bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0075_orf1 Length=106 Score E Sequences producing significant alignments: (Bits) Value 227882.SAV5844 32.3 4.3 169963.lmo2388 32.0 5.0 3702.AT4G11610.1 31.6 6.4 > 227882.SAV5844 Length=416 Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 15/80 (18%) Query 42 WLDAGQGNRRHPFTD----VSKRIRILRRSTTKGTQFGR----------LSRHSEPA-AL 86 +L G+G RHP+ D V+ + +LR S T Q GR S+ + A AL Sbjct 161 YLGLGEGPGRHPYMDTRSSVTASVDMLRASRTAARQLGRPLTGDVYATGFSQGGQVAMAL 220 Query 87 GRWVELAGPMSFHISALIPL 106 GR + +F + AL P+ Sbjct 221 GRALRQGADHTFRLKALAPI 240 > 169963.lmo2388 Length=272 Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 0/45 (0%) Query 5 PSSSTKNPPLYTNCPYKDQYTWKIYPPDPGETKLTAFWLDAGQGN 49 P + ++P +YT P+ D +++ D E ++ W D G GN Sbjct 205 PFFTQEDPRMYTENPHHDTLLFQLASEDFDENRMAIMWGDCGVGN 249 > 3702.AT4G11610.1 Length=1011 Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 16/71 (22%) Query 18 CP-YKDQYTWKIYPPDPGETKLTAFWLDAGQ----GNRRHPFTDVSKRIRILRRSTTKGT 72 CP Y +QYTW+++ P T LT D GQ GNR + R+ L Sbjct 651 CPKYNEQYTWEVFDP---ATVLTVGVFDNGQLGEKGNRDVKIGKIRIRLSTL-------- 699 Query 73 QFGRLSRHSEP 83 + GR+ HS P Sbjct 700 ETGRIYTHSYP 710 Lambda K H 0.320 0.137 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22605445551 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40