bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0507_orf1 Length=100 Score E Sequences producing significant alignments: (Bits) Value 10116.ENSRNOP00000021717 35.0 0.68 10090.ENSMUSP00000025430 33.5 1.7 8090.ENSORLP00000011793 31.2 8.7 > 10116.ENSRNOP00000021717 Length=1461 Score = 35.0 bits (79), Expect = 0.68, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Query 4 VAKRGRVYIHQESGRSHKT------KEDRKALCMRMQHSRCIYTAESCGARVCAVQTPAA 57 V+KRG +YI ++ GR +T +E + A+ +H R + + A + Q+P A Sbjct 706 VSKRGTIYIGKKRGRKPRTELPPPSEEPKTAI----KHPRPVSSQPDVPAVPSSFQSPVA 761 Query 58 CSPRPVHLL 66 SP VH L Sbjct 762 SSPAAVHPL 770 > 10090.ENSMUSP00000025430 Length=1535 Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Query 4 VAKRGRVYIHQESGRSHKT------KEDRKALCMRMQHSRCIYTAESCGARVCAVQTPAA 57 V+KRG +YI ++ GR +T +E + A+ +H R + + A + Q+P A Sbjct 659 VSKRGTIYIGKKRGRKPRTELPPPSEEPKTAI----KHPRPVSSQPDVPAVPSSFQSPVA 714 Query 58 CSPRPVHLL 66 SP +H L Sbjct 715 SSPAAMHPL 723 > 8090.ENSORLP00000011793 Length=975 Score = 31.2 bits (69), Expect = 8.7, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query 42 AESCGARVCAVQ---TPAACSPRPVHLLLPTTSLKAQKCFKNIYFV 84 +S G RVCA+ T +AC P P + T S + ++C N Y V Sbjct 539 GQSSGCRVCALSAQSTSSACVPCPPGHYIDTDSNQCKECPSNTYLV 584 Lambda K H 0.332 0.137 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23067334887 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40