bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1800_orf2 Length=78 Score E Sequences producing significant alignments: (Bits) Value 9615.ENSCAFP00000034859 32.7 3.5 > 9615.ENSCAFP00000034859 Length=427 Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 0/54 (0%) Query 24 GNRGGEPKIELKETAESGKKASRQADRIKRLKSAKRGLLPAPEKTLRIVLLHSK 77 G +P + L E+ E G++ SRQ + + + + P PE ++L HSK Sbjct 341 GESTSDPTVNLAESEEHGEETSRQQTTLDQGRCLQERNRPKPELHNAVILQHSK 394 Lambda K H 0.311 0.129 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23019419813 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40