bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_7225_orf1 Length=115 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_070830 small nuclear ribonucleoprotein Sm D2, putat... 156 2e-38 cpv:cgd4_3190 small nuclear ribonucleoprotein ; K11096 small n... 142 2e-34 tpv:TP02_0729 small nuclear ribonucleoprotein D2; K11096 small... 137 6e-33 bbo:BBOV_I004230 19.m02306; small nuclear ribonucleoprotein; K... 137 7e-33 ath:AT2G47640 small nuclear ribonucleoprotein D2, putative / s... 127 7e-30 ath:AT3G62840 hypothetical protein 127 8e-30 pfa:PFB0865w small nuclear ribonucleoprotein, putative; K11096... 127 1e-29 cel:C52E4.3 snr-4; Small Nuclear Ribonucleoprotein family memb... 111 7e-25 mmu:107686 Snrpd2, 1810009A06Rik, MGC62953, SMD2; small nuclea... 110 8e-25 hsa:6633 SNRPD2, SMD2, SNRPD1, Sm-D2; small nuclear ribonucleo... 110 8e-25 dre:550244 snrpd2, im:6908977, si:dkey-113g17.2, zgc:110732; s... 110 8e-25 xla:100381103 snrpd2, sm-d2, smd2, snrpd1; small nuclear ribon... 110 9e-25 mmu:100043618 Gm10120; small nuclear ribonucleoprotein D2 pseu... 110 1e-24 mmu:545531 Gm5848, EG545531; predicted pseudogene 5848 109 2e-24 sce:YLR275W SMD2; Sm D2; K11096 small nuclear ribonucleoprotei... 101 7e-22 cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA... 55.5 5e-08 cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 54.3 1e-07 tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 53.5 2e-07 ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 53.1 2e-07 mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 52.4 4e-07 hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 52.4 4e-07 xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 52.0 4e-07 ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRN... 51.2 7e-07 bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K... 49.7 3e-06 pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associ... 48.9 4e-06 bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 43.9 1e-04 ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 43.5 2e-04 tpv:TP02_0106 hypothetical protein; K12622 U6 snRNA-associated... 43.5 2e-04 sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 43.5 2e-04 ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 41.2 7e-04 cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 38.1 0.006 cpv:cgd7_4580 U6 snRNA-associated Sm-like protein LSm5. SM dom... 38.1 0.006 mmu:72290 Lsm11, 2210404M20Rik, AV079530; U7 snRNP-specific Sm... 37.4 0.013 dre:100004030 lsm11, im:7149708; LSM11, U7 small nuclear RNA a... 37.0 0.016 hsa:134353 LSM11, FLJ38273; LSM11, U7 small nuclear RNA associ... 35.8 0.038 tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 35.4 0.049 cel:C49H3.4 hypothetical protein 32.3 0.36 mmu:67873 Mri1, 2410018C20Rik; methylthioribose-1-phosphate is... 32.0 0.45 cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family memb... 32.0 0.56 mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325, Pe... 31.6 0.61 hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912, ... 31.6 0.61 dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear ri... 31.6 0.64 xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-a... 31.2 0.74 sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heterohep... 31.2 0.76 mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;... 31.2 0.95 hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-... 31.2 0.95 xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb', s... 30.8 1.1 mmu:17288 Mep1b, MGC159330, Mep-1b; meprin 1 beta (EC:3.4.24.6... 30.4 1.5 dre:100151009 mep1b, MGC153272, si:ch211-191a24.6, zgc:153272;... 30.0 1.7 cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); ... 30.0 1.9 > tgo:TGME49_070830 small nuclear ribonucleoprotein Sm D2, putative ; K11096 small nuclear ribonucleoprotein D2 Length=104 Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 73/94 (77%), Positives = 85/94 (90%), Gaps = 0/94 (0%) Query 22 NRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTR 81 NRD+P GPL++L+ V DNSQVL+NCRNNRK+L RVKAFDRHCNL+LTDVREMW+E ++ Sbjct 11 NRDHPPEGPLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWTETSK 70 Query 82 GGGKKKQKVVNKDRFISKLFLRGDAVILILKNPK 115 GGGKKK + VNKDRFISKLFLRGDAVILIL+NPK Sbjct 71 GGGKKKVRTVNKDRFISKLFLRGDAVILILRNPK 104 > cpv:cgd4_3190 small nuclear ribonucleoprotein ; K11096 small nuclear ribonucleoprotein D2 Length=106 Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 64/92 (69%), Positives = 77/92 (83%), Gaps = 0/92 (0%) Query 23 RDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRG 82 +DNP GPL+LL+ CV N+Q+LVNCRNNRK+L RVKAFDRHCNLLLTD RE+W+E + Sbjct 14 KDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKS 73 Query 83 GGKKKQKVVNKDRFISKLFLRGDAVILILKNP 114 G K K +NKDRFISKLF+RGD+VILILK+P Sbjct 74 GKKGSAKYINKDRFISKLFVRGDSVILILKSP 105 > tpv:TP02_0729 small nuclear ribonucleoprotein D2; K11096 small nuclear ribonucleoprotein D2 Length=106 Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 66/109 (60%), Positives = 84/109 (77%), Gaps = 3/109 (2%) Query 7 MAAAADGDKAAPHLVNRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCN 66 M+ D L N+DNP GPL++L CV +N QVL+NCRNNRK+LARVKAFDRHCN Sbjct 1 MSTKVKQDPTPMELDNKDNP-AGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCN 59 Query 67 LLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFLRGDAVILILKNPK 115 ++LT+VREMW+ RG G K+K+ KDRF+S+LFLRGD+VI++LKNPK Sbjct 60 MILTNVREMWT--VRGKGTGKKKLETKDRFLSRLFLRGDSVIVVLKNPK 106 > bbo:BBOV_I004230 19.m02306; small nuclear ribonucleoprotein; K11096 small nuclear ribonucleoprotein D2 Length=162 Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 68/113 (60%), Positives = 85/113 (75%), Gaps = 11/113 (9%) Query 3 SKGIMAAAADGDKAAPHLVNRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFD 62 S GI + + DK P GPL++L CV DNSQVL+NCR+NRKLL RVKAFD Sbjct 61 SIGIRSMSTTEDKDCP---------SGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFD 111 Query 63 RHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFLRGDAVILILKNPK 115 RH N++LTDVREMW+EV+ GGGKK K +NKDR+IS+LFLRGD+V+++L NPK Sbjct 112 RHFNMILTDVREMWTEVSGGGGKK--KYMNKDRYISRLFLRGDSVVVVLSNPK 162 > ath:AT2G47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative; K11096 small nuclear ribonucleoprotein D2 Length=109 Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 59/88 (67%), Positives = 76/88 (86%), Gaps = 1/88 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGG-GKKK 87 GPL++L V +N+QVL+NCRNNRKLL RV+AFDRHCN++L +VREMW+EV + G GKKK Sbjct 22 GPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 81 Query 88 QKVVNKDRFISKLFLRGDAVILILKNPK 115 VN+DRFISK+FLRGD+VI++L+NPK Sbjct 82 ALPVNRDRFISKMFLRGDSVIIVLRNPK 109 > ath:AT3G62840 hypothetical protein Length=108 Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 59/88 (67%), Positives = 76/88 (86%), Gaps = 1/88 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGG-GKKK 87 GPL++L V +N+QVL+NCRNNRKLL RV+AFDRHCN++L +VREMW+EV + G GKKK Sbjct 21 GPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 80 Query 88 QKVVNKDRFISKLFLRGDAVILILKNPK 115 VN+DRFISK+FLRGD+VI++L+NPK Sbjct 81 ALPVNRDRFISKMFLRGDSVIIVLRNPK 108 > pfa:PFB0865w small nuclear ribonucleoprotein, putative; K11096 small nuclear ribonucleoprotein D2 Length=101 Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/94 (75%), Positives = 81/94 (86%), Gaps = 2/94 (2%) Query 22 NRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTR 81 NRDNPE GPL LLS CV DN+QVL+NCRNNRK+L RVKAFDRHCNLLLT VRE+W EV + Sbjct 10 NRDNPEDGPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVK 69 Query 82 GGGKKKQKVVNKDRFISKLFLRGDAVILILKNPK 115 KKK+K +NKDR+IS LFLRGD+VILIL+NPK Sbjct 70 --DKKKKKKINKDRYISILFLRGDSVILILRNPK 101 > cel:C52E4.3 snr-4; Small Nuclear Ribonucleoprotein family member (snr-4); K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 65/113 (57%), Positives = 85/113 (75%), Gaps = 5/113 (4%) Query 7 MAAAAD--GDKAAPHLVNRDNPEG--GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFD 62 M+A A + A L +++ E GPL++L+ V +N QVL+NCRNN+KLL RVKAFD Sbjct 1 MSAQAKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFD 60 Query 63 RHCNLLLTDVREMWSEV-TRGGGKKKQKVVNKDRFISKLFLRGDAVILILKNP 114 RHCN++L +V+EMW+EV G GKKK K V KDRFISK+FLRGD+VIL++KNP Sbjct 61 RHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113 > mmu:107686 Snrpd2, 1810009A06Rik, MGC62953, SMD2; small nuclear ribonucleoprotein D2; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 57/87 (65%), Positives = 76/87 (87%), Gaps = 1/87 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSE-VTRGGGKKK 87 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+EMW+E G GKKK Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86 Query 88 QKVVNKDRFISKLFLRGDAVILILKNP 114 K VNKDR+ISK+FLRGD+VI++L+NP Sbjct 87 SKPVNKDRYISKMFLRGDSVIVVLRNP 113 > hsa:6633 SNRPD2, SMD2, SNRPD1, Sm-D2; small nuclear ribonucleoprotein D2 polypeptide 16.5kDa; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 57/87 (65%), Positives = 76/87 (87%), Gaps = 1/87 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSE-VTRGGGKKK 87 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+EMW+E G GKKK Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86 Query 88 QKVVNKDRFISKLFLRGDAVILILKNP 114 K VNKDR+ISK+FLRGD+VI++L+NP Sbjct 87 SKPVNKDRYISKMFLRGDSVIVVLRNP 113 > dre:550244 snrpd2, im:6908977, si:dkey-113g17.2, zgc:110732; small nuclear ribonucleoprotein D2 polypeptide; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 57/87 (65%), Positives = 76/87 (87%), Gaps = 1/87 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSE-VTRGGGKKK 87 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+EMW+E G GKKK Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86 Query 88 QKVVNKDRFISKLFLRGDAVILILKNP 114 K VNKDR+ISK+FLRGD+VI++L+NP Sbjct 87 SKPVNKDRYISKMFLRGDSVIVVLRNP 113 > xla:100381103 snrpd2, sm-d2, smd2, snrpd1; small nuclear ribonucleoprotein D2 polypeptide 16.5kDa; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 57/87 (65%), Positives = 76/87 (87%), Gaps = 1/87 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSE-VTRGGGKKK 87 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+EMW+E G GKKK Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86 Query 88 QKVVNKDRFISKLFLRGDAVILILKNP 114 K VNKDR+ISK+FLRGD+VI++L+NP Sbjct 87 SKPVNKDRYISKMFLRGDSVIVVLRNP 113 > mmu:100043618 Gm10120; small nuclear ribonucleoprotein D2 pseudogene Length=118 Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/87 (65%), Positives = 75/87 (86%), Gaps = 1/87 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSE-VTRGGGKKK 87 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+EMW+E G GKKK Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86 Query 88 QKVVNKDRFISKLFLRGDAVILILKNP 114 K VNKDR+ISK+FLRGD VI++L+NP Sbjct 87 SKPVNKDRYISKMFLRGDLVIVVLRNP 113 > mmu:545531 Gm5848, EG545531; predicted pseudogene 5848 Length=118 Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 53/87 (60%), Positives = 73/87 (83%), Gaps = 1/87 (1%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQ 88 GPL++LS+ V +N+QVL+NCRN +KLL RVKAFDRHCN++L +V+EMW+EV + KK+ Sbjct 27 GPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKK 86 Query 89 KV-VNKDRFISKLFLRGDAVILILKNP 114 VNKD +ISK+FLRGD+VI++L+NP Sbjct 87 SKPVNKDCYISKIFLRGDSVIVVLRNP 113 > sce:YLR275W SMD2; Sm D2; K11096 small nuclear ribonucleoprotein D2 Length=110 Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 44/86 (51%), Positives = 69/86 (80%), Gaps = 6/86 (6%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQ 88 GP++L++ ++ + V+++ RNN K++ARVKAFDRHCN++L +V+E+W+E KK + Sbjct 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------KKGK 82 Query 89 KVVNKDRFISKLFLRGDAVILILKNP 114 V+N++RFISKLFLRGD+VI++LK P Sbjct 83 NVINRERFISKLFLRGDSVIVVLKTP 108 > cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=95 Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query 30 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQK 89 PL L+ R LD QV V CR NR+L + A+D H N++L +V E + E + + Sbjct 7 PLDLI-RLSLD-EQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSE 64 Query 90 VVNKDRFISKLFLRGDAVILI 110 K R I LFLRGD +IL+ Sbjct 65 KKLKKRRIEMLFLRGDLIILV 85 > cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 6/83 (7%) Query 30 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQK 89 PL LL R LD +V V RN+R+L R++AFD+H N++L++V E + TR + + Sbjct 17 PLDLL-RLSLDE-RVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT--TREVDEDTFE 72 Query 90 VVNKD--RFISKLFLRGDAVILI 110 + K R + LF+RGD+VIL+ Sbjct 73 EIYKQTKRVVPMLFVRGDSVILV 95 > tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=96 Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 0/70 (0%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKL 100 + +V + CR +R+++ ++ A+D H N++L DV E+ + VT ++ R + + Sbjct 19 DERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTKKTTRRLPLI 78 Query 101 FLRGDAVILI 110 FLRGDA+IL+ Sbjct 79 FLRGDAIILV 88 > ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=98 Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query 30 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQK 89 PL L+ R LD ++ V R++R+L ++ AFD+H N++L DV E + V ++ Sbjct 12 PLDLI-RLSLDE-RIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69 Query 90 VVNKDRFISKLFLRGDAVILI 110 V R I LF+RGD VIL+ Sbjct 70 VRTTKRTIEFLFVRGDGVILV 90 > mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query 30 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQK 89 PL L+ R LD ++ V RN+R+L R+ A+D+H N++L DV E + + ++ Sbjct 17 PLDLI-RLSLD-ERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query 90 VVNKDRFISKLFLRGDAVILI 110 + R I LF+RGD V+L+ Sbjct 75 YKSTKRNIPMLFVRGDGVVLV 95 > hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query 30 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQK 89 PL L+ R LD ++ V RN+R+L R+ A+D+H N++L DV E + + ++ Sbjct 17 PLDLI-RLSLD-ERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query 90 VVNKDRFISKLFLRGDAVILI 110 + R I LF+RGD V+L+ Sbjct 75 YKSTKRNIPMLFVRGDGVVLV 95 > xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query 30 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQK 89 PL L+ R LD ++ V RN+R+L R+ A+D+H N++L DV E + + ++ Sbjct 17 PLDLI-RLSLD-ERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query 90 VVNKDRFISKLFLRGDAVILI 110 + R I LF+RGD V+L+ Sbjct 75 YKSTKRNIPMLFVRGDGVVLV 95 > ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=97 Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query 21 VNRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVT 80 V D PL L+ + ++ V R++R+L ++ AFD+H N++L DV E+ + + Sbjct 3 VEEDATVREPLDLIRLSI--EERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60 Query 81 RGGGKKKQKVVNKDRFISKLFLRGDAVILI 110 ++ V R + LF+RGD VIL+ Sbjct 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILV 90 > bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=89 Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWS--EVTRGGGKKKQKVVNKDRFIS 98 + +V + C+ R+++ ++ A+D HCN+LL+D E ++ E+ ++ + +KD + Sbjct 14 DERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEVTTITSKDSGV- 72 Query 99 KLFLRGDAVILI 110 +F+RGDA+IL+ Sbjct 73 -VFVRGDALILL 83 > pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=91 Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query 42 SQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLF 101 ++ + C+ +R+L+ ++ A+D H N++L++VRE + + ++ V +R + +F Sbjct 20 EEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKEND--EETVKKMERNLDMVF 77 Query 102 LRGDAVILI 110 +RGD++IL+ Sbjct 78 VRGDSIILV 86 > bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K11086 small nuclear ribonucleoprotein B and B' Length=159 Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query 44 VLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFLR 103 V V ++ RK + AFD+H NL+L D E +T+G G KQKV K R + + LR Sbjct 16 VRVAIKDGRKFVGTFIAFDKHMNLVLADCEEF--RITKGKGPDKQKVELK-RTLGFIMLR 72 Query 104 GDAVI 108 G+ ++ Sbjct 73 GENIV 77 > ath:AT5G44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative; K11086 small nuclear ribonucleoprotein B and B' Length=254 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 0/68 (0%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKL 100 N ++ V ++ R+L+ + AFDRH NL+L D E G KK + + R + + Sbjct 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLV 73 Query 101 FLRGDAVI 108 LRG+ VI Sbjct 74 LLRGEEVI 81 > tpv:TP02_0106 hypothetical protein; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=84 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 0/45 (0%) Query 44 VLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQ 88 + + C+N R+L+ R++AFD HCN++L++V E + V K + Sbjct 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNNSKNE 66 > sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=89 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKL 100 + +V + R R L+ ++AFD HCN++L+D E ++ +++ +R + Sbjct 13 DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQL------NNEELSESERRCEMV 66 Query 101 FLRGDAVILI 110 F+RGD V LI Sbjct 67 FIRGDTVTLI 76 > ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated protein B); K11086 small nuclear ribonucleoprotein B and B' Length=257 Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKL 100 N ++ V ++ R+L+ + AFDRH NL+L D E + ++ GKK + R + + Sbjct 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPAKGKKINEEREDRRTLGLV 72 Query 101 FLRGDAVI 108 LRG+ VI Sbjct 73 LLRGEEVI 80 > cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein B and B' Length=139 Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKL 100 N ++ V +++R ++ + AFDRH NL+L+D +E + V +G K+ K R + + Sbjct 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQE-YRRVKKGEESKELK-----RSLGLI 59 Query 101 FLRGDAVILIL 111 LRG+ ++ + Sbjct 60 MLRGENIVTFV 70 > cpv:cgd7_4580 U6 snRNA-associated Sm-like protein LSm5. SM domain ; K12624 U6 snRNA-associated Sm-like protein LSm5 Length=121 Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query 25 NPEGG----PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMW---S 77 N +GG PL L+ +C+ +++ V + +++ ++ FD + N++L DV+E Sbjct 20 NQKGGNIILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKAD 77 Query 78 EVTRGGGKKKQKVVNKDRFISKLFLRGDAVILIL 111 E GG KK K V +R + + L G+ V +++ Sbjct 78 EEDISGGNKKLKRVMVNR-LETILLSGNNVAMLV 110 > mmu:72290 Lsm11, 2210404M20Rik, AV079530; U7 snRNP-specific Sm-like protein LSM11 Length=361 Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Query 15 KAAPHLVNRDNP--EGGPLTLLSRCVLDNSQVLVNCRNNRKL----LARVKAFDRHCNLL 68 K AP V P EG PL L RC+ + +V V+ R + L + AFD+ N+ Sbjct 139 KKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMA 198 Query 69 LTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFLR 103 LTDV E + + G ++ + R +L L+ Sbjct 199 LTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQ 233 > dre:100004030 lsm11, im:7149708; LSM11, U7 small nuclear RNA associated Length=363 Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query 28 GGPLTLLSRCVLDNSQVLVNCRNNRKLLAR----VKAFDRHCNLLLTDVREMWSEVTRGG 83 G PL L+RCV + +V V+ R + L V AFD+ NL + DV E + E G Sbjct 189 GSPLGQLNRCVQEKIRVKVHIRTFKGLRGVCSGFVVAFDKFWNLAMVDVDETYREPLLGQ 248 Query 84 GKKKQKVVNKDRFISKLFLRGDAVI 108 +K + R KL ++ A + Sbjct 249 ALYHEKALTITRLFEKLKVQETAAL 273 > hsa:134353 LSM11, FLJ38273; LSM11, U7 small nuclear RNA associated Length=360 Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query 27 EGGPLTLLSRCVLDNSQVLVNCRNNRKL----LARVKAFDRHCNLLLTDVREMWSEVTRG 82 EG PL L RC+ + +V V+ R + L + AFD+ N+ LTDV E + + G Sbjct 152 EGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMALTDVDETYRKPVLG 211 Query 83 GGKKKQKVVNKDRFISKLFLR 103 ++ + R +L L+ Sbjct 212 KAYERDSSLTLTRLFDRLKLQ 232 > tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein B and B' Length=155 Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query 44 VLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFLR 103 V V ++NRK + + A+D++ NL+L+D E +T G K + +V R + + LR Sbjct 16 VRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEF--RMTLGKDKNRTEV---KRTLGFVLLR 70 Query 104 GDAVI 108 G+ ++ Sbjct 71 GENIV 75 > cel:C49H3.4 hypothetical protein Length=223 Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 38/120 (31%) Query 29 GPLTLLSRCVLDNSQVLVNCRN----NRKLLARVKAFDRHCNLLLTDVREM--------- 75 GP+++++ V++ ++ V R+ +R FD H NL++ DV E Sbjct 108 GPMSMIANAVINQKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTETVLHGRKAQK 167 Query 76 -----------------WSEVTRGGGKKKQKV----VNKDRFISKLFLRGDAVILILKNP 114 W E GG KV + + RF F++GD+V+L+ P Sbjct 168 EFTNRKEMQLLLPEFLRWKE----GGNWPMKVGTNRLIEHRFQRACFIKGDSVVLVRMLP 223 > mmu:67873 Mri1, 2410018C20Rik; methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Length=369 Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 0/25 (0%) Query 13 GDKAAPHLVNRDNPEGGPLTLLSRC 37 GD A HL+ + NP GG +T+L+ C Sbjct 144 GDLGARHLLEQTNPRGGKVTVLTHC 168 > cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family member (snr-2); K11086 small nuclear ribonucleoprotein B and B' Length=160 Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query 41 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKL 100 N ++ + ++ R + KAFD+H N+LL + E ++ GKK + R + + Sbjct 14 NYRMKIILQDGRTFIGFFKAFDKHMNILLAECEE-HRQIKPKAGKKTDG--EEKRILGLV 70 Query 101 FLRGDAVI 108 +RG+ ++ Sbjct 71 LVRGEHIV 78 > mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325, Peg4, SMN; small nuclear ribonucleoprotein N; K11100 small nuclear ribonucleoprotein N Length=240 Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC+L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCILQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NAKQPEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912, DKFZp762N022, FLJ33569, FLJ36996, FLJ39265, HCERN3, MGC29886, PWCR, RT-LI, SM-D, SMN, SNRNP-N, SNURF-SNRPN; small nuclear ribonucleoprotein polypeptide N; K11100 small nuclear ribonucleoprotein N Length=240 Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC+L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCILQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NAKQPEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear ribonucleoprotein polypeptides B and B1; K11086 small nuclear ribonucleoprotein B and B' Length=239 Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC+L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCILQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NSKQPEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, clone Sm51; K11086 small nuclear ribonucleoprotein B and B' Length=236 Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC+L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCILQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NSKQPEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) involved in degradation of cytoplasmic mRNAs; K12620 U6 snRNA-associated Sm-like protein LSm1 Length=172 Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query 43 QVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFL 102 ++ V R+ R L ++ FD++ NL+L D V R ++ K +DR I + Sbjct 53 KIFVLLRDGRMLFGVLRTFDQYANLILQDC------VERIYFSEENKYAEEDRGI--FMI 104 Query 103 RGDAVILI 110 RG+ V+++ Sbjct 105 RGENVVML 112 > mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B; small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein B and B' Length=231 Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC+L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCILQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NSKQAEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-B; small nuclear ribonucleoprotein polypeptides B and B1; K11086 small nuclear ribonucleoprotein B and B' Length=231 Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC+L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCILQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NSKQAEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb', snrnp-b, snrpb1; small nuclear ribonucleoprotein polypeptides B and B1; K11086 small nuclear ribonucleoprotein B and B' Length=234 Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Query 36 RCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDR 95 RC L + ++ + KAFD+H NL+L D E + KQ + R Sbjct 18 RCTLQDGRIFIGT---------FKAFDKHMNLILCDCDEFRKIKPK---NSKQPEREEKR 65 Query 96 FISKLFLRGDAVI 108 + + LRG+ ++ Sbjct 66 VLGLVLLRGENLV 78 > mmu:17288 Mep1b, MGC159330, Mep-1b; meprin 1 beta (EC:3.4.24.63); K08606 meprin A, beta [EC:3.4.24.18] Length=704 Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 0/51 (0%) Query 61 FDRHCNLLLTDVREMWSEVTRGGGKKKQKVVNKDRFISKLFLRGDAVILIL 111 +DR + +TDV ++ +RG G + ++R S+ F++GD + ++L Sbjct 534 WDRPSKVGVTDVFPNGTQFSRGIGYGTTVFITRERLKSREFIKGDDIYILL 584 > dre:100151009 mep1b, MGC153272, si:ch211-191a24.6, zgc:153272; meprin A, beta (EC:3.4.24.18); K08606 meprin A, beta [EC:3.4.24.18] Length=677 Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Query 71 DVREMWSEVT--------RGGGKKKQKVVNKDRFISKLFLRGDAVILIL 111 D R++ S VT RG G + DR S+ F++GD VI +L Sbjct 548 DPRKVGSRVTDTDGSTFYRGSGYGTSSFITHDRLKSRSFIKGDDVIFLL 596 > cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); K12620 U6 snRNA-associated Sm-like protein LSm1 Length=125 Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query 29 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVRE 74 G ++L + + ++LV R+ RKL+ +++ D+ NL+L DV E Sbjct 10 GAISLFEQL---DKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2042676840 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40