bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0934_orf1 Length=171 Score E Sequences producing significant alignments: (Bits) Value 220664.PFL_3004 34.3 1.8 227882.SAV2142 33.9 2.1 220668.lp_3059 33.5 2.9 322098.AYWB_064 32.0 6.9 > 220664.PFL_3004 Length=749 Score = 34.3 bits (77), Expect = 1.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query 82 QQQDSTSLSAAAAASGVGAAGKGDGPPAVFSST---GRNGTRDLFLQADSLKNQEVDISR 138 +Q +L A A SGV + DG PA F+ + G LF+ A+ KNQ++++ Sbjct 456 EQTVPYTLPANATQSGVKSRSSKDGSPANFNEIRMEDKKGAEQLFIHAE--KNQDIEVEN 513 Query 139 D 139 D Sbjct 514 D 514 > 227882.SAV2142 Length=323 Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query 5 CCCCACM-----RDLEATAASLGAARH-FSTPRLSTCLRMLKMKLFQSMRRRISSRDSFS 58 C A M R + T L AA T R L + K++ SMR++I SR + Sbjct 121 VCAVALMAGQYERSGDTTYIWLAAAVIGLDTLRYINSLEIFKIR--HSMRKQIKSRLREA 178 Query 59 RSGSQQSEKHQPQQQQQQNPETTQQQDSTSLSAAAAASGVGAAGK 103 R Q+E + + NPE +QD S +A A G A + Sbjct 179 RRSENQAELAFMEDLLRNNPEADIEQDQRSAAAGQEAPEGGTAAR 223 > 220668.lp_3059 Length=1356 Score = 33.5 bits (75), Expect = 2.9, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query 65 SEKHQPQQQQQQNPETTQQQDSTSLSAAAAASGVGAAGKGDGPPAVFSSTGRNGTRDLFL 124 SE Q QQ + Q DST+ SA A+ + AA D PA +STG + D+ Sbjct 106 SEAQQRSTQQDKTAVDQQASDSTAASAGASTNQASAATSSDQAPAA-NSTGTHHAIDMAS 164 Query 125 QADSL 129 A +L Sbjct 165 SASAL 169 > 322098.AYWB_064 Length=356 Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Query 43 LFQSMRRRISSRDSFSRSGSQQSEKHQPQQQQQQNPETTQQQDS----TSLSAAAAASGV 98 L+Q+M+ + +D+ S Q+ EK Q +Q Q NP T +D+ + +GV Sbjct 97 LYQNMKDMKNIKDTLESSQEQEQEKKQAKQNQGPNP--TNPKDTFTSQNNFPQMYLFTGV 154 Query 99 GAAGKGDGPPAVFSSTGRNGTRDLFLQADSLK 130 GK + + + G + L + AD+ + Sbjct 155 NGVGKTTTIGKMAEALKQEGKKVLLIAADTFR 186 Lambda K H 0.316 0.127 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 32237076404 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40