bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
           164,496 sequences; 82,071,388 total letters



Query=  Eten_7920_orf2
Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ath:AT2G42120  POLD2; POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT...  74.3    1e-13
  dre:796456  pold2, MGC55633, MGC77043, si:dz150f13.3, zgc:55633...  34.3    0.089
  pfa:PFC0340w  DNA polymerase epsilon subunit B, putative; K0232...  33.5    0.19


> ath:AT2G42120  POLD2; POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT); 
DNA binding / DNA-directed DNA polymerase; K02328 DNA polymerase 
delta subunit 2
Length=441

 Score = 74.3 bits (181),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 37/47 (78%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query  11  ERVQCAYASL-DEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVP  56
           ER Q  Y SL DE FEI KE Y+GQQYSQIYFARLHLMRTLLYSL P
Sbjct  10  ERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAP  56


> dre:796456  pold2, MGC55633, MGC77043, si:dz150f13.3, zgc:55633, 
zgc:77043; polymerase (DNA directed), delta 2, regulatory 
subunit (EC:2.7.7.7); K02328 DNA polymerase delta subunit 
2
Length=467

 Score = 34.3 bits (77),  Expect = 0.089, Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  11  ERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVPH  57
           ER + AY+   E F IG+ ++  +QY+ IY  RL  MR +L     H
Sbjct  24  ERAEPAYSGCSERFRIGERSF-SRQYAHIYATRLMQMRQILTERATH  69


> pfa:PFC0340w  DNA polymerase epsilon subunit B, putative; K02328 
DNA polymerase delta subunit 2
Length=498

 Score = 33.5 bits (75),  Expect = 0.19, Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query  1   NEGSVPAMGMERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLL  51
           NEG      +++    Y +L E F I    Y  QQ+S IY  R+ +M+TLL
Sbjct  23  NEGEHQNKKIKKKHFEYVNLSERFIITCPTYT-QQFSHIYSLRIKIMKTLL  72



Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 2082685716


  Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
    Posted date:  Sep 17, 2011  2:57 PM
  Number of letters in database: 82,071,388
  Number of sequences in database:  164,496



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40