bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_6698_orf1
Length=182
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helica... 343 2e-94
cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing he... 283 2e-76
dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-... 282 4e-76
hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-... 282 5e-76
mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,... 282 6e-76
bbo:BBOV_III000950 17.m07111; sec63 domain containing protein ... 280 1e-75
hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase... 280 2e-75
ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / A... 266 2e-71
ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, put... 255 5e-68
tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-spli... 249 5e-66
pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific prote... 242 5e-64
cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the sec... 233 4e-61
sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.... 215 7e-56
ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6... 185 7e-47
hsa:10973 ASCC3, ASC1p200, DJ467N11.1, HELIC1, MGC26074, RNAH,... 177 1e-44
mmu:77987 Ascc3, ASC1p200, B630009I04Rik, BC023451, D430001L07... 172 5e-43
tgo:TGME49_049810 activating signal cointegrator 1 complex sub... 153 3e-37
cel:Y54E2A.6 hypothetical protein; K01529 [EC:3.6.1.-] 151 1e-36
bbo:BBOV_I001530 19.m02171; helicase 142 6e-34
pfa:PF14_0370 DEAD/DEAH box helicase, putative; K01509 adenosi... 142 8e-34
tpv:TP01_0582 RNA helicase 141 1e-33
sce:YGR271W SLH1; Putative RNA helicase related to Ski2p, invo... 137 3e-32
cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helica... 135 1e-31
mmu:330149 Hfm1, A330009G12Rik, Gm1046, Sec63d1; HFM1, ATP-dep... 117 1e-26
ath:AT3G27730 RCK; RCK (ROCK-N-ROLLERS); ATP binding / ATP-dep... 114 2e-25
hsa:164045 HFM1, FLJ36760, FLJ39011, MER3, MGC163397, RP11-539... 112 7e-25
dre:557052 hfm1, si:ch211-83f14.5; HFM1, ATP-dependent DNA hel... 111 1e-24
sce:YGL251C HFM1, MER3; Hfm1p (EC:3.6.1.-); K01529 [EC:3.6.1.-] 102 7e-22
ath:AT4G32700 DNA-directed DNA polymerase family protein; K023... 84.7 1e-16
mmu:191578 Helq, AU021725, D430018E21Rik, Hel308, MGC105224; h... 82.8 6e-16
dre:100330111 mutagen-sensitive 308-like 82.0 1e-15
dre:562952 helq, hel308, si:ch211-85e10.2; helicase, POLQ-like 82.0 1e-15
hsa:10721 POLQ, DKFZp781A0112, POLH, PRO0327; polymerase (DNA ... 81.3 2e-15
hsa:113510 HELQ, HEL308, MGC20604; helicase, POLQ-like (EC:3.6... 79.7 5e-15
cel:Y55B1AL.3 hel-308; HELicase family member (hel-308) 77.8 2e-14
cel:F01G4.3 hypothetical protein; K12599 antiviral helicase SK... 77.4 3e-14
dre:566079 bZ1P14.5; si:rp71-1p14.5; K02349 DNA polymerase the... 77.4 3e-14
cel:W03A3.2 polq-1; POLQ (DNA polymerase theta) homolog family... 74.7 1e-13
sce:YLR398C SKI2; Ski complex component and putative RNA helic... 74.7 2e-13
ath:AT1G59760 ATP-dependent RNA helicase, putative; K12598 ATP... 71.6 1e-12
tpv:TP04_0364 hypothetical protein; K12599 antiviral helicase ... 69.7 6e-12
dre:559653 skiv2l, fb70b07, wu:fb70b07; superkiller viralicidi... 69.3 6e-12
cel:W08D2.7 mtr-4; yeast MTR (mRNA TRansport) homolog family m... 68.2 1e-11
cel:C28H8.3 hypothetical protein; K01529 [EC:3.6.1.-] 67.8 2e-11
hsa:6499 SKIV2L, 170A, DDX13, HLP, SKI2, SKI2W, SKIV2; superki... 67.8 2e-11
ath:AT1G70070 EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP-dependen... 67.4 2e-11
mmu:108077 Skiv2l, 4930534J06Rik, AW214248, Ddx13, SKI, Ski2w;... 67.4 3e-11
ath:AT3G46960 ATP binding / ATP-dependent helicase/ helicase/ ... 67.0 4e-11
sce:YJL050W MTR4, DOB1; ATP-dependent 3'-5' RNA helicase, invo... 66.6 5e-11
mmu:72198 Skiv2l2, 2610528A15Rik, mKIAA0052; superkiller viral... 66.6 5e-11
> tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helicase,
putative ; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2198
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 162/181 (89%), Positives = 173/181 (95%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGK+QVLIFVHSRKE VKTA+FI D A+Q+DTLPRFLQ +ASREILQ+EAEAVKT D
Sbjct 768 ESAGKSQVLIFVHSRKETVKTARFIRDMAMQRDTLPRFLQHMTASREILQSEAEAVKTGD 827
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LK+LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV
Sbjct 828 LKELLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 887
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
YLPEKGAW+ELSPMD+LQMMGRAGRPQYDT GHAILITQHSELQ+YLSLNNQQLPIESQM
Sbjct 888 YLPEKGAWAELSPMDVLQMMGRAGRPQYDTSGHAILITQHSELQYYLSLNNQQLPIESQM 947
Query 181 I 181
+
Sbjct 948 L 948
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query 7 QVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLP 66
V++F R+ TA + A D +FL S E+++ V+ + L + L
Sbjct 1623 NVIVFCSDRRHCRLTAIDLLLQAAADDDPKKFLH---VSDEVMRKYTSVVRDKMLSETLA 1679
Query 67 YGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKG 126
YG + H+GL +++LV+ L A IQV+V AWG+ + AH V+I T+ + +
Sbjct 1680 YGVGLLHSGLSAAEQQLVQQLHAAGAIQVVVVAEECAWGLQMYAHLVVIVDTKKF--TEN 1737
Query 127 AWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMIQ 182
+ + + D+LQM+G A RP D G A+L S+ +FY + LP+ESQ+ Q
Sbjct 1738 GYEDYTVADVLQMLGHATRPSIDKHGFAVLFCPSSKREFYKKFVFEPLPVESQLEQ 1793
> cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2145
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 151/181 (83%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGK+QVL+FVHSRKE KTAK I DA L+KDTL F++ SAS EIL+ EAE K D
Sbjct 707 EHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLD 766
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LKDLLPYGFA+HHAG+ R DR LVEDLFADRHIQVL STATLAWGVNLPAHTVIIKGTQ+
Sbjct 767 LKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQI 826
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y PEKG W+EL +DI+QM+GRAGRPQYD G ILIT HSELQ+YLSL NQQLP+ESQM
Sbjct 827 YNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQM 886
Query 181 I 181
+
Sbjct 887 V 887
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
Query 9 LIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPYG 68
L+FV R++ A + AL RFL+ + + QA ++ + L++ + G
Sbjct 1557 LVFVPVRRQTRPVAVALLTMALADGAPKRFLR-LAEHDDTFQALLADIEDESLRESVSCG 1615
Query 69 FAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGAW 128
H G D +V+ LF IQV V + + + + A+ V++ TQ Y + +
Sbjct 1616 VGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVY 1675
Query 129 SELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ D+L M+G A RP D+ +++ Q S+ +Y LP+ES +
Sbjct 1676 EDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHL 1727
> dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2134
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/181 (75%), Positives = 151/181 (83%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGKNQVL+FVHSRKE KTA+ I D L+KDTL FL+ SAS E+L+ EAE K +
Sbjct 711 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLE 770
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LKDLLPYGFA+HHAG+ R DR LVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV
Sbjct 771 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 830
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y PEKG W+EL +DILQM+GRAGRPQYD+ G ILIT H ELQ+YLSL NQQLPIESQM
Sbjct 831 YSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQM 890
Query 181 I 181
+
Sbjct 891 V 891
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 96/177 (54%), Gaps = 11/177 (6%)
Query 8 VLIFVHSRKEAVKTAKFI---CDAALQKDTLP-RFLQSFSASREILQAEAEAVKTQDLKD 63
VL+FV SR++ TA I C A D +P RFL S + + L E + LK+
Sbjct 1555 VLVFVPSRRQTRLTAIDILTFCAA----DVVPQRFLHS---TEKDLVPFMENLSDVTLKE 1607
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
L G H GL T+R++VE LF IQV+V++ +L WG N+ AH VI+ TQ Y
Sbjct 1608 TLSNGVGYLHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNG 1667
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ A+ + D+LQM+G+A RP D G +++ Q S+ F+ + LP+ES +
Sbjct 1668 KIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHL 1724
> hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-200KD;
small nuclear ribonucleoprotein 200kDa (U5) (EC:3.6.4.13);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2136
Score = 282 bits (721), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 136/181 (75%), Positives = 151/181 (83%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGKNQVL+FVHSRKE KTA+ I D L+KDTL FL+ SAS E+L+ EAE K +
Sbjct 714 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLE 773
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LKDLLPYGFA+HHAG+ R DR LVEDLFAD+HIQVLVSTATLAWGVNLPAHTVIIKGTQV
Sbjct 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y PEKG W+EL +DILQM+GRAGRPQYDT G ILIT H ELQ+YLSL NQQLPIESQM
Sbjct 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQM 893
Query 181 I 181
+
Sbjct 894 V 894
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query 5 KNQVLIFVHSRKEAVKTAKFI---CDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDL 61
K V++FV SRK+ TA I C A +Q+ RFL + + L E + L
Sbjct 1556 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQ---RFLH---CTEKDLIPYLEKLSDSTL 1609
Query 62 KDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVY 121
K+ L G H GL +R+LVE LF+ IQV+V++ +L WG+N+ AH VII TQ Y
Sbjct 1610 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYY 1669
Query 122 LPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ A+ + D+LQM+G A RP D G +++ Q S+ F+ + LP+ES +
Sbjct 1670 NGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHL 1728
> mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,
KIAA0788, U5-200-KD, U5-200KD; small nuclear ribonucleoprotein
200 (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase
BRR2 [EC:3.6.4.13]
Length=2136
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 136/181 (75%), Positives = 151/181 (83%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGKNQVL+FVHSRKE KTA+ I D L+KDTL FL+ SAS E+L+ EAE K +
Sbjct 714 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLE 773
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LKDLLPYGFA+HHAG+ R DR LVEDLFAD+HIQVLVSTATLAWGVNLPAHTVIIKGTQV
Sbjct 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y PEKG W+EL +DILQM+GRAGRPQYDT G ILIT H ELQ+YLSL NQQLPIESQM
Sbjct 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQM 893
Query 181 I 181
+
Sbjct 894 V 894
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query 5 KNQVLIFVHSRKEAVKTAKFI---CDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDL 61
K V++FV SRK+ TA I C A +Q+ RFL + + L E + L
Sbjct 1556 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQ---RFLH---CTEKDLIPYLEKLSDSTL 1609
Query 62 KDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVY 121
K+ L G H GL +R+LVE LF+ IQV+V++ +L WG+N+ AH VII TQ Y
Sbjct 1610 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYY 1669
Query 122 LPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ A+ + D+LQM+G A RP D G +++ Q S+ F+ + LP+ES +
Sbjct 1670 NGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHL 1728
> bbo:BBOV_III000950 17.m07111; sec63 domain containing protein
(EC:3.6.1.-); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2133
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/181 (71%), Positives = 152/181 (83%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGKNQVL+FVHSRKE +TAK I D A + D L FL S SASREIL E+EA+KT +
Sbjct 713 EDAGKNQVLVFVHSRKETARTAKLIRDMAFKTDNLGIFLHSDSASREILSTESEAIKTTE 772
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LK+LLPYG +HHAGLPR+DRKLVEDLF+D HIQ+L+STATL+WGVNLPAHTVIIKGTQV
Sbjct 773 LKELLPYGLGIHHAGLPRSDRKLVEDLFSDGHIQLLISTATLSWGVNLPAHTVIIKGTQV 832
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y PE+G W+EL P+ + QM+GRAGRPQYD G I+IT HS+LQFYLSLNNQQLPIESQ+
Sbjct 833 YSPEEGCWTELCPLSVQQMLGRAGRPQYDKEGKGIIITSHSKLQFYLSLNNQQLPIESQL 892
Query 181 I 181
+
Sbjct 893 V 893
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query 40 QSFSASREILQAEAEAVKTQD--LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLV 97
+S S + ++ E + T++ L L+ G H G + + ++DL+ I+VL+
Sbjct 1602 ESLSVAEQLTGECWERLSTRERALGTLVQAGVGYCHEGFSDAEIRYIQDLYQRGVIKVLI 1661
Query 98 STATLAWGVNLPAHTVIIKGTQVYLPEKGAWSELSP-MDILQMMG-------RAGRPQYD 149
TA+ W +++ A V+I V + + P D+ +M+ A RPQ
Sbjct 1662 CTASAIWTMSIYAPVVVIADITVSATNRPISQSMYPQTDLTRMLSCAYVSDDAAHRPQ-- 1719
Query 150 TGGHAILITQHSELQFYLSLNNQQLPIES 178
A+++ + S+ + L P+ES
Sbjct 1720 ----ALILYESSKRRQLYKLLEDAFPVES 1744
> hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase-like
Length=1700
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 150/181 (82%), Gaps = 0/181 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGKNQVL+FVHSRKE KTA+ I D L+KDTL FL+ SAS E+L+ EAE K +
Sbjct 278 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLE 337
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LKDLLPYGFA+HHAG+ R DR LVEDLF D+HIQVLVSTATLAWGVNLPAHTVIIKGTQV
Sbjct 338 LKDLLPYGFAIHHAGMTRVDRTLVEDLFGDKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 397
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y PEKG W+EL +DILQM+GRAGRPQYDT G ILIT H ELQ+YLSL NQQLPIESQM
Sbjct 398 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQM 457
Query 181 I 181
+
Sbjct 458 V 458
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query 5 KNQVLIFVHSRKEAVKTAKFI---CDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDL 61
K V++FV SRK+ TA I C A +Q+ RFL + + L E + L
Sbjct 1120 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQ---RFLH---CTEKDLIPYLEKLSDSTL 1173
Query 62 KDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVY 121
K+ L G H GL +R+LVE LF+ IQV+V++ +L WG+N+ AH VII T Y
Sbjct 1174 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTLYY 1233
Query 122 LPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ A+ + D+LQM+G A RP D G +++ Q S+ F+ + LP+ES +
Sbjct 1234 NGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHL 1292
> ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding /
ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/
nucleotide binding; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2171
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 148/179 (82%), Gaps = 0/179 (0%)
Query 3 AGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
AGK+QVLIFVHSRKE KTA+ I D A+ DTL RFL+ S +R++L + + VK DLK
Sbjct 740 AGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLK 799
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
D+LPYGFA+HHAGL R DR++VE LF+ H+QVLVSTATLAWGVNLPAHTVIIKGTQVY
Sbjct 800 DILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYN 859
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
PEKGAW ELSP+D++QM+GRAGRPQYD G I+IT +SELQ+YLSL N+QLPIESQ I
Sbjct 860 PEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLPIESQFI 918
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 4/178 (2%)
Query 4 GKNQVLIFVHSRKEAVKTA-KFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
K ++FV +RK TA + + + P FL E L E ++ + LK
Sbjct 1581 NKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLL---GKLEELDPFVEQIREETLK 1637
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
+ L +G H GL D+++V LF IQV V +++L WG L AH V++ GTQ Y
Sbjct 1638 ETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYD 1697
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ + S+ D+LQMMGRA RP D G ++ ++Y + P+ESQ+
Sbjct 1698 GRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPVESQL 1755
> ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, putative
Length=2172
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 146/179 (81%), Gaps = 0/179 (0%)
Query 3 AGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
AGK+QVLIFVHSRKE KTA+ I D A+ DTL RFL+ S SREIL+ A +K DLK
Sbjct 741 AGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLK 800
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
+LLPYGFA+HHAGL RTDR++VE+ F ++QVL+STATLAWGVNLPAHTVIIKGTQVY
Sbjct 801 ELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYN 860
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
PE+G W ELSP+D++QM+GRAGRPQYD G I+IT +S+LQ+YL L N+QLPIESQ I
Sbjct 861 PERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFI 919
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query 4 GKNQVLIFVHSRKEAVKTA-KFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
K ++FV +RK TA I + + P FL + E L+ + + LK
Sbjct 1582 NKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLL---GNLEELEPFLIQICEETLK 1638
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
+ L +G H GL D+++V LF IQV V +++L WG L AH V++ GT Y
Sbjct 1639 ETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYD 1698
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ + S+ ++LQMMGR RP D G ++ ++Y + LP+ES +
Sbjct 1699 GRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEALPVESHL 1756
> tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2249
Score = 249 bits (635), Expect = 5e-66, Method: Composition-based stats.
Identities = 113/178 (63%), Positives = 146/178 (82%), Gaps = 1/178 (0%)
Query 4 GKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKD 63
G+ QVL+FVHSRKE +T+K I D + +D L F++ ASREIL +E+E +K +LK+
Sbjct 743 GEKQVLVFVHSRKETYRTSKMILDKIVSEDKLELFIKDV-ASREILTSESEHIKNSNLKE 801
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
LLP+G +HHAGL R+DRKLVEDLF+D+H+Q+LVSTATL+WGVNLPA VIIKGTQ+Y+P
Sbjct 802 LLPFGIGIHHAGLVRSDRKLVEDLFSDKHLQLLVSTATLSWGVNLPAGVVIIKGTQIYVP 861
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
E+G+W EL P+ + QMMGRAGRPQ+DT G I+IT + +LQ+YLSLNNQQLPIESQ+I
Sbjct 862 EQGSWDELCPLSVQQMMGRAGRPQFDTFGKGIIITANEKLQYYLSLNNQQLPIESQLI 919
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query 73 HAGLPRTDRKLVEDLFA-DRHIQVLVSTATLAWGVNLPAHTVII 115
+ G + +LVE LFA D +VL+ T+ + W +N+ VI+
Sbjct 1740 YEGFSEDEVELVESLFAKDPRYRVLIVTSQVLWNLNIKCPYVIV 1783
> pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific protein,
putative; K01509 adenosinetriphosphatase [EC:3.6.1.3]
Length=2874
Score = 242 bits (618), Expect = 5e-64, Method: Composition-based stats.
Identities = 114/182 (62%), Positives = 139/182 (76%), Gaps = 0/182 (0%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQD 60
E AGKNQ+LIFVHSRKE +T+K + D ++ D L +FL S EIL +E E V ++
Sbjct 1035 EEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEILLSEKEHVINEE 1094
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
LK++LP+GF +HHAGL R DRKLVEDLF+DRHIQVLV T+TLAWG+NLPAHTVIIKGT V
Sbjct 1095 LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSV 1154
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
Y G + ELS MD+LQM+GR+GRPQYD G AI+IT H LQ YLSLNN+QL IES +
Sbjct 1155 YNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIESTL 1214
Query 181 IQ 182
+
Sbjct 1215 LH 1216
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 0/120 (0%)
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
L+ + G H + ++K+VE LF + IQ+L+ + + +N+ A+ VII T +
Sbjct 2299 LRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVIILDTII 2358
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ S +IL+M+ AGR DT + T ++ ++Y + + L +ES +
Sbjct 2359 THFHNNKEEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYEPLTVESNI 2418
> cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the second
part of the RNA
Length=1204
Score = 233 bits (593), Expect = 4e-61, Method: Composition-based stats.
Identities = 107/177 (60%), Positives = 138/177 (77%), Gaps = 1/177 (0%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQ-SFSASREILQAEAEAVKTQDLKDL 64
+Q+L+FVHSRK+ + TAK+I D A + L F + + SREI+ E +K+ +LK++
Sbjct 763 HQILVFVHSRKDTIHTAKYIRDTATENGMLNLFFSGNNNVSREIILDEVNNIKSNNLKEI 822
Query 65 LPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPE 124
LP G +HHAGL R+DRK+VEDLF+D HI+VLV+TATLAWGVNLPAHTVIIKGTQ+Y PE
Sbjct 823 LPCGIGIHHAGLVRSDRKVVEDLFSDGHIKVLVTTATLAWGVNLPAHTVIIKGTQIYQPE 882
Query 125 KGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
+G W+ELSP+D+LQM+GR GRPQYD GH ++IT L +YLSL NQQL IESQ+I
Sbjct 883 RGEWTELSPLDMLQMIGRGGRPQYDNNGHGVVITDFDHLTYYLSLLNQQLNIESQLI 939
> sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.-);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2163
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 131/176 (74%), Gaps = 0/176 (0%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL 65
NQ+++FVHSRKE +TA ++ + +++ + ++ + S++IL+ EA V L+ L+
Sbjct 738 NQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLI 797
Query 66 PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEK 125
G HHAGL R+DR L EDLFAD +QVLV TATLAWGVNLPAHTVIIKGT VY PEK
Sbjct 798 ESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEK 857
Query 126 GAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
G+W +LSP D+LQM+GRAGRP+YDT G I+IT S +Q+YLS+ NQQLPIESQ +
Sbjct 858 GSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFV 913
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 15/182 (8%)
Query 3 AGKNQVLIFVHSRKEAVKTA----KFICDAALQKDTLPRFLQSFSASREILQAEAEAVKT 58
+N +F+ SRK+ ++ A KF A++ D L + E + E +
Sbjct 1576 GNRNSSSVFLPSRKDCMEVASAFMKF--SKAIEWDML-------NVEEEQIVPYIEKLTD 1626
Query 59 QDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGT 118
L+ L +G + + G+ D ++V+ L+ + VL+ + + VII GT
Sbjct 1627 GHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEVIILGT 1685
Query 119 QVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIES 178
+Y + + + ++L+M+G A G +++T H+ +Y + LP ES
Sbjct 1686 NLYDGAEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMKAYYKKFLIEPLPTES 1744
Query 179 QM 180
+
Sbjct 1745 YL 1746
> ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6.1.-]
Length=2146
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 118/176 (67%), Gaps = 0/176 (0%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL 65
+Q +IFVHSRK+ KTA+ + D A Q +TL F ++++ + + +DL
Sbjct 746 HQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFF 805
Query 66 PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEK 125
GF +HHAG+ R+DR L E LF+D ++VLV TATLAWGVNLPAHTV+IKGTQ+Y +
Sbjct 806 EAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKA 865
Query 126 GAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
G W +L +D++Q+ GRAGRPQ+D G I+IT H +L +YL L QLPIESQ I
Sbjct 866 GGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFI 921
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 103/173 (59%), Gaps = 3/173 (1%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
VLIFV SR++ TA + A D PR Q S S E LQ + Q+L+ L +
Sbjct 1576 VLIFVSSRRQTRLTALDLIQFA-ASDEHPR--QFLSVSEEDLQMVLSQITDQNLRHTLQF 1632
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G +HHAGL DR VE+LF + IQVLVST+TLAWGVNLPAH VIIKGT+ + +
Sbjct 1633 GIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKR 1692
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ + +ILQMMGRAGRPQ+D G A+++ + FY + P+ES +
Sbjct 1693 YVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSL 1745
> hsa:10973 ASCC3, ASC1p200, DJ467N11.1, HELIC1, MGC26074, RNAH,
dJ121G13.4; activating signal cointegrator 1 complex subunit
3; K01529 [EC:3.6.1.-]
Length=2202
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 123/177 (69%), Gaps = 0/177 (0%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL 65
+QV++FVH+R V+TA + + A +P F + + + + + + + +++L
Sbjct 716 HQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELF 775
Query 66 PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEK 125
P GF++HHAG+ R DR LVE+LF++ HI+VLV TATLAWGVNLPAH VIIKGTQ+Y ++
Sbjct 776 PDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKR 835
Query 126 GAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMIQ 182
G++ +L +D++Q+ GRAGRPQ+D G I+IT H +L YL+L Q+ PIESQ ++
Sbjct 836 GSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLE 892
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query 8 VLIFVHSRKEAVKTA-KFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLP 66
VLIFV SR++ TA + I A ++D P+ Q + ++ V+ +LK L
Sbjct 1558 VLIFVSSRRQTRLTALELIAFLATEED--PK--QWLNMDEREMENIIATVRDSNLKLTLA 1613
Query 67 YGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKG 126
+G +HHAGL DRK VE+LF + +QVL++T+TLAWGVN PAH VIIKGT+ Y +
Sbjct 1614 FGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTR 1673
Query 127 AWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
+ + D+LQMMGRAGRPQ+D G A+++ + FY + P+ES ++
Sbjct 1674 RYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLL 1728
> mmu:77987 Ascc3, ASC1p200, B630009I04Rik, BC023451, D430001L07Rik,
D630041L21, Helic1, RNAH; activating signal cointegrator
1 complex subunit 3; K01529 [EC:3.6.1.-]
Length=2198
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 120/177 (67%), Gaps = 0/177 (0%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL 65
+QV++FVH+R V+TA + + A + FL + + + + + +++L
Sbjct 717 HQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELF 776
Query 66 PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEK 125
GF++HHAG+ R DR LVE+LF++ HI+VLV TATLAWGVNLPAH V+IKGTQ+Y ++
Sbjct 777 SDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKR 836
Query 126 GAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMIQ 182
G++ +L +D++Q+ GRAGRPQ+D G I+IT H +L YLSL QQ PIESQ ++
Sbjct 837 GSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLE 893
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query 8 VLIFVHSRKEAVKTA-KFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLP 66
VLIFV SR++ TA + I A ++D P+ Q + + + V+ +LK L
Sbjct 1559 VLIFVSSRRQTRLTALELIAFLATEED--PK--QWLNMDEQEMDNIIGTVRDSNLKLTLA 1614
Query 67 YGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKG 126
+G +HHAGL DRK VE+LF + +QVL++T+TLAWGVN PAH VIIKGT+ Y +
Sbjct 1615 FGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTR 1674
Query 127 AWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
+ + D+LQMMGRAGRPQ+D G A+++ + FY + P+ES ++
Sbjct 1675 RYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLL 1729
> tgo:TGME49_049810 activating signal cointegrator 1 complex subunit
3, putative (EC:5.99.1.3)
Length=2539
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 12/180 (6%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQ--SFSASREILQAEAEAVKTQDLKD 63
+Q L+FVHSR+E V TA+F+ AA + L F+ S+S +L ++A + +++
Sbjct 931 HQALVFVHSRRETVATAEFLVQAAQAQGHLGLFVSQAKASSSYALLASQAHKSRCREVAS 990
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
L G A+HHAGL R+DR L E LF TATLAWGVNLPA TVIIKGT VY
Sbjct 991 LFSNGVAIHHAGLLRSDRLLAEKLF---------RTATLAWGVNLPARTVIIKGTSVYDS 1041
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQ-HSELQFYLSLNNQQLPIESQMIQ 182
+ G + ++S +D+LQ+ GRAGRPQYDT G A+LIT+ H L Y+ LP+ES+ ++
Sbjct 1042 KSGGFRDISVLDVLQIFGRAGRPQYDTRGSAVLITEGHERLMRYVGQLTHSLPVESKFLE 1101
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 16/183 (8%)
Query 9 LIFVHSRKEAVKTAKFICD---------AALQKDTLPRFLQSFSASREILQAEAEAVKTQ 59
L+FV SR++ +TA+ + L D P FS + E+V+
Sbjct 1813 LVFVSSRRQTRRTAQELVSLLHTRHEHATDLFLDVRPEEADEFSQT-------VESVQDA 1865
Query 60 DLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ 119
L+ L +G A+HHAGL DR + LF ++VLV+TATLAWG+NLPA V++KGT+
Sbjct 1866 SLRTTLHHGVAIHHAGLSPHDRAVSARLFEKGFVRVLVATATLAWGMNLPARLVVVKGTE 1925
Query 120 VYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQ 179
Y E + + D+LQM+GRAGRPQ+D+ A++ + FY Q P+ES
Sbjct 1926 YYDAETNRYKDFPITDLLQMIGRAGRPQFDSQAVAVIFCHEPKKNFYKRFLYQPFPVESC 1985
Query 180 MIQ 182
++
Sbjct 1986 LLN 1988
> cel:Y54E2A.6 hypothetical protein; K01529 [EC:3.6.1.-]
Length=1798
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query 6 NQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL 65
+QVL+FVH+R K + C A + FL AS + +QA+ ++ +
Sbjct 334 HQVLVFVHTRNGTAKLGEAFCARASVLGQMDLFLPKDRASSKYIQADKAINICRNRAQIS 393
Query 66 PY---GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
P G +HHAGL R DR L+E FA+ H+ VL TATLAWGVNLPAH V+IKGT V+
Sbjct 394 PLFQRGMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFD 453
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
EKG +++L +D+ Q+ GRAGRPQ++ GH I+IT ++ YL++ Q PIESQ
Sbjct 454 AEKGVFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNPIESQF 511
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 3/177 (1%)
Query 5 KNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDL 64
+ VLIFV SR++ TA + + ++L E L A A+K ++LK
Sbjct 1192 RKPVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMA---AIKDENLKLT 1248
Query 65 LPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPE 124
LP+G +HHAGL +R +VE LF ++ IQVL++TATLAWG+N PAH VI+KGT+ + +
Sbjct 1249 LPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGK 1308
Query 125 KGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
KG + + D+LQMMGRAGRPQ+D A++ Q ++ FY + P+ES ++
Sbjct 1309 KGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLL 1365
> bbo:BBOV_I001530 19.m02171; helicase
Length=1798
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 8/177 (4%)
Query 7 QVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQ---AEAEAVKTQDLKD 63
Q +IFVHSR E TA + + + P + F +R+I Q + + K +++
Sbjct 407 QCIIFVHSRNETSMTANKLIEMIQES---PSHQKLFQPNRDIYQRFHKQLKKSKHDNVER 463
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
Y ++HHAG+ R DR +VE++F + I+VLVST+TLAWGVNLPA+ VIIKGT ++
Sbjct 464 FAEYCMSIHHAGMVRRDRDVVENMFKEGLIKVLVSTSTLAWGVNLPANCVIIKGT--FIG 521
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
G ++ +++ Q+MGRAGRPQ+DT G +LIT+H L Y+ + +QLPIES +
Sbjct 522 GLGVDRNINYLELTQIMGRAGRPQFDTSGTGVLITEHKNLNDYIKMQTEQLPIESHL 578
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 10/173 (5%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
VL+FV SR++ TA+ LQ S + A ++L + +
Sbjct 1274 VLVFVSSRRQTRTTAR----------DFVSLLQVKSLRWTNIDISARPFIDENLNVFVEH 1323
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G +HHAGL +DR +E+++ I+VL++TATLAWGVNLPA VI+KGT+ Y +
Sbjct 1324 GIGIHHAGLHDSDRIRIEEMYLKGEIKVLIATATLAWGVNLPAKIVIVKGTEYYDGKTKK 1383
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+++ S DILQM+GRAGR +D +A + T+ ++ FY + P ES
Sbjct 1384 YADYSVTDILQMVGRAGRRVFDKEAYAYVYTESRKVDFYKAFMFSPFPAESSF 1436
> pfa:PF14_0370 DEAD/DEAH box helicase, putative; K01509 adenosinetriphosphatase
[EC:3.6.1.3]
Length=2472
Score = 142 bits (357), Expect = 8e-34, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query 7 QVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLP 66
Q +IFV SR E KT +F+ + AL+ + + F+ + +I + ++ +K
Sbjct 695 QCIIFVCSRNETNKTIEFLINHALKNNEIEYFVNNVYTDNDIKKKIKKS-NNLYIKQFYE 753
Query 67 YGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKG 126
YG +HHAG+ R+D+ LVE LF + VL T+TLAWGVNLP HTVIIKGT + E G
Sbjct 754 YGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESG 813
Query 127 AWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMIQ 182
++ +DI Q+ GR GRPQY++ GHAILIT+ ++L Y+ L IES ++
Sbjct 814 KLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIESNFLK 869
Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 0/135 (0%)
Query 48 ILQAEAEAVKTQDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVN 107
+ Q ++ + LK++L YG +HHAGL D+ +VE LF ++ IQ+L+ T+TLAWG+N
Sbjct 1794 LFQNYLNLIENEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGIN 1853
Query 108 LPAHTVIIKGTQVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYL 167
LPA+ VIIKG + Y + + ++ D+LQM+GRAGRPQ+D AIL+ Q
Sbjct 1854 LPAYLVIIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIK 1913
Query 168 SLNNQQLPIESQMIQ 182
+ + IES +++
Sbjct 1914 NFLYHPMNIESNIME 1928
> tpv:TP01_0582 RNA helicase
Length=1764
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 6/178 (3%)
Query 3 AGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
+GK Q ++FVHSR E TA I + + + F + ++ + ++ ++ +LK
Sbjct 363 SGK-QCMVFVHSRNETFTTASRIVEMINRSEKSDLFQPDLA---QVKRFSSQLMRRNNLK 418
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
L Y ++HHAGL ++DR LVE++F ++VLV T+TLAWGVNLPAH+VIIKGT ++
Sbjct 419 LLSDYSISIHHAGLSKSDRDLVEEMFKSGLVKVLVCTSTLAWGVNLPAHSVIIKGT--FI 476
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
G ++ +++ Q+MGRAGRPQ+D G IL+T H L Y+ + +++PIESQ+
Sbjct 477 GGVGVDRNINNLELNQIMGRAGRPQFDVEGKGILLTDHKNLYSYVRMQTERVPIESQL 534
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
Query 7 QVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLP 66
VLIFV SR++ TA+ + L + SFS + + + E + T +P
Sbjct 1222 NVLIFVSSRRQTRMTAQDLVGL------LQFYNISFSNTNDTYFFDDEWLNT-----FVP 1270
Query 67 YGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKG 126
G +HHAGL DR+LV+DLF + ++VL++T+TLAWGVNLPA VIIKGT+ Y
Sbjct 1271 NGIGIHHAGLSTKDRELVQDLFLNGKLKVLIATSTLAWGVNLPAKIVIIKGTEFYDGRVK 1330
Query 127 AWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMIQ 182
+ + S DI+QM+GRAGR YD +A + T+ ++ FY + P ES ++
Sbjct 1331 RYIDYSATDIIQMVGRAGRNIYDGEAYAYVFTETRKVGFYKAFMFTPFPTESFFLE 1386
> sce:YGR271W SLH1; Putative RNA helicase related to Ski2p, involved
in translation inhibition of non-poly(A) mRNAs; required
for repressing propagation of dsRNA viruses (EC:3.6.1.-);
K01529 [EC:3.6.1.-]
Length=1967
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query 9 LIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPYG 68
LIFV SR++ TA + +D RFL E LQ V LK L +G
Sbjct 1373 LIFVASRRQTRLTALDLIHLCGMEDNPRRFLNI--DDEEELQYYLSQVTDDTLKLSLQFG 1430
Query 69 FAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGAW 128
+HHAGL + DR + LF IQ+L++T+TLAWGVNLPAH VIIKGTQ + + +
Sbjct 1431 IGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGY 1490
Query 129 SELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
++ DILQMMGRAGRP YDT G AI+ T+ S+ FY N P+ES +
Sbjct 1491 RDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSL 1542
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 10/179 (5%)
Query 7 QVLIFVHSRKEAVKTAKFICDAALQKDTLPRF----LQSFSASREILQAEAEAVKTQDLK 62
QV++FVHSRKE VK+A+ A + F ++ SR +++ + +D+K
Sbjct 534 QVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKN-----RDKDMK 588
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
++ +GF +HHAG+ R+DR L E +F D I+VL TATLAWGVNLPA VIIKGTQVY
Sbjct 589 EIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYD 648
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDT-GGHAILITQHSELQFYLSLNNQQLPIESQM 180
+KG + +L D++Q+ GR GRP + + G IL T + L Y+SL QQ PIES+
Sbjct 649 SKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRF 707
> cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helicase,
Pre-mRNA splicing helicase BRR2 2 (RNA helicase plus Sec63
domain)
Length=2184
Score = 135 bits (339), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/218 (37%), Positives = 114/218 (52%), Gaps = 38/218 (17%)
Query 1 ECAGKN-QVLIFVHSRKEAVKTAKFI------------------CDAALQK--DTLPRFL 39
+C KN Q L+FVHSR E + TA + C Q+ ++ +
Sbjct 532 DCLEKNEQALVFVHSRNETLSTALYFKRMLNIHSIKSSFNRGTSCSDNNQEFDGSIKNLI 591
Query 40 QSFSASREILQAEAEAVKTQD-----------------LKDLLPYGFAVHHAGLPRTDRK 82
+ + E V ++ +KDL +G +HHAGL + RK
Sbjct 592 KKKTIGNHFSTDEMNKVNKKEFSGNYLLKALRDCDNSSIKDLFNFGLGIHHAGLISSQRK 651
Query 83 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGAWSELSPMDILQMMGR 142
L E LF+ I+VL++TATLAWGVNLPA VIIKGT VY +KG++ +L +DILQ+ GR
Sbjct 652 LSEALFSQGLIRVLITTATLAWGVNLPARHVIIKGTNVYDSKKGSFKDLGILDILQIFGR 711
Query 143 AGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
AGRPQ++ G A +IT ++Q Y+ Q PIESQ+
Sbjct 712 AGRPQFEKLGSAYMITSSDKVQSYVKKLTFQAPIESQL 749
Score = 129 bits (324), Expect = 6e-30, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query 5 KNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQ-----SFSASREILQAEAEAVKTQ 59
K V+IFV SR++ TA + + RF+ SF S L K +
Sbjct 1503 KKPVIIFVASRRQTRITAMSLSHMCYCEGQPNRFINTEQKDSFGLS---LAGSIRMAKDK 1559
Query 60 DLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ 119
LK L G +HHAGL +DR LVE+LF + IQ++V+T+TLAWGVN PAH IIKGT+
Sbjct 1560 SLKQTLESGIGIHHAGLSESDRNLVENLFLNGMIQIVVATSTLAWGVNFPAHFAIIKGTE 1619
Query 120 VYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIES 178
+ + G + + D+LQM+GR+GRPQYD+ A ++T ++ FY LP+ES
Sbjct 1620 YFDAKLGQYIDYPITDVLQMVGRSGRPQYDSHSVACIMTLEAKKPFYKRFLYDSLPLES 1678
> mmu:330149 Hfm1, A330009G12Rik, Gm1046, Sec63d1; HFM1, ATP-dependent
DNA helicase homolog (S. cerevisiae)
Length=1434
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 10/173 (5%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
L+F +RK + A + L KD +F+ S LQ A +++ LKD L Y
Sbjct 528 TLVFCSTRKGVQQAA-----SVLVKDA--KFIISVEQKLR-LQKSAYSIRDSKLKDTLVY 579
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G HHAG+ +DRKLVE LF + VL +T+TLA G+N+PAH V+IK T Y G
Sbjct 580 GVGYHHAGMELSDRKLVEGLFTSGDLPVLFTTSTLAMGMNMPAHLVVIKSTMHY--SGGV 637
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ E S DILQM+GRAGRPQ+DT A+++T+ S + Y+ + +ES +
Sbjct 638 FEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTREKYVQMLACNDTVESSL 690
> ath:AT3G27730 RCK; RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent
helicase/ DNA helicase
Length=1133
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 97/176 (55%), Gaps = 7/176 (3%)
Query 9 LIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY- 67
L+F +RK A + A+ + A+ + F SRE L+ EA K + Y
Sbjct 278 LVFCSTRKGAQEAAQKLAQTAMTYG----YSNPFIKSREQLERLREASPMCSDKQMQSYI 333
Query 68 --GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEK 125
G H+ GL + DR LVE LF + IQV+ +T TLA G+NLPAHTV+IK TQ + EK
Sbjct 334 LQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEK 393
Query 126 GAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQMI 181
G + E +LQM GRAGRP +D G I++T+ + Y +L N +ESQ++
Sbjct 394 GHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLL 449
> hsa:164045 HFM1, FLJ36760, FLJ39011, MER3, MGC163397, RP11-539G11.1,
SEC63D1, Si-11, Si-11-6, helicase; HFM1, ATP-dependent
DNA helicase homolog (S. cerevisiae) (EC:3.6.4.12)
Length=1435
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
L+F +RK + A + L KD +F+ + ++ LQ A +V+ L+D+L
Sbjct 530 TLVFCATRKGVQQAA-----SVLVKDA--KFIMTVE-QKQRLQKYAYSVRDSKLRDILKD 581
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G A HHAG+ +DRK+VE F + VL +T+TLA GVNLPAH V+IK T Y G
Sbjct 582 GAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGL 639
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
+ E S DILQM+GRAGRPQ+DT A+++T+ S Y+ + + +ES +
Sbjct 640 FEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSL 692
> dre:557052 hfm1, si:ch211-83f14.5; HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)
Length=1228
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 10/152 (6%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
L+F +RK ++A + L KD RF+ S + +++ A ++ L+DL Y
Sbjct 436 TLVFCSTRKGVQQSA-----SVLAKDA--RFIMSIDHKQRLVKY-ANSLLDAKLRDLFVY 487
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G HHAG+ +DRK+ E+ F + VL +T+TLA GVN+PAH V+IK T Y+ GA
Sbjct 488 GIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHYV--GGA 545
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQ 159
E S D+LQM+GRAGRPQ+DT A+++T+
Sbjct 546 CEEYSEADLLQMIGRAGRPQFDTTATAVIMTR 577
> sce:YGL251C HFM1, MER3; Hfm1p (EC:3.6.1.-); K01529 [EC:3.6.1.-]
Length=1187
Score = 102 bits (254), Expect = 7e-22, Method: Composition-based stats.
Identities = 66/178 (37%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query 3 AGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
A VLIF +R + TAKF+ + + FS S++ + L
Sbjct 369 ADNRPVLIFCPTRASTISTAKFLLNNHI-----------FSKSKKRCNHNPS---DKILN 414
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
+ + G A HHAG+ DR VE F I +L ST+TLA GVNLPA+ VIIKGT+ +
Sbjct 415 ECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSW- 473
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 180
E S +D+LQM+GRAGRPQ++T G A+++T Q Y +L + +ES +
Sbjct 474 -NSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDVLESSL 530
> ath:AT4G32700 DNA-directed DNA polymerase family protein; K02349
DNA polymerase theta subunit [EC:2.7.7.7]
Length=2154
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query 6 NQVLIFVHSRKEAVKTA----KFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDL 61
N VLIF SRK TA K I + + D ++ + L+ V L
Sbjct 770 NSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPV-L 828
Query 62 KDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVY 121
++ LP G A HHAGL +R++VE + ++VL +T+TLA GVNLPA VI + +
Sbjct 829 EETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPMI- 887
Query 122 LPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLP 175
+ QM GRAGR DT G ++LI + EL+ ++L N+ P
Sbjct 888 -----GRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCP 936
> mmu:191578 Helq, AU021725, D430018E21Rik, Hel308, MGC105224;
helicase, POLQ-like (EC:3.6.4.12)
Length=1069
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
L+F S+K A+ +C L KD L + + L+ LK +P+
Sbjct 539 CLVFCPSKKNCENVAEMLCKF-LSKDYLNHREKEKCEVIKSLRNIGNGKVCPVLKRTVPF 597
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G A HH+GL +RKL+E+ ++ + +L T+TLA GVNLPA VI++ V A
Sbjct 598 GIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYV------A 651
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSL 169
+ L QM+GRAGR DT G +IL+ Q + Q L L
Sbjct 652 NTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLEL 693
> dre:100330111 mutagen-sensitive 308-like
Length=1010
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL-- 65
LIF ++K A IC L K+ F++ A + IL E ++ L +L
Sbjct 501 CLIFCATKKNCENLAGMIC-KYLNKE----FIKHKEAEKAILLGELKSSGNGSLCPVLQK 555
Query 66 --PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
P+G A HH+GL +RKLVE+ ++ + +L T+TLA G+NLPA VI++ V
Sbjct 556 TIPFGLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRSPYV--- 612
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQ 164
A L QM+GRAGR D G +ILI Q ++
Sbjct 613 ---AADFLKRSQYKQMVGRAGRAGIDAMGESILILQDKDIN 650
> dre:562952 helq, hel308, si:ch211-85e10.2; helicase, POLQ-like
Length=1010
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLL-- 65
LIF ++K A IC L K+ F++ A + IL E ++ L +L
Sbjct 501 CLIFCATKKNCENLAGMIC-KYLNKE----FIKHKEAEKAILLGELKSSGNGSLCPVLQK 555
Query 66 --PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
P+G A HH+GL +RKLVE+ ++ + +L T+TLA G+NLPA VI++ V
Sbjct 556 TIPFGLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRSPYV--- 612
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQ 164
A L QM+GRAGR D G +ILI Q ++
Sbjct 613 ---AADFLKRSQYKQMVGRAGRAGIDAMGESILILQDKDIN 650
> hsa:10721 POLQ, DKFZp781A0112, POLH, PRO0327; polymerase (DNA
directed), theta (EC:2.7.7.7); K02349 DNA polymerase theta
subunit [EC:2.7.7.7]
Length=2590
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 12/105 (11%)
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
L+ +P+G A HHAGL +R ++E F I+VL +T+TL+ GVNLPA VII+
Sbjct 405 LQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIR---- 460
Query 121 YLPEKGAWSELSPMDIL---QMMGRAGRPQYDTGGHAILITQHSE 162
P G P+DIL QM+GRAGR DT G +ILI ++SE
Sbjct 461 -TPIFGG----RPLDILTYKQMVGRAGRKGVDTVGESILICKNSE 500
> hsa:113510 HELQ, HEL308, MGC20604; helicase, POLQ-like (EC:3.6.4.12)
Length=1101
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLPY 67
L+F S+K A+ IC L K+ L + + L+ LK +P+
Sbjct 580 CLVFCPSKKNCENVAEMIC-KFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPF 638
Query 68 GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGA 127
G A HH+GL +RKL+E+ ++ + + T+TLA GVNLPA VI++ V A
Sbjct 639 GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------A 692
Query 128 WSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSL 169
L QM+GRAGR DT G +ILI Q + Q L L
Sbjct 693 KEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLEL 734
> cel:Y55B1AL.3 hel-308; HELicase family member (hel-308)
Length=923
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query 5 KNQVLIFVHSRKEAVKTAKFICDAALQKDTLPR------------FLQSFSASREILQAE 52
KN +IF ++K A I TLP FLQS+ + + + +
Sbjct 403 KNSAVIFCPNKKNCENVAVLIAK------TLPAHIRQAKRAESDAFLQSYLSDNDDERMD 456
Query 53 AEAVKTQDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHT 112
A LK + G A HH+GL + +RK VE F + I V+ +T+TLA GVNLP
Sbjct 457 AV------LKQCILSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRR 510
Query 113 VIIKGTQVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSE 162
VIIK V L LQM GRAGR +DT G I I + E
Sbjct 511 VIIKAPMV------GRERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGE 554
> cel:F01G4.3 hypothetical protein; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1266
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSAS--REILQAEAEAVKT 58
+C+ + +++FV SRK + A+ + L + + ++ F + + + ++ E +
Sbjct 558 KCSDQLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQV 617
Query 59 QDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGT 118
++DL GFAVHH+G+ +++VE LF ++++L +T T A GVN+PA V+
Sbjct 618 LTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSI 677
Query 119 QVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHS 161
+ + L+P + QM GRAGR D G I+I + S
Sbjct 678 MKH--DGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDS 718
> dre:566079 bZ1P14.5; si:rp71-1p14.5; K02349 DNA polymerase theta
subunit [EC:2.7.7.7]
Length=2452
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 13/126 (10%)
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
L+ +P+G A HHAGL +R ++E F +I+VL +T+TL+ GVNLPA VII+ T V
Sbjct 552 LQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIR-TPV 610
Query 121 YLPEKGAWSELSPMDIL---QMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQL-PI 176
+ G +DIL QM+GRAGR DT G ++L+ + +E +SL L PI
Sbjct 611 F---NGHL-----LDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMSLIQGSLKPI 662
Query 177 ESQMIQ 182
S +++
Sbjct 663 SSCLVK 668
> cel:W03A3.2 polq-1; POLQ (DNA polymerase theta) homolog family
member (polq-1); K02349 DNA polymerase theta subunit [EC:2.7.7.7]
Length=1661
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query 52 EAEAVKTQDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAH 111
E K +++ L +G A HHAGL +R+ +E F +++I +LV+T+TLA GVNLPA
Sbjct 306 ERNGCKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAE 365
Query 112 TVIIKGTQVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSE 162
V+IK +G S L+ ++ QM+GRAGR + T G L+ + +
Sbjct 366 RVLIKAQP-----RGP-SALTSLNYRQMVGRAGRTGHATRGETYLLIKKCD 410
> sce:YLR398C SKI2; Ski complex component and putative RNA helicase,
mediates 3'-5' RNA degradation by the cytoplasmic exosome;
null mutants have superkiller phenotype of increased viral
dsRNAs and are synthetic lethal with mutations in 5'-3'
mRNA decay (EC:3.6.1.-); K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1287
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query 8 VLIFVHSRKEAVKTAKFI-----CDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLK 62
+++FV S+K + A ++ C+ +K + F++ S +R + + + + + +
Sbjct 629 MVVFVFSKKRCEEYADWLEGINFCNNK-EKSQIHMFIEK-SITR-LKKEDRDLPQILKTR 685
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
LL G AVHH GL ++L+E LF+ I+VL +T T A G+NLP TVI + +
Sbjct 686 SLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKH- 744
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSEL 163
+ EL+P + QM GRAGR D+ G I++ +S L
Sbjct 745 -DGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
> ath:AT1G59760 ATP-dependent RNA helicase, putative; K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=988
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Query 8 VLIFVHSRKE----AVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAV-KTQDLK 62
V++F S+KE A++ +K + ++ +KD + F+++ ++L + + + + ++
Sbjct 323 VILFSFSKKECEALAMQMSKMVLNSDDEKDAVETI---FASAIDMLSDDDKKLPQVSNIL 379
Query 63 DLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYL 122
+L G VHH+GL ++++E LF + I+ L +T T + G+N+PA TV+ + +
Sbjct 380 PILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD 439
Query 123 PEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQH 160
+K W LS + +QM GRAGR D G IL+
Sbjct 440 GDKFRW--LSSGEYIQMSGRAGRRGIDKRGICILMVDE 475
> tpv:TP04_0364 hypothetical protein; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1069
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query 1 ECAGKNQVLIFVHSRKEAVKTAKFICDAAL-----QKDTLPRFLQSFSASREILQAEAEA 55
E K V++F SR++ + AK + + L Q + FL +E L +E+
Sbjct 419 ESEDKMPVVLFCFSRQKCEQYAKDMPNLNLVYNKVQASKIHLFL------KESLDGLSES 472
Query 56 VKT----QDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAH 111
+ + + +LL G VHH+GL +++VE LF+ I+VL +T T A GVN+PA
Sbjct 473 DRNLPQLRKMVNLLTRGIGVHHSGLLPIIKEMVEILFSRGLIKVLFATETFAMGVNMPAR 532
Query 112 TVIIKGTQVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILI 157
+V+ T +Y + + L+ + QM GRAGR DT G+ +
Sbjct 533 SVVF--TSIYKHDGITYRYLTSSEYTQMAGRAGRRGLDTFGNVYIF 576
> dre:559653 skiv2l, fb70b07, wu:fb70b07; superkiller viralicidic
activity 2 (S. cerevisiae homolog)-like; K12599 antiviral
helicase SKI2 [EC:3.6.4.-]
Length=1230
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query 8 VLIFVHSRKEAVKTAKFICD----AALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKD 63
V+ F SR + A+ + +++K + FLQ S +R + + + + ++D
Sbjct 564 VVAFTFSRTRCDENARSLTSLDLTTSIEKSEIHSFLQK-SLTR-LRGGDRQLPQILLMRD 621
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
LL G VHH+G+ ++++E LF+ ++VL +T T A GVN+PA TV+ + +
Sbjct 622 LLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKH-- 679
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQ 159
+ + L P + +QM GRAGR D G I++ +
Sbjct 680 DGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCK 715
> cel:W08D2.7 mtr-4; yeast MTR (mRNA TRansport) homolog family
member (mtr-4); K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1026
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query 7 QVLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDLKDLLP 66
++F SRKE A + D KD ++S S I Q E K + ++LP
Sbjct 375 NCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYES-AIAQLSPEDQKLPQILNILP 433
Query 67 Y---GFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
G VHH+GL ++ +E LF + ++VL +T T + G+N+PA TV+ + +
Sbjct 434 LLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDG 493
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHS 161
+ ++ + +QM GRAGR D G IL+ +
Sbjct 494 SDNRY--ITSGEYIQMAGRAGRRGKDDRGTVILMVDSA 529
> cel:C28H8.3 hypothetical protein; K01529 [EC:3.6.1.-]
Length=1714
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query 58 TQDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKG 117
TQ L L G HHAGL +R VE LF ++ VL ST+TL+ GVN+P TV+
Sbjct 1271 TQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMFGV 1330
Query 118 TQVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILIT 158
+ +L+P+ QM GRAGR +D G+ I ++
Sbjct 1331 DTL---------QLTPLLYRQMSGRAGRRGFDHSGNVIFMS 1362
> hsa:6499 SKIV2L, 170A, DDX13, HLP, SKI2, SKI2W, SKIV2; superkiller
viralicidic activity 2-like (S. cerevisiae); K12599 antiviral
helicase SKI2 [EC:3.6.4.-]
Length=1246
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query 8 VLIFVHSRKEAVKTAKFICDAAL----QKDTLPRFLQSFSASREILQAEAEAVKTQDLKD 63
V++F SR + A + L +K + FLQ A + ++ + + + +
Sbjct 569 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLA--RLRGSDRQLPQVLHMSE 626
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
LL G VHH+G+ +++VE LF+ ++VL +T T A GVN+PA TV+ + +
Sbjct 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 684
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQ 159
+ + +L P + +QM GRAGR D G IL+ +
Sbjct 685 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK 720
> ath:AT1G70070 EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent
helicase/ RNA helicase
Length=1171
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 35/170 (20%)
Query 4 GKNQV--LIFVHSRKEAVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAE------- 54
GKN + + F+ +R+ CDAA+Q ++++F + ++E E
Sbjct 434 GKNMLPAIWFIFNRRG--------CDAAVQ------YVENFQLLDDCEKSEVELALKKFR 479
Query 55 -----AVKTQDLKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLP 109
AV+ K LL G A HHAG + +E+LF ++V+ +T TLA G+N+P
Sbjct 480 VLYPDAVRESAEKGLL-RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMP 538
Query 110 AHTVIIKGTQVYLPEKGAWS--ELSPMDILQMMGRAGRPQYDTGGHAILI 157
A T +I L +K EL P ++ QM GRAGR D G+ +L+
Sbjct 539 ARTAVISS----LSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLV 584
> mmu:108077 Skiv2l, 4930534J06Rik, AW214248, Ddx13, SKI, Ski2w;
superkiller viralicidic activity 2-like (S. cerevisiae);
K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1244
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query 8 VLIFVHSRKEAVKTAKFICDAAL----QKDTLPRFLQSFSASREILQAEAEAVKTQDLKD 63
V++F SR + A + L +K + FLQ A + ++ + + + +
Sbjct 566 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLA--RLRGSDRQLPQVLHMSE 623
Query 64 LLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLP 123
LL G VHH+G+ +++VE LF+ ++VL +T T A GVN+PA TV+ + +
Sbjct 624 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 681
Query 124 EKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQ 159
+ + +L P + +QM GRAGR D G IL+ +
Sbjct 682 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK 717
> ath:AT3G46960 ATP binding / ATP-dependent helicase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1347
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query 61 LKDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 120
L+ LL G VHHAGL +++VE LF I+VL ST T A GVN PA TV+ +
Sbjct 707 LQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRK 766
Query 121 YLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQ 159
+ + + +L P + QM GRAGR D G +++ +
Sbjct 767 F--DGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCR 803
> sce:YJL050W MTR4, DOB1; ATP-dependent 3'-5' RNA helicase, involved
in nuclear RNA processing and degredation both as a component
of the TRAMP complex and in TRAMP independent processes;
member of the Dead-box family of helicases (EC:3.6.1.-);
K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1073
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query 6 NQVLIFVHSRKE----AVKTAKFICDAALQKDTLPRFLQSFSASREILQAEAEAVKTQDL 61
N V++F S+++ A+K +K ++ +K+ L + + A + + + E + + +
Sbjct 407 NPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIAL--LPETDRELPQIKHI 464
Query 62 KDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVY 121
LL G +HH+GL ++++E LF + ++VL +T T + G+N+PA TV+ + +
Sbjct 465 LPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW 524
Query 122 LPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILI 157
++ W +S + +QM GRAGR D G I++
Sbjct 525 DGQQFRW--VSGGEYIQMSGRAGRRGLDDRGIVIMM 558
> mmu:72198 Skiv2l2, 2610528A15Rik, mKIAA0052; superkiller viralicidic
activity 2-like 2 (S. cerevisiae) (EC:3.6.4.13); K12598
ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1040
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query 8 VLIFVHSRKEAVKTAKFICDAALQKDTLPRFLQS-FSASREILQAEAEAV-KTQDLKDLL 65
V+IF S+K+ A + D + ++ F+ + + L E + + + + + LL
Sbjct 387 VIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLL 446
Query 66 PYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEK 125
G +HH GL ++ +E LF++ I+ L +T T A G+N+PA TV+ + Y +
Sbjct 447 KRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKD 506
Query 126 GAWSELSPMDILQMMGRAGRPQYDTGGHAILIT 158
W +S + +QM GRAGR D G IL+
Sbjct 507 FRW--ISSGEYIQMSGRAGRRGMDDRGIVILMV 537
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 4912245712
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40