bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2038_orf2 Length=81 Score E Sequences producing significant alignments: (Bits) Value 7227.CG2944-PD 35.0 0.66 > 7227.CG2944-PD Length=363 Score = 35.0 bits (79), Expect = 0.66, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 0/20 (0%) Query 29 CTYSSEYICICVWACHYVYK 48 C Y S Y+CIC++ C Y+YK Sbjct 4 CIYMSMYVCICIFICFYMYK 23 Lambda K H 0.331 0.138 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22803374801 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40