bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_6659_orf1
Length=95
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_010690 40s ribosomal protein S6, putative ; K02991 ... 121 4e-28
bbo:BBOV_III004660 17.m07417; 40S ribosomal protein S6; K02991... 112 2e-25
cpv:cgd2_4260 40S ribosomal protein S6 ; K02991 small subunit ... 110 1e-24
tpv:TP02_0487 40S ribosomal protein S6; K02991 small subunit r... 100 2e-21
xla:379863 rps6-b, MGC53553, rps6b; ribosomal protein S6; K029... 96.7 2e-20
dre:445028 rps6, wu:fa92e06, wu:fb64g06; zgc:92237; K02991 sma... 96.7 2e-20
xla:380281 rps6-a, MGC64259, rps6, rps6a; ribosomal protein S6... 96.7 2e-20
mmu:20104 Rps6, MGC102571, MGC103209; ribosomal protein S6; K0... 96.7 2e-20
mmu:667739 Gm13654, OTTMUSG00000013244; predicted gene 13654 96.7
hsa:6194 RPS6; ribosomal protein S6; K02991 small subunit ribo... 96.7 2e-20
pfa:PF13_0228 40S ribosomal protein S6, putative; K02991 small... 90.5 1e-18
ath:AT5G10360 EMB3010 (embryo defective 3010); structural cons... 89.7 2e-18
sce:YPL090C RPS6A; Rps6ap; K02991 small subunit ribosomal prot... 89.4 3e-18
sce:YBR181C RPS6B, LPG18, RPS101, RPS102; Protein component of... 89.4 3e-18
ath:AT4G31700 RPS6; RPS6 (RIBOSOMAL PROTEIN S6); structural co... 88.6 4e-18
cel:Y71A12B.1 rps-6; Ribosomal Protein, Small subunit family m... 82.8 2e-16
mmu:639593 40S ribosomal protein S6-like 80.1 2e-15
tgo:TGME49_058030 DNA polymerase delta catalytic subunit, puta... 30.0 1.7
dre:402921 bcor; BCL6 co-repressor 28.5 5.0
> tgo:TGME49_010690 40s ribosomal protein S6, putative ; K02991
small subunit ribosomal protein S6e
Length=256
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%), Gaps = 0/73 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L NHRVRLLFR GMKC+R RRTGE+KRKSVRG+I GPDL+VLNLV+++KGP IPGLT
Sbjct 68 LVNHRVRLLFRKGMKCYRQRRTGEKKRKSVRGSIVGPDLAVLNLVLVKKGPETIPGLTDA 127
Query 83 EKPRRLGPKRANH 95
E+PRRLGPKRAN+
Sbjct 128 ERPRRLGPKRANN 140
> bbo:BBOV_III004660 17.m07417; 40S ribosomal protein S6; K02991
small subunit ribosomal protein S6e
Length=230
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 0/73 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L RVRLL R GMKC+RPRRTGE +RKSVRG I PDLS+LNLV++++GP DIPGLT G
Sbjct 68 LTTSRVRLLLRKGMKCYRPRRTGEMRRKSVRGCIASPDLSILNLVVVKRGPQDIPGLTDG 127
Query 83 EKPRRLGPKRANH 95
E+PRRLGPKRA+
Sbjct 128 ERPRRLGPKRASK 140
> cpv:cgd2_4260 40S ribosomal protein S6 ; K02991 small subunit
ribosomal protein S6e
Length=225
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 62/72 (86%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L ++RVRLLFR GMKC+RPRRTGE KRKSVRG I DLSVL+LV++++G DIPGLT G
Sbjct 72 LTSNRVRLLFRKGMKCYRPRRTGEMKRKSVRGCIVSHDLSVLSLVVVERGEQDIPGLTDG 131
Query 83 EKPRRLGPKRAN 94
EKPRRLGPKRA+
Sbjct 132 EKPRRLGPKRAS 143
> tpv:TP02_0487 40S ribosomal protein S6; K02991 small subunit
ribosomal protein S6e
Length=218
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L RVRLLF+ GMKC+RPRR GE KRKSVRG + LS+LNLV+++KGP ++PGLT
Sbjct 68 LTPTRVRLLFKKGMKCYRPRRKGEMKRKSVRGCVVSSQLSILNLVLVKKGPQEVPGLTDQ 127
Query 83 EKPRRLGPKRAN 94
E PRRLGPKRA+
Sbjct 128 EAPRRLGPKRAS 139
> xla:379863 rps6-b, MGC53553, rps6b; ribosomal protein S6; K02991
small subunit ribosomal protein S6e
Length=249
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+RPRRTGERKRKSVRG I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDN 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> dre:445028 rps6, wu:fa92e06, wu:fb64g06; zgc:92237; K02991 small
subunit ribosomal protein S6e
Length=249
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+RPRRTGERKRKSVRG I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDS 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> xla:380281 rps6-a, MGC64259, rps6, rps6a; ribosomal protein
S6; K02991 small subunit ribosomal protein S6e
Length=249
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+RPRRTGERKRKSVRG I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDN 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> mmu:20104 Rps6, MGC102571, MGC103209; ribosomal protein S6;
K02991 small subunit ribosomal protein S6e
Length=249
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+RPRRTGERKRKSVRG I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDT 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> mmu:667739 Gm13654, OTTMUSG00000013244; predicted gene 13654
Length=249
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+RPRRTGERKRKSVRG I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDT 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> hsa:6194 RPS6; ribosomal protein S6; K02991 small subunit ribosomal
protein S6e
Length=249
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+RPRRTGERKRKSVRG I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDT 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> pfa:PF13_0228 40S ribosomal protein S6, putative; K02991 small
subunit ribosomal protein S6e
Length=306
Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L N+RVRLLF+ GMKC+RPR+ GERKRKSVRG I G DLS LNL +++KG +IPGLT
Sbjct 68 LTNNRVRLLFKKGMKCYRPRKKGERKRKSVRGCIVGQDLSALNLTLVKKGVNEIPGLTDK 127
Query 83 EKPRRLGPKRAN 94
++LGPKRA+
Sbjct 128 AVGKKLGPKRAS 139
> ath:AT5G10360 EMB3010 (embryo defective 3010); structural constituent
of ribosome; K02991 small subunit ribosomal protein
S6e
Length=249
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query 27 RVRLLFRTGMKCFRP--RRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGGEK 84
RVRLL G CFR RRTGER+RKSVRG I PDLSVLNLV+++KG +D+PGLT EK
Sbjct 72 RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEK 131
Query 85 PRRLGPKRAN 94
PR GPKRA+
Sbjct 132 PRMRGPKRAS 141
> sce:YPL090C RPS6A; Rps6ap; K02991 small subunit ribosomal protein
S6e
Length=236
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 0/69 (0%)
Query 27 RVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGGEKPR 86
R++LL + C+RPRR GERKRKSVRGAI GPDL+VL LV+++KG ++ GLT P+
Sbjct 72 RIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPK 131
Query 87 RLGPKRANH 95
RLGPKRAN+
Sbjct 132 RLGPKRANN 140
> sce:YBR181C RPS6B, LPG18, RPS101, RPS102; Protein component
of the small (40S) ribosomal subunit; identical to Rps6Ap and
has similarity to rat S6 ribosomal protein; K02991 small subunit
ribosomal protein S6e
Length=236
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 0/69 (0%)
Query 27 RVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGGEKPR 86
R++LL + C+RPRR GERKRKSVRGAI GPDL+VL LV+++KG ++ GLT P+
Sbjct 72 RIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPK 131
Query 87 RLGPKRANH 95
RLGPKRAN+
Sbjct 132 RLGPKRANN 140
> ath:AT4G31700 RPS6; RPS6 (RIBOSOMAL PROTEIN S6); structural
constituent of ribosome; K02991 small subunit ribosomal protein
S6e
Length=188
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query 27 RVRLLFRTGMKCFRP--RRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGGEK 84
RVRLL G CFR RRTGER+RKSVRG I PDLSVLNLV+++KG D+PGLT EK
Sbjct 10 RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEK 69
Query 85 PRRLGPKRAN 94
PR GPKRA+
Sbjct 70 PRMRGPKRAS 79
> cel:Y71A12B.1 rps-6; Ribosomal Protein, Small subunit family
member (rps-6); K02991 small subunit ribosomal protein S6e
Length=246
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L N RVRLL + G C+R R+ GERKRKSVRG I ++S L+LV+++KG +I GLT
Sbjct 68 LTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDS 127
Query 83 EKPRRLGPKRAN 94
PR+LGPKRA+
Sbjct 128 VLPRKLGPKRAS 139
> mmu:639593 40S ribosomal protein S6-like
Length=249
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 50/72 (69%), Gaps = 0/72 (0%)
Query 23 LANHRVRLLFRTGMKCFRPRRTGERKRKSVRGAIEGPDLSVLNLVMLQKGPADIPGLTGG 82
L + RVRLL G C+R RRT ERK KSV I +LSVLNLV+++KG DIPGLT
Sbjct 68 LTHGRVRLLLNRGHPCYRLRRTVERKPKSVHRCIVDANLSVLNLVIVKKGEKDIPGLTDT 127
Query 83 EKPRRLGPKRAN 94
PRRLGPKRA+
Sbjct 128 TVPRRLGPKRAS 139
> tgo:TGME49_058030 DNA polymerase delta catalytic subunit, putative
(EC:2.7.7.7); K02327 DNA polymerase delta subunit 1 [EC:2.7.7.7]
Length=1268
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 0/22 (0%)
Query 59 PDLSVLNLVMLQKGPADIPGLT 80
P + + ++VMLQ PAD+PGL+
Sbjct 468 PVIQISSIVMLQSVPADLPGLS 489
> dre:402921 bcor; BCL6 co-repressor
Length=1777
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query 24 ANHRVRLLFRTGM--KCFRPRRTGERKRKSVRGAIEG 58
AN+RV +L R G+ +P RT E++ + V+G EG
Sbjct 1084 ANNRVPVLQRCGLPADVLQPHRTEEKRARDVKGEEEG 1120
Lambda K H
0.317 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2065224908
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40