV + Sbjct 826 TPSPETGSHLDPGPAAPVQSDSPSALFVPVSAEELHSVGLMKGFRTKGVDECPCVEKVQD 885 Query 85 HAVVPLNQKR 94 +++P+N +R Sbjct 886 SSLLPVNVER 895 > 10116.ENSRNOP00000041126 Length=402 Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query 40 GSHLVPLLGVPMESCRPYSATVPLSSEVTCTGC---STKGLCVFALCLHAVVPLNQKRAH 96 G+H+ L V +E+ V L +EV C+ C ST+ V A+ A VP+ +RA Sbjct 47 GAHIASCLHVTVETAVLIETLVALGAEVRCSSCNIFSTQDHAVAAIA-KAGVPVFAERAR 105 Query 97 ALDAPW 102 + + W Sbjct 106 QISSTW 111 > 69293.ENSGACP00000020622 Length=801 Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 9/126 (7%) Query 7 PLLADLLQQVPLLLRPAPLQREKPYFQVPSRENGSHLVPLLGVPMESCRPYSATVPLSSE 66 PL+ LL LL PA + VP R++ S PL S S + Sbjct 451 PLVCSLLHHPDLLRSPA---KSTAQTDVPRRKSPSDKSPLPQTTSSSVHRKSQYLSNDQR 507 Query 67 VTCTGCST------KGLCVFALCLHAVVPLNQKRAHALDAPWICQEIQDGRSRQKWTVKG 120 + S+ +G C + A++ L + RA APW+ + R K + Sbjct 508 ASSVDSSSAGGSWREGSCSLTPMMRALIQLEETRATESRAPWVGSQRSSAERRHKEAFQE 567 Query 121 RMTLEG 126 R L+ Sbjct 568 RGGLQA 573 Lambda K H 0.321 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 31617132627 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40