bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_6811_orf2 Length=130 Score E Sequences producing significant alignments: (Bits) Value pfa:MAL13P1.189 conserved Plasmodium membrane protein, unknown... 63.9 1e-10 xla:398468 lmbrd1; LMBR1 domain containing 1; K14617 LMBR1 dom... 34.3 0.089 hsa:6542 SLC7A2, ATRC2, CAT2, HCAT2; solute carrier family 7 (... 29.6 2.4 bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 29.3 3.5 tgo:TGME49_110140 hypothetical protein ; K14617 LMBR1 domain-c... 28.9 3.9 cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 28.9 4.6 cpv:cgd2_2140 hypothetical protein 28.5 5.4 xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed... 28.1 6.3 ath:AT5G19310 homeotic gene regulator, putative; K11647 SWI/SN... 28.1 7.3 mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 28.1 7.8 hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 28.1 7.8 > pfa:MAL13P1.189 conserved Plasmodium membrane protein, unknown function; K14617 LMBR1 domain-containing protein 1 Length=530 Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query 1 QQRQLQIKYAGGLH-EMRPEDSEALEKLRVQQRLCSERNYKLQEAEQAHRSAYSLLCRLM 59 +++++ IK ++ E++ D + + K+ +R+ S+ NYKLQE E+ S S L ++ Sbjct 231 KEKEIMIKNKYNINCEIKETDKDEMLKIEKMKRVLSKYNYKLQEIEKLSESWLSYLIGIV 290 Query 60 LPFRKTVGLVLLLLLLLLFVSLGTVLIRRLEGSTCGWSCGFATQSSEGPSTPANAALLFL 119 FR G++ L ++++SL + + S C + CGF + + L+F Sbjct 291 FTFRLLTGMIFLAFSFIIYISLLASITDKYFNSICAYKCGFVLEQINTIFNLLDTLLIFF 350 Query 120 SSYPPTDLWLV 130 S + P D+ ++ Sbjct 351 SKFFPLDILII 361 > xla:398468 lmbrd1; LMBR1 domain containing 1; K14617 LMBR1 domain-containing protein 1 Length=537 Score = 34.3 bits (77), Expect = 0.089, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query 16 MRPEDSEALEKLRVQQRLCSERNYKLQEAEQAHRSAYSLLCRLMLPFRKTVGLVLLLLLL 75 + +D +AL KL+ + R ++ L+ E + ++ C +M PF+ G++ +L+ L Sbjct 259 LSSKDRQALYKLQEKLRTLKRKDRHLEHHEN---NCWTKCCLVMRPFKIVWGILFILVAL 315 Query 76 LLFVSL 81 L VSL Sbjct 316 LFIVSL 321 > hsa:6542 SLC7A2, ATRC2, CAT2, HCAT2; solute carrier family 7 (cationic amino acid transporter, y+ system), member 2; K13864 solute carrier family 7 (cationic amino acid transporter), member 2 Length=658 Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 0/78 (0%) Query 5 LQIKYAGGLHEMRPEDSEALEKLRVQQRLCSERNYKLQEAEQAHRSAYSLLCRLMLPFRK 64 L ++Y GL +P+ S + L R+ S+ ++ ++ S +L C +LP ++ Sbjct 430 LILRYQPGLSYDQPKCSPEKDGLGSSPRVTSKSESQVTMLQRQGFSMRTLFCPSLLPTQQ 489 Query 65 TVGLVLLLLLLLLFVSLG 82 + LV L+ L F+ LG Sbjct 490 SASLVSFLVGFLAFLVLG 507 > bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta subunit family protein (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1207 Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query 37 RNYKLQEAEQAHRSAYSLLCRLMLPFRKTVGLVLLLLLLLLFVSLGT 83 R K+ + Q H + + ++C P + VGLV L L+ F+S+GT Sbjct 534 REGKIAKPRQLHNTHWGMICPAETPEGQAVGLV-KNLALMCFISVGT 579 > tgo:TGME49_110140 hypothetical protein ; K14617 LMBR1 domain-containing protein 1 Length=728 Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query 83 TVLIRRLEGSTCGWSCGF-----ATQSSEGPSTPANAALLFLSSYPPTDLWLV 130 T ++RLE S C +SCGF AT P + L+ LS + P D LV Sbjct 475 TYRLQRLEFSRCTYSCGFVLDDDATAREGVLFNPLDELLVRLSQFFPADFLLV 527 > cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member (rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1193 Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%) Query 14 HEMRPEDSEALEKLRVQQRLCSERNY--------KLQEAEQAHRSAYSLLCRLMLPFRKT 65 H+ R S+ L +L L R KL + Q H + + ++C P + Sbjct 466 HQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQA 525 Query 66 VGLVLLLLLLLLFVSLGTV---LIRRLEGSTCGWSCGFATQSSEGPSTPANAALLFLS 120 VGLV L L+ ++S+G++ ++ LE WS + S PS A+A +F++ Sbjct 526 VGLV-KNLALMAYISVGSLPEPILEFLE----EWSMENLEEVS--PSAIADATKIFVN 576 > cpv:cgd2_2140 hypothetical protein Length=1818 Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 58 LMLPFRKTVGLVLLLLLLLLFVSLGTVL 85 +ML FRK +G+ L+ L++L ++LG ++ Sbjct 437 IMLFFRKIIGIFFLINLIILTLALGIII 464 > xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=949 Score = 28.1 bits (61), Expect = 6.3, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Query 14 HEMRPEDSEALEKLRVQ------QRLCSE--RNYKLQEAEQAHRSAYSLLCRLMLPFRKT 65 H+ R S+ L +L +RL S R+ KL + Q H + + ++C P Sbjct 460 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 519 Query 66 VGLVLLLLLLLLFVSLGT 83 VGLV L L+ ++S+G+ Sbjct 520 VGLV-KNLALMAYISVGS 536 > ath:AT5G19310 homeotic gene regulator, putative; K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] Length=1064 Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 19/117 (16%) Query 12 GLHEMRPEDSEALEKLRVQQRLCSER-------NYKLQEAEQAHRSA--YSLLCRLMLPF 62 GLH + S++L+ L +Q R C +Y + + + R++ + LL RL LP Sbjct 649 GLHSGNGK-SKSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDRL-LPK 706 Query 63 RKTVGLVLLLL--------LLLLFVSLGTVLIRRLEGSTCGWSCGFATQSSEGPSTP 111 K G +LL LL +++SL + RL+GST G + P +P Sbjct 707 LKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSP 763 > mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase (RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 28.1 bits (61), Expect = 7.8, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Query 14 HEMRPEDSEALEKLRVQ------QRLCSE--RNYKLQEAEQAHRSAYSLLCRLMLPFRKT 65 H+ R S+ L +L +RL S R+ KL + Q H + + ++C P Sbjct 460 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519 Query 66 VGLVLLLLLLLLFVSLGT 83 VGLV L L+ ++S+G+ Sbjct 520 VGLV-KNLALMAYISVGS 536 > hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 28.1 bits (61), Expect = 7.8, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Query 14 HEMRPEDSEALEKLRVQ------QRLCSE--RNYKLQEAEQAHRSAYSLLCRLMLPFRKT 65 H+ R S+ L +L +RL S R+ KL + Q H + + ++C P Sbjct 460 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519 Query 66 VGLVLLLLLLLLFVSLGT 83 VGLV L L+ ++S+G+ Sbjct 520 VGLV-KNLALMAYISVGS 536 Lambda K H 0.322 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2039374804 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40