bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_6463_orf1
Length=142
Score E
Sequences producing significant alignments: (Bits) Value
bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 100 1e-21
tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 98.2 7e-21
cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 85.1 7e-17
tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 84.0 2e-16
pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 80.5 2e-15
dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 69.7 2e-12
sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 68.6 6e-12
hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 65.1 6e-11
mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 65.1 7e-11
xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 64.3 1e-10
cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 62.4 4e-10
ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 62.0 5e-10
bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 60.1 2e-09
tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 58.9 5e-09
pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 57.8 1e-08
cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 57.4 1e-08
cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 56.6 3e-08
mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 56.2 3e-08
hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 55.8 4e-08
dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 55.8 4e-08
tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 55.5 6e-08
ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 55.1 8e-08
sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 54.7 9e-08
tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 54.7 1e-07
cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 54.7 1e-07
xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed... 54.3 1e-07
dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 53.9 2e-07
mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 53.9 2e-07
hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 53.9 2e-07
pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 53.5 2e-07
ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 52.8 3e-07
sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 52.8 4e-07
cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 51.6 8e-07
bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 50.1 3e-06
tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 49.7 3e-06
ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 37.0 0.020
ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 35.0 0.070
xla:734566 c12orf5, MGC115461, tigar; chromosome 12 open readi... 31.6 0.77
hsa:5320 PLA2G2A, MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1, sPLA... 31.6 0.79
dre:449792 cryba1c; zgc:101859 31.6 0.84
eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,... 31.2 1.1
ath:AT1G54560 XIE; XIE; motor/ protein binding 30.8 1.5
cel:C36A4.8 brc-1; BRCa homolog (tumor suppressor gene Brca1) ... 30.0 2.5
sce:YMR136W GAT2; Gat2p 29.6 3.1
dre:550433 cryba1l, zgc:112134; crystallin, beta A1, like 28.9 5.5
ath:AT3G12950 catalytic 28.1 8.5
> bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta
subunit; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1283
Score = 100 bits (250), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/54 (77%), Positives = 50/54 (92%), Gaps = 0/54 (0%)
Query 89 VTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142
V +VPV+YDY+E+SP+A LSVTAALTPFSNHNQSPRN+YQCQMLKQ+MG P+H
Sbjct 742 VIDNVPVKYDYMEVSPSAILSVTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYH 795
> tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2,
putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1388
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%), Gaps = 0/57 (0%)
Query 86 DALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142
DAL + PV+Y+YVEL +AFLS+ A+LTP+S+HNQSPRNIYQCQMLKQTMGTPFH
Sbjct 819 DALFSFSAPVKYEYVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFH 875
> cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed
RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1281
Score = 85.1 bits (209), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/52 (69%), Positives = 44/52 (84%), Gaps = 0/52 (0%)
Query 89 VTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTP 140
V S VPV Y ++EL P+ LSVTA+L P+++HNQSPRN+YQCQMLKQTMGTP
Sbjct 737 VLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTP 788
> tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1235
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query 50 NQGRLESDYQSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLS 109
N+ L + L + Q + S N ++ + + ++D + + PV Y+YVEL LS
Sbjct 680 NEYELNKSHNKLLDLQANPSAMNKVQVP-KPLKSLKDNEL-DNCPVLYEYVELDMCCILS 737
Query 110 VTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142
++A+LTPFSNHNQSPRN+YQCQMLKQ++G PFH
Sbjct 738 LSASLTPFSNHNQSPRNMYQCQMLKQSVGIPFH 770
> pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative;
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1517
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 41/47 (87%), Gaps = 0/47 (0%)
Query 92 HVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
+P +++Y+EL T+FLS A+LTPFS+HNQSPRNIYQCQMLKQTMG
Sbjct 925 QIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMG 971
> dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298,
wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1132
Score = 69.7 bits (169), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query 82 QEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141
+E+ D + T EL P + LSV A PFS+HNQSPRN+YQCQM KQTMG P
Sbjct 647 KEIEDGVTTHQ--------ELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPL 698
Query 142 H 142
H
Sbjct 699 H 699
> sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1203
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 0/42 (0%)
Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTP 140
+VE +PT LS+ A LTPFS+ NQSPRN+YQCQM KQTMGTP
Sbjct 688 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTP 729
> hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1079
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 7/66 (10%)
Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135
M+V F++ A VT+H EL P + LSV A PFS+HNQSPRN+YQCQM KQ
Sbjct 586 MNVAIFEDEVFAGVTTHQ-------ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638
Query 136 TMGTPF 141
TMG P
Sbjct 639 TMGFPL 644
> mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1135
Score = 65.1 bits (157), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 0/41 (0%)
Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141
EL P + LSV A PFS+HNQSPRN+YQCQM KQTMG P
Sbjct 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 700
> xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide
B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1134
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 0/49 (0%)
Query 93 VPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141
VP + EL P + LSV A PFS+HNQSPRN+YQCQM KQTMG P
Sbjct 651 VPGETTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 699
> cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1127
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142
EL P+ S L PF +HNQSPRN+YQCQM KQTMGT H
Sbjct 639 ELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVH 680
> ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1178
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%), Gaps = 0/38 (0%)
Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
E+ PT +SV A LTP+S+HNQSPRN+YQCQM KQTM
Sbjct 678 EIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMA 715
> bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta
subunit; K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1171
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 0/49 (0%)
Query 91 SHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
S + + ++E+SP + L V A L PF NHNQSPRN YQC M KQ++G+
Sbjct 699 SDITPKTTHLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 747
> tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1244
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 0/41 (0%)
Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
++E+SP + L V A L PF NHNQSPRN YQC M KQ++G+
Sbjct 755 HLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 795
> pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1450
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 0/63 (0%)
Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135
+DV + AL S + + ++E+ P L V A L P+ NHNQSPRN YQC M KQ
Sbjct 879 IDVNEQNNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQ 938
Query 136 TMG 138
+G
Sbjct 939 AIG 941
> cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1154
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query 83 EVRDALVTSH---VPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
E+ DAL+ + + ++E+ P L V A L P+ +HNQSPRN YQC M KQ MGT
Sbjct 650 EMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 709
> cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1287
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 0/41 (0%)
Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
++E+ P + L V + L P+ NHNQSPRN YQC M KQ MG+
Sbjct 807 HLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGS 847
> mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2;
polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1133
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 0/64 (0%)
Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135
+DV + AL + ++E+ P L V A L P+ +HNQSPRN YQC M KQ
Sbjct 633 LDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQ 692
Query 136 TMGT 139
MGT
Sbjct 693 AMGT 696
> hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase
(RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1075
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 0/64 (0%)
Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135
+DV + AL + ++E+ P L V A L P+ +HNQSPRN YQC M KQ
Sbjct 575 LDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQ 634
Query 136 TMGT 139
MGT
Sbjct 635 AMGT 638
> dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase
(RNA) III (DNA directed) polypeptide B; K03021 DNA-directed
RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1140
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 0/41 (0%)
Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
++E+ P L V A L P+ +HNQSPRN YQC M KQ MGT
Sbjct 653 HLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 693
> tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III
subunit RPC2 [EC:2.7.7.6]
Length=1332
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 0/53 (0%)
Query 87 ALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
AL + ++E+ P L V A L F NHNQSPRN YQC M KQ MG
Sbjct 824 ALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTYQCAMGKQAMGA 876
> ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1161
Score = 55.1 bits (131), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 0/40 (0%)
Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
++E+ P L V A L P+ +HNQSPRN YQC M KQ MG
Sbjct 678 HIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMG 717
> sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1224
Score = 54.7 bits (130), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135
+DV + +R SH + + E+ P+ L V A++ PF +HNQSPRN YQ M KQ
Sbjct 721 LDVDPAKRIR----VSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 776
Query 136 TMG 138
MG
Sbjct 777 AMG 779
> tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,
putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=1259
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 0/43 (0%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
Y + E+ P+ L V A++ PF +HNQSPRN+YQ M KQ MG
Sbjct 767 YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGV 809
> cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1177
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
Y + E+ P+ L V A++ PF +HNQSPRN+YQ M KQ MG
Sbjct 697 YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMG 738
> xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed)
polypeptide B, 140kDa; K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=949
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142
Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH
Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741
> dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed)
polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA
polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142
Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH
Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741
> mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase
(RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142
Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH
Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741
> hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA)
II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142
Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH
Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741
> pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit,
putative; K03010 DNA-directed RNA polymerase II subunit
RPB2 [EC:2.7.7.6]
Length=1340
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
+ + E+ P+ L V A++ PFS+HNQSPRN YQ M KQ MG
Sbjct 713 FTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMG 754
> ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase;
K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1188
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 0/42 (0%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG
Sbjct 701 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 742
> sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1149
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query 46 VVQDNQGRLESDY-QSLFNGQCD-SSTPNCGRMDVRGFQEVRD---ALVTSHVPVRYDYV 100
+V D Q R++ + + L +G+ D G ++ E D AL + ++
Sbjct 614 IVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHL 673
Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
E+ P L A L P+ +HNQSPRN YQC M KQ +G
Sbjct 674 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 711
> cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member
(rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1193
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142
+ E+ P L V A++ PF +HNQSPRN YQ M KQ MG T FH
Sbjct 701 HCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFH 747
> bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta
subunit family protein (EC:2.7.7.6); K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1207
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
Y + E+ P+ L V A++ PF + NQSPRN YQ M KQ MG
Sbjct 732 YTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMG 773
> tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1190
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138
Y + E+ P+ L V A++ PF + NQSPRN YQ M KQ MG
Sbjct 707 YTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMG 748
> ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA
polymerase/ ribonucleoside binding
Length=1055
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 0/38 (0%)
Query 94 PVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQ 131
P Y + EL + L V+ A+ PF+NH+ R +YQ Q
Sbjct 565 PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQ 602
> ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA
polymerase
Length=1172
Score = 35.0 bits (79), Expect = 0.070, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 0/38 (0%)
Query 94 PVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQ 131
P Y + EL + L V+ A+ PF+NH+ R +YQ Q
Sbjct 683 PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQ 720
> xla:734566 c12orf5, MGC115461, tigar; chromosome 12 open reading
frame 5 (EC:3.1.3.46); K14634 fructose-2,6-bisphosphatase
[EC:3.1.3.46]
Length=275
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query 49 DNQGRLESDYQSLF---NGQCDSSTPNCG------RMDVRGFQEVRDALVTSHVPVRYDY 99
D +GR S+ + + GQC S TP G R + F E LV + V+ +
Sbjct 94 DAEGRPLSELKVMAKKAGGQCPSYTPPGGETLEQVRACAKDFFEYLCQLVMAESSVK-EK 152
Query 100 VELSPTAFLSVTAA-LTPFSNHNQSP 124
EL + + + + L PF NHN+ P
Sbjct 153 SELGASGMVGIMSTDLAPFVNHNKEP 178
> hsa:5320 PLA2G2A, MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1, sPLA2;
phospholipase A2, group IIA (platelets, synovial fluid)
(EC:3.1.1.4); K01047 phospholipase A2 [EC:3.1.1.4]
Length=144
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 0/42 (0%)
Query 32 LRDQIAEVDNTEDTVVQDNQGRLESDYQSLFNGQCDSSTPNC 73
R Q+ E D T N+ YQ N C STP C
Sbjct 103 CRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC 144
> dre:449792 cryba1c; zgc:101859
Length=206
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 0/50 (0%)
Query 59 QSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHVPVRYDYVELSPTAFL 108
Q F G+C T C + RGF +R V S V Y++ + F+
Sbjct 29 QEHFQGKCQELTSECRNIQERGFDNIRSIRVESGAWVGYEHHDFQGQQFV 78
> eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,
ron, sdgB, stl, stv, tabD, tabG; RNA polymerase, beta subunit
(EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit
beta [EC:2.7.7.6]
Length=1342
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Query 98 DYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139
DY+++S +SV A+L PF H+ + R + M +Q + T
Sbjct 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692
> ath:AT1G54560 XIE; XIE; motor/ protein binding
Length=1529
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query 34 DQIAEVDNTEDTVVQDNQGRLESDYQSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHV 93
D + E N +D VQ G+ + S + D P G D+ + + V ++
Sbjct 27 DGLVEKINGQDVEVQATNGKKITAKLSKIYPK-DMEAPAGGVDDMTKLSYLHEPGVLQNL 85
Query 94 PVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141
+RY+ E+ T ++ A+ PF Q +IY M++Q G PF
Sbjct 86 KIRYELNEIY-TYTGNILIAINPF----QRLPHIYDAHMMQQYKGAPF 128
> cel:C36A4.8 brc-1; BRCa homolog (tumor suppressor gene Brca1)
family member (brc-1)
Length=547
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
Query 39 VDNTEDTVVQDNQGRLESDYQSLFNGQCDSSTPNCGR 75
V + +D VV+D++G L+ D L N C +S N G+
Sbjct 323 VASDDDEVVEDSEGELQIDEDDLANVTCATSVRNIGK 359
> sce:YMR136W GAT2; Gat2p
Length=560
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 0/32 (0%)
Query 67 DSSTPNCGRMDVRGFQEVRDALVTSHVPVRYD 98
+SS+P ++ + QE+ D++ T H+P YD
Sbjct 289 ESSSPFSNKIKLPSLQELTDSISTQHLPTFYD 320
> dre:550433 cryba1l, zgc:112134; crystallin, beta A1, like
Length=199
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 0/50 (0%)
Query 59 QSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHVPVRYDYVELSPTAFL 108
Q F G+C T C + GF +R V S V Y++ + F+
Sbjct 22 QEHFQGKCQEFTNECCNIQCCGFDNIRSIRVESGAWVGYEHHDFQGQQFI 71
> ath:AT3G12950 catalytic
Length=558
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query 1 AMVMLVATRSTGHVLLNERSMTAHQPLIEKILRDQIAEVDNTEDTVVQDNQGRLESDYQS 60
M +VA S +V L + + + L + Q+ +D E + +E +
Sbjct 440 GMSSMVADSSPPYVNLKKEKRSPEEKLEASLGPLQVQHIDLEERIETKGGAPSVEHQFMP 499
Query 61 LFNGQCDSST-PNCGRMD-VRGF 81
F+GQC +S P R D V GF
Sbjct 500 TFSGQCSASAWPETAREDLVAGF 522
Lambda K H
0.318 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2683748972
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40