bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_7388_orf1
Length=81
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 105 4e-23
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 90.9 9e-19
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 88.2 6e-18
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 83.6 1e-16
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 81.6 6e-16
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 79.3 3e-15
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 78.2 6e-15
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 77.4 1e-14
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 77.4 1e-14
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 75.9 3e-14
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 74.3 9e-14
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 74.3 9e-14
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 72.4 3e-13
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 70.1 1e-12
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 69.7 2e-12
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 69.3 2e-12
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 69.3 3e-12
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 68.9 3e-12
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 68.9 4e-12
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 68.9 4e-12
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 68.6 4e-12
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 68.6 4e-12
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 67.4 9e-12
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 67.4 1e-11
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 67.0 1e-11
dre:100334143 polymerase (RNA) III (DNA directed) polypeptide ... 66.2 3e-11
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 65.9 3e-11
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 65.1 5e-11
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 65.1 5e-11
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 63.9 1e-10
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 63.2 2e-10
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 61.2 7e-10
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 60.5 1e-09
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 59.3 3e-09
ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-d... 50.4 1e-06
eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta pr... 49.7 2e-06
tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2... 41.2 9e-04
tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein... 40.0 0.002
bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA pol... 39.7 0.002
bbo:BBOV_II005240 18.m06433; SNAP protein 28.1 6.6
cel:T08G11.1 hypothetical protein 28.1 7.4
dre:555319 ccdc39; coiled-coil domain containing 39-like 28.1 7.9
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 105 bits (262), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 0/66 (0%)
Query 16 QDVYRCGIGAAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAA 75
+D G+ EL+++LRV+YHK CM PGEAVG VAAQS+GEPATQMTLNTFHLAGHGAA
Sbjct 1907 RDARTTGLEKEELEKILRVIYHKCCMPPGEAVGCVAAQSIGEPATQMTLNTFHLAGHGAA 1966
Query 76 NVTMGI 81
NVTMGI
Sbjct 1967 NVTMGI 1972
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 90.9 bits (224), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/54 (74%), Positives = 49/54 (90%), Gaps = 0/54 (0%)
Query 28 LQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+++LLR+ Y K+ + PGEAVG +AAQS+GEPATQMTLNTFHLAGHGAANVT+GI
Sbjct 1562 MEKLLRLKYMKTQISPGEAVGCLAAQSIGEPATQMTLNTFHLAGHGAANVTLGI 1615
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 88.2 bits (217), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 50/60 (83%), Gaps = 0/60 (0%)
Query 22 GIGAAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
G+ + + L+++ Y +S + PGEAVG++A+QSVGEP+TQMTLNTFH AGHGAANVT+GI
Sbjct 1160 GVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGI 1219
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 83.6 bits (205), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/57 (64%), Positives = 44/57 (77%), Gaps = 0/57 (0%)
Query 25 AAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
++E + Y K +PGEAVG +A QS+GEPATQMTLNTFHLAGHGAANVT+GI
Sbjct 1376 SSETDSNFKAYYEKCKCEPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGAANVTLGI 1432
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 81.6 bits (200), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y +S +PGEAVG +A QS+GEPATQMTLNTFHLAGHGA NVT+GI
Sbjct 1389 YKRSQCEPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGATNVTLGI 1434
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 79.3 bits (194), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/55 (67%), Positives = 44/55 (80%), Gaps = 0/55 (0%)
Query 27 ELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
EL +L++ + S QPGE VGV+AAQSVGEP+TQMTLNTFHLAG G NVT+GI
Sbjct 1138 ELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1192
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 78.2 bits (191), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 0/74 (0%)
Query 8 QQQQQQQQQDVYRCGIGAAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTF 67
Q+ Q ++ + + L+ LL++ + +S +PGEAVG++AAQS+GEP+TQMTLNTF
Sbjct 1172 QEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTF 1231
Query 68 HLAGHGAANVTMGI 81
H AG G NVT+GI
Sbjct 1232 HFAGRGEMNVTLGI 1245
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 77.4 bits (189), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 45/57 (78%), Gaps = 0/57 (0%)
Query 25 AAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
A L+ LL++ + ++ PGEAVG+VAAQS+GEP+TQMTLNTFH AG G NVT+GI
Sbjct 1182 ADRLRNLLQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1238
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 77.4 bits (189), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 0/74 (0%)
Query 8 QQQQQQQQQDVYRCGIGAAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTF 67
Q+ Q ++ + + L+ LL++ + +S PGEAVG++AAQS+GEP+TQMTLNTF
Sbjct 1179 QEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTF 1238
Query 68 HLAGHGAANVTMGI 81
H AG G NVT+GI
Sbjct 1239 HFAGRGEMNVTLGI 1252
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 75.9 bits (185), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 42/54 (77%), Gaps = 0/54 (0%)
Query 28 LQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
L Q + +++KS PGE VG +AAQS+GEPATQMTLNTFH AG G+ NVT+G+
Sbjct 1383 LLQEIEKIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGV 1436
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 74.3 bits (181), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query 3 QWYSKQQQQQQQQQDVYRCGIGAAELQQLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQM 62
Q+ +QQ+ D+ + L+ LL + + ++ PG+AVG++AAQS+GEP+TQM
Sbjct 1174 QYGCAWEQQRNSSHDM--SSLTFDSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQM 1231
Query 63 TLNTFHLAGHGAANVTMGI 81
TLNTFH AG G NVT+GI
Sbjct 1232 TLNTFHFAGRGEMNVTLGI 1250
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 74.3 bits (181), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query 23 IGAAELQQLLRVV---YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTM 79
IG LQ LL V +H++ GE VG +AAQS+GEPATQMTLNTFH AG G+ NVT+
Sbjct 1067 IGPKALQWLLGEVERHFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTL 1126
Query 80 GI 81
G+
Sbjct 1127 GV 1128
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 40/50 (80%), Gaps = 0/50 (0%)
Query 32 LRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
++ +++KS PGE VG +AAQS+GEPATQMTLNTFH AG + NVT+G+
Sbjct 1067 VKRIFYKSICHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGL 1116
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 70.1 bits (170), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query 31 LLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
LL+ Y+ S PGE++G++ AQS GEPATQMTLNTFHLA G NVTMGI
Sbjct 2046 LLKSKYYNSLCNPGESIGILVAQSFGEPATQMTLNTFHLA--GTENVTMGI 2094
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 69.7 bits (169), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+++S GE VG +AAQS+GEPATQMTLNTFH AG G+ NVT+G+
Sbjct 1108 FYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGV 1153
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 69.3 bits (168), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y K+ +PGEAVG +AAQS+GEP TQMTL TFH AG + NVT+G+
Sbjct 1453 YMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1498
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 69.3 bits (168), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Query 31 LLRVVYHK---SCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
L R +Y K S PGE VG++AAQS+GEP+TQMTLNTFH AG G NVT+GI
Sbjct 1216 LKRTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1269
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 68.9 bits (167), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+ ++ QPGE VG +AAQS+GEPATQMTLNTFH AG A NVT+G+
Sbjct 1066 FQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGV 1111
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+ +S + PGE +G VAAQS+GEPATQMTLNTFH AG A NVT+G+
Sbjct 1074 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1119
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+ K+ PGE VG +AAQS+GEPATQMTLNTFH AG + NVT+G+
Sbjct 1068 FFKAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGL 1113
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 68.6 bits (166), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y KS +PGEA+G + +QS+GEPATQMTL TFH AG + NVT+G+
Sbjct 1271 YQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVTLGV 1316
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 68.6 bits (166), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+++S PGE VG +AAQS+GEPATQMTLNTFH AG A NVT+G+
Sbjct 1073 FNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGV 1118
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 67.4 bits (163), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
++++ PGE VG +AAQS+GEPATQMTLNTFH AG A NVT+G+
Sbjct 1076 FNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGV 1121
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
++++ PGE VG +AAQS+GEPATQMTLNTFH AG A NVT+G+
Sbjct 1076 FNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGV 1121
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Query 30 QLLRVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Q LR V H PGE VGV+AAQS+GEPATQMTLNTFH AG + VT G+
Sbjct 1052 QFLRSVVH-----PGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGV 1098
> dre:100334143 polymerase (RNA) III (DNA directed) polypeptide
A, 155kDa-like; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=673
Score = 66.2 bits (160), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query 1 TRQWYSKQQQQQQQQQDVYRCG-IGAAELQQLL---RVVYHKSCMQPGEAVGVVAAQSVG 56
TR Y + + +Y+ I +L++ L R Y ++ M+PG AVG + AQS+G
Sbjct 370 TRDKYGINDNGTTEPKVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIG 429
Query 57 EPATQMTLNTFHLAGHGAANVTMGI 81
EP TQMTL TFH AG + N+T+G+
Sbjct 430 EPGTQMTLKTFHFAGVASMNITLGV 454
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 65.9 bits (159), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y K+ ++PG A+G + AQS+GEP TQMTL TFH AG + NVT+G+
Sbjct 1078 YRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1123
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 65.1 bits (157), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 0/49 (0%)
Query 33 RVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
R Y ++ M+PG AVG + AQS+GEP TQMTL TFH AG + N+T+G+
Sbjct 1019 RDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 65.1 bits (157), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 0/49 (0%)
Query 33 RVVYHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
R Y ++ M+PG AVG + AQS+GEP TQMTL TFH AG + N+T+G+
Sbjct 1019 RDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1067
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y K PG+AVG ++AQS+GEP TQMTL TFH AG + NVT+G+
Sbjct 1783 YFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1828
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y ++ PGEA+G + AQS+GEP TQMTL TFH AG + NVT+G+
Sbjct 1190 YQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1235
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query 27 ELQQLLRVVYHK---SCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
+L + + Y+K + +PG AVG +AA S+GEP+TQMTL TFH AG + N+T G+
Sbjct 1023 QLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 1080
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 0/46 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAANVTMGI 81
Y K+ + GEAVG + AQS+GEP TQMTL TFH AG + NVT+G+
Sbjct 1371 YVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1416
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query 16 QDVYRC-GIGAAELQQLLRVV---YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAG 71
Q +Y+ G+ +L+ +++ Y + ++ G A+G + AQS+GEP TQMTL TFH AG
Sbjct 989 QVLYKASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAG 1048
Query 72 HGAANVTMGI 81
+ N+T G+
Sbjct 1049 VASMNITQGV 1058
> ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-directed
RNA polymerase subunit beta' [EC:2.7.7.6]
Length=1376
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 0/35 (0%)
Query 37 HKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAG 71
H ++ GEAVG++A QS+GEP TQ+TL TFH G
Sbjct 310 HGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGG 344
> eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta
prime subunit (EC:2.7.7.6); K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=1407
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%), Gaps = 0/31 (0%)
Query 41 MQPGEAVGVVAAQSVGEPATQMTLNTFHLAG 71
+ GEA+GV+AAQS+GEP TQ+T+ TFH+ G
Sbjct 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939
> tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2.7.7.6);
K03046 DNA-directed RNA polymerase subunit beta'
[EC:2.7.7.6]
Length=363
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 0/26 (0%)
Query 48 GVVAAQSVGEPATQMTLNTFHLAGHG 73
G+++ Q++GEP+TQM L TFHL G G
Sbjct 221 GIISGQALGEPSTQMLLRTFHLGGGG 246
> tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein
(EC:2.7.7.6)
Length=357
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 0/27 (0%)
Query 45 EAVGVVAAQSVGEPATQMTLNTFHLAG 71
+++GV+ +S+GEP TQMTL TFH G
Sbjct 169 QSMGVLIGESIGEPVTQMTLRTFHTGG 195
> bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=355
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 37 HKSCMQPGEAVGVVAAQSVGEPATQMTLNTFHLAGHGAAN 76
+K G G ++AQ++GEP+TQM L TFHL A N
Sbjct 208 YKDISLSGYCKGTISAQALGEPSTQMLLRTFHLGDKPALN 247
> bbo:BBOV_II005240 18.m06433; SNAP protein
Length=282
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 0/21 (0%)
Query 10 QQQQQQQDVYRCGIGAAELQQ 30
+QQQQ QD YRC + AA L +
Sbjct 43 KQQQQWQDAYRCYLEAANLGE 63
> cel:T08G11.1 hypothetical protein
Length=3185
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 0/32 (0%)
Query 36 YHKSCMQPGEAVGVVAAQSVGEPATQMTLNTF 67
Y C GEA+GV + S GE + + L++F
Sbjct 2393 YETLCHMDGEAIGVEVSVSTGESSVAIHLSSF 2424
> dre:555319 ccdc39; coiled-coil domain containing 39-like
Length=604
Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 0/31 (0%)
Query 3 QWYSKQQQQQQQQQDVYRCGIGAAELQQLLR 33
QW + +Q +++ QD+ +C + AEL Q +R
Sbjct 226 QWENTIEQMRKRDQDIQQCAMMLAELNQTIR 256
Lambda K H
0.318 0.127 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2053886800
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40