bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_6454_orf1
Length=190
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helica... 347 2e-95
dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-... 243 3e-64
hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-... 241 9e-64
mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,... 241 1e-63
hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase... 239 4e-63
ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / A... 224 1e-58
cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing he... 222 7e-58
ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, put... 219 4e-57
xla:100158290 snrnp200, ascc3l1; small nuclear ribonucleoprote... 207 2e-53
ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6... 183 2e-46
hsa:10973 ASCC3, ASC1p200, DJ467N11.1, HELIC1, MGC26074, RNAH,... 177 2e-44
pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific prote... 174 2e-43
mmu:77987 Ascc3, ASC1p200, B630009I04Rik, BC023451, D430001L07... 173 3e-43
bbo:BBOV_III000950 17.m07111; sec63 domain containing protein ... 157 2e-38
cel:Y54E2A.6 hypothetical protein; K01529 [EC:3.6.1.-] 155 6e-38
dre:100332599 mutagen-sensitive 308-like 152 5e-37
sce:YGR271W SLH1; Putative RNA helicase related to Ski2p, invo... 144 2e-34
tgo:TGME49_049810 activating signal cointegrator 1 complex sub... 135 8e-32
tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-spli... 125 1e-28
sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.... 115 1e-25
pfa:PF14_0370 DEAD/DEAH box helicase, putative; K01509 adenosi... 113 3e-25
mmu:330149 Hfm1, A330009G12Rik, Gm1046, Sec63d1; HFM1, ATP-dep... 113 5e-25
bbo:BBOV_I001530 19.m02171; helicase 111 1e-24
tpv:TP01_0582 RNA helicase 107 2e-23
hsa:164045 HFM1, FLJ36760, FLJ39011, MER3, MGC163397, RP11-539... 107 3e-23
dre:557052 hfm1, si:ch211-83f14.5; HFM1, ATP-dependent DNA hel... 100 3e-21
cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helica... 99.8 5e-21
cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the sec... 99.4 7e-21
ath:AT3G27730 RCK; RCK (ROCK-N-ROLLERS); ATP binding / ATP-dep... 92.8 6e-19
cpv:cgd5_2970 hypothetical protein 91.7 1e-18
sce:YGL251C HFM1, MER3; Hfm1p (EC:3.6.1.-); K01529 [EC:3.6.1.-] 88.6 1e-17
dre:559653 skiv2l, fb70b07, wu:fb70b07; superkiller viralicidi... 46.2 6e-05
hsa:6499 SKIV2L, 170A, DDX13, HLP, SKI2, SKI2W, SKIV2; superki... 45.4 1e-04
mmu:108077 Skiv2l, 4930534J06Rik, AW214248, Ddx13, SKI, Ski2w;... 45.4 1e-04
dre:100331276 superkiller viralicidic activity 2-like; K12599 ... 45.1 1e-04
ath:AT1G59760 ATP-dependent RNA helicase, putative; K12598 ATP... 42.7 7e-04
sce:YLR398C SKI2; Ski complex component and putative RNA helic... 42.4 0.001
cel:W08D2.7 mtr-4; yeast MTR (mRNA TRansport) homolog family m... 41.6 0.002
ath:AT1G70070 EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP-dependen... 41.2 0.002
hsa:23517 SKIV2L2, Dob1, KIAA0052, MGC142069, Mtr4, fSAP118; s... 40.0 0.004
tpv:TP02_0517 hypothetical protein; K12598 ATP-dependent RNA h... 40.0 0.005
ath:AT3G46960 ATP binding / ATP-dependent helicase/ helicase/ ... 40.0 0.005
bbo:BBOV_II002350 18.m06191; helicase with zinc finger motif p... 39.7 0.006
tpv:TP04_0364 hypothetical protein; K12599 antiviral helicase ... 39.7 0.006
cpv:cgd8_2520 Mtr4p like SKI family SFII helicase ; K12598 ATP... 38.9 0.012
mmu:72198 Skiv2l2, 2610528A15Rik, mKIAA0052; superkiller viral... 38.5 0.013
dre:406795 skiv2l2, wu:fd11a05, zgc:63838; superkiller viralic... 38.1 0.016
bbo:BBOV_II005660 18.m06470; DSHCT (NUC185) domain containing ... 38.1 0.019
pfa:PFF0100w ATP-dependent RNA Helicase, putative (EC:3.6.1.-)... 37.7 0.025
tgo:TGME49_085660 DEAD/DEAH box helicase domain-containing pro... 37.4 0.031
> tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helicase,
putative ; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2198
Score = 347 bits (890), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 157/190 (82%), Positives = 179/190 (94%), Gaps = 0/190 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
VVV AEE AWGLQM +HLVVIVDTK+FTENGYEDY +ADVLQMLG ATRP IDKHG+ VL
Sbjct 1708 VVVVAEECAWGLQMYAHLVVIVDTKKFTENGYEDYTVADVLQMLGHATRPSIDKHGFAVL 1767
Query 61 LCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRL 120
CPSSKREFYKKF+FEPLP+ESQLEQ+L DH+NAEVVLKTIE+KQDAVDWLTW+FLYRRL
Sbjct 1768 FCPSSKREFYKKFVFEPLPVESQLEQNLVDHINAEVVLKTIENKQDAVDWLTWTFLYRRL 1827
Query 121 SKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFYYV 180
+KNPNYYGLQG SHQHLSD+LSELVES+VH+LEQAQC++E+NE++L+PLNLGL++AFYYV
Sbjct 1828 AKNPNYYGLQGVSHQHLSDYLSELVESSVHTLEQAQCVSEQNEVDLQPLNLGLVAAFYYV 1887
Query 181 KVATIELFNR 190
KV TIELFNR
Sbjct 1888 KVNTIELFNR 1897
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 114/196 (58%), Gaps = 6/196 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +H V+I T+ + + + + DVLQM+GRA RP D G+
Sbjct 862 VLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGAWAELSPMDVLQMMGRAGRPQYDTSGHA 921
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ S+ ++Y + LPIESQ+ L D +NAEVVL ++ S++DAV+WL +++LY
Sbjct 922 ILITQHSELQYYLSLNNQQLPIESQMLSCLPDMLNAEVVLGSVRSREDAVNWLGYTYLYV 981
Query 119 RLSKNPNYYGLQGTSHQH---LSDFLSELVESAVHSLEQAQCLAEKNEL-ELEPLNLGLI 174
R+ KNP+ YG+ + L LV+SA+ L++ + + ++ LG +
Sbjct 982 RMLKNPSLYGVPPEDAERDKLLEQHCVNLVDSALKILDKNFLIKYDRRMGAIQVTALGRV 1041
Query 175 SAFYYVKVATIELFNR 190
++ YY+K TI ++N+
Sbjct 1042 ASHYYIKYPTIAVYNQ 1057
> dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2134
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 151/191 (79%), Gaps = 2/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTE--NGYEDYPIADVLQMLGRATRPGIDKHGYV 58
VVVA+ WG +S+HLV+++DT+ + + Y DYPI DVLQM+G+A RP D G
Sbjct 1639 VVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGKANRPLQDDEGRC 1698
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V++C SK++F+KKF++EPLP+ES L+ L DH NAE+V KT+E+KQDAVD+LTW+FLYR
Sbjct 1699 VIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFLYR 1758
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
R+++NPNYY LQG SH+HLSD LSELVE+ + LEQ++C++ ++E+++ PLNLG+I+A+Y
Sbjct 1759 RMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCISIEDEMDVAPLNLGMIAAYY 1818
Query 179 YVKVATIELFN 189
Y+ TIELF+
Sbjct 1819 YINYTTIELFS 1829
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 114/199 (57%), Gaps = 12/199 (6%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +H V+I T+ ++ E G + + D+LQMLGRA RP D G
Sbjct 805 VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDSKGEG 864
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ + ++Y + + LPIESQ+ L D +NAE+VL +++ +DAV+WL +++LY
Sbjct 865 ILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNAEIVLGNVQNAKDAVNWLGYTYLYV 924
Query 119 RLSKNPNYYGLQGTSHQHLS-DFLSE-----LVESAVHSLEQAQCLA-EKNELELEPLNL 171
R+ +NP YG+ SH S D L E LV +A LE+ + +K + +L
Sbjct 925 RMLRNPTLYGV---SHDDRSIDPLLERRRMDLVHTAATVLEKNNLVKYDKRSGSFQVTDL 981
Query 172 GLISAFYYVKVATIELFNR 190
G I++ +Y+ +I +N+
Sbjct 982 GRIASHFYITHESIMTYNQ 1000
> hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-200KD;
small nuclear ribonucleoprotein 200kDa (U5) (EC:3.6.4.13);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2136
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 150/191 (78%), Gaps = 2/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTE--NGYEDYPIADVLQMLGRATRPGIDKHGYV 58
VVVA+ WG+ +++HLV+I+DT+ + + Y DYPI DVLQM+G A RP D G
Sbjct 1643 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1702
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V++C SK++F+KKF++EPLP+ES L+ + DH NAE+V KTIE+KQDAVD+LTW+FLYR
Sbjct 1703 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1762
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
R+++NPNYY LQG SH+HLSD LSELVE + LEQ++C++ ++E+++ PLNLG+I+A+Y
Sbjct 1763 RMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYY 1822
Query 179 YVKVATIELFN 189
Y+ TIELF+
Sbjct 1823 YINYTTIELFS 1833
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +H V+I T+ ++ E G + + D+LQMLGRA RP D G
Sbjct 808 VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEG 867
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ + ++Y + + LPIESQ+ L D +NAE+VL +++ +DAV+WL +++LY
Sbjct 868 ILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYI 927
Query 119 RLSKNPNYYGLQGTSHQHLSD--FLSELVESAVHSLEQAQCLAEKNEL--------ELEP 168
R+ ++P YG+ SH L L + VH+ A + +KN L +
Sbjct 928 RMLRSPTLYGI---SHDDLKGDPLLDQRRLDLVHT---AALMLDKNNLVKYDKKTGNFQV 981
Query 169 LNLGLISAFYYVKVATIELFNR 190
LG I++ YY+ T++ +N+
Sbjct 982 TELGRIASHYYITNDTVQTYNQ 1003
> mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,
KIAA0788, U5-200-KD, U5-200KD; small nuclear ribonucleoprotein
200 (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase
BRR2 [EC:3.6.4.13]
Length=2136
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 150/191 (78%), Gaps = 2/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTE--NGYEDYPIADVLQMLGRATRPGIDKHGYV 58
VVVA+ WG+ +++HLV+I+DT+ + + Y DYPI DVLQM+G A RP D G
Sbjct 1643 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1702
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V++C SK++F+KKF++EPLP+ES L+ + DH NAE+V KTIE+KQDAVD+LTW+FLYR
Sbjct 1703 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1762
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
R+++NPNYY LQG SH+HLSD LSELVE + LEQ++C++ ++E+++ PLNLG+I+A+Y
Sbjct 1763 RMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYY 1822
Query 179 YVKVATIELFN 189
Y+ TIELF+
Sbjct 1823 YINYTTIELFS 1833
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +H V+I T+ ++ E G + + D+LQMLGRA RP D G
Sbjct 808 VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEG 867
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ + ++Y + + LPIESQ+ L D +NAE+VL +++ +DAV+WL +++LY
Sbjct 868 ILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYI 927
Query 119 RLSKNPNYYGLQGTSHQHLSD--FLSELVESAVHSLEQAQCLAEKNEL--------ELEP 168
R+ ++P YG+ SH L L + VH+ A + +KN L +
Sbjct 928 RMLRSPTLYGI---SHDDLKGDPLLDQRRLDLVHT---AALMLDKNNLVKYDKKTGNFQV 981
Query 169 LNLGLISAFYYVKVATIELFNR 190
LG I++ YY+ T++ +N+
Sbjct 982 TELGRIASHYYITNDTVQTYNQ 1003
> hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase-like
Length=1700
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 149/191 (78%), Gaps = 2/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTE--NGYEDYPIADVLQMLGRATRPGIDKHGYV 58
VVVA+ WG+ +++HLV+I+DT + + Y DYPI DVLQM+G A RP D G
Sbjct 1207 VVVASRSLCWGMNVAAHLVIIMDTLYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1266
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V++C SK++F+KKF++EPLP+ES L+ + DH NAE+V KTIE+KQDAVD+LTW+FLYR
Sbjct 1267 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1326
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
R+++NPNYY LQG SH+HLSD LSELVE + LEQ++C++ ++E+++ PLNLG+I+A+Y
Sbjct 1327 RMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYY 1386
Query 179 YVKVATIELFN 189
Y+ TIELF+
Sbjct 1387 YINYTTIELFS 1397
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +H V+I T+ ++ E G + + D+LQMLGRA RP D G
Sbjct 372 VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEG 431
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ + ++Y + + LPIESQ+ L D +NAE+VL +++ +DAV+WL +++LY
Sbjct 432 ILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYI 491
Query 119 RLSKNPNYYGLQGTSHQHLSD--FLSELVESAVHSLEQAQCLAEKNEL--------ELEP 168
R+ ++P YG+ SH L L + VH+ A + +KN L +
Sbjct 492 RMLRSPTLYGI---SHDDLKGDPLLDQRRLDLVHT---AALMLDKNNLVKYDKKTGNFQV 545
Query 169 LNLGLISAFYYVKVATIELFNR 190
LG I++ YY+ T++ +N+
Sbjct 546 TELGRIASHYYITNDTVQTYNQ 567
> ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding /
ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/
nucleotide binding; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2171
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 143/191 (74%), Gaps = 2/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V V + WG +++HLVV++ T+ + EN + DYP+ D+LQM+GRA+RP +D G
Sbjct 1670 VCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKC 1729
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+ C + ++E+YKKF++E P+ESQL+ L D+ NAEVV IE+KQDAVD+LTW+F+YR
Sbjct 1730 VIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYR 1789
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
RL +NPNYY LQG SH+HLSD LSELVE+ + LE ++C+ ++E+EL PLNLG+I+++Y
Sbjct 1790 RLPQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSPLNLGMIASYY 1849
Query 179 YVKVATIELFN 189
Y+ TIE F+
Sbjct 1850 YISYTTIERFS 1860
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 112/195 (57%), Gaps = 6/195 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +H V+I T+ + + + + DV+QMLGRA RP D+HG
Sbjct 832 VLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEG 891
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ S+ ++Y + E LPIESQ L D +NAE+VL T+++ ++A WL +++LY
Sbjct 892 IIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYI 951
Query 119 RLSKNPNYYGLQGTSHQH---LSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGLI 174
R+ +NP YGL + L + ++L+ SA L++ + ++ + +LG I
Sbjct 952 RMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRI 1011
Query 175 SAFYYVKVATIELFN 189
+++YY+ TI +N
Sbjct 1012 ASYYYITHGTIATYN 1026
> cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2145
Score = 222 bits (565), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 145/193 (75%), Gaps = 6/193 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENG----YEDYPIADVLQMLGRATRPGIDKHG 56
V V + ++MS++LVV++DT+ + NG YEDYPIAD+L M+G A RP +D
Sbjct 1642 VCVVPRGMCYQIEMSAYLVVVMDTQFY--NGKYHVYEDYPIADMLHMVGLANRPILDSDA 1699
Query 57 YVVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFL 116
V++C +SKR +YKKF+ +PLP+ES L+ L DH NAE+V KTIE+KQDA+D+LTW+ L
Sbjct 1700 KCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLL 1759
Query 117 YRRLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISA 176
YRR+++NPNYY LQGT+H+HLSD LSELVE + LE ++C+A K+E++ LNLG+I++
Sbjct 1760 YRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIAS 1819
Query 177 FYYVKVATIELFN 189
+YY+ TIELF+
Sbjct 1820 YYYISYQTIELFS 1832
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 111/196 (56%), Gaps = 6/196 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+ + AWG+ + +H V+I T+ + E G + + D++QMLGRA RP D G
Sbjct 801 VLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEG 860
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ S+ ++Y + + LP+ESQ+ L D +NAEVVL T+ S +A +WL ++FL+
Sbjct 861 ILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFV 920
Query 119 RLSKNPNYYGL---QGTSHQHLSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGLI 174
R+ KNP YG+ Q + L ++L+ +A L++A + +K ++ LG I
Sbjct 921 RMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRI 980
Query 175 SAFYYVKVATIELFNR 190
++ +Y +++ +N+
Sbjct 981 ASHFYCTYESMQTYNK 996
> ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, putative
Length=2172
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 2/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V V + WG + +HLVV++ T + EN + DYPI+++LQM+GR +RP +D G
Sbjct 1671 VCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKC 1730
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+ C + ++E+YKKF++E LP+ES L+ L D+ NAEVV + IE+KQDAVD+LTWSF+YR
Sbjct 1731 VIFCHAPRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYR 1790
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
RL +NPNYY L G SH+HLSD LSELVE+ + LE ++C+ NEL+L PLNLG+I+++Y
Sbjct 1791 RLPQNPNYYNLLGVSHRHLSDHLSELVENTLSDLEVSKCIEIDNELDLSPLNLGMIASYY 1850
Query 179 YVKVATIELFN 189
Y+ TIE F+
Sbjct 1851 YINYTTIERFS 1861
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 8/196 (4%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG--YEDYPIADVLQMLGRATRPGIDKHGY 57
V+++ AWG+ + +H V+I T+ + E G E P+ DV+QM+GRA RP D+ G
Sbjct 833 VLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPL-DVMQMIGRAGRPQYDQQGE 891
Query 58 VVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLY 117
+++ SK ++Y + + E LPIESQ L D +NAE+VL TI++ ++A WL +++LY
Sbjct 892 GIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLY 951
Query 118 RRLSKNPNYYGLQGTSHQH---LSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGL 173
R+ +NP YG+ + L + ++L+ SA L++ + ++ + +LG
Sbjct 952 VRMVRNPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGR 1011
Query 174 ISAFYYVKVATIELFN 189
I+++YY+ TI +N
Sbjct 1012 IASYYYISHGTIAAYN 1027
> xla:100158290 snrnp200, ascc3l1; small nuclear ribonucleoprotein
200kDa (U5); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=457
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 123/151 (81%), Gaps = 0/151 (0%)
Query 39 DVLQMLGRATRPGIDKHGYVVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVL 98
DVLQM+G A RP D G V++C SK++F+KKF++EPLP+ES L+ + DH NAE+V
Sbjct 4 DVLQMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVT 63
Query 99 KTIESKQDAVDWLTWSFLYRRLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCL 158
KTIE+KQDAVD+LTW+FLYRR+++NPNYY LQG SH+HLSD LSELVE + LEQ++C+
Sbjct 64 KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEHTLSDLEQSKCI 123
Query 159 AEKNELELEPLNLGLISAFYYVKVATIELFN 189
+ ++E+++ PLNLG+I+A+YY+ TIELF+
Sbjct 124 SIEDEMDVAPLNLGMIAAYYYINYTTIELFS 154
> ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6.1.-]
Length=2146
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 127/191 (66%), Gaps = 3/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + +HLV+I T+ F Y D+P+ ++LQM+GRA RP D+HG
Sbjct 1660 VLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKA 1719
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+L K+ FYKKF++EP P+ES L++ L DH NAE+V TI +K+DAV +LTW++L+R
Sbjct 1720 VILVHEPKKSFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFR 1779
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFY 178
RL NP YYGL+GT + + +LS LV++ LE + CL + NE +EP LG I++ Y
Sbjct 1780 RLMANPAYYGLEGTQDETICSYLSRLVQTTFEDLEDSGCL-KVNEDSVEPTMLGTIASQY 1838
Query 179 YVKVATIELFN 189
Y+ T+ +F
Sbjct 1839 YLCYMTVSMFG 1849
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 109/195 (55%), Gaps = 6/195 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H VVI T+ + G++D + DV+Q+ GRA RP DK G
Sbjct 835 VLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEG 894
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ K +Y + + LPIESQ L+D++NAEVVL T+ + ++A WL +++L
Sbjct 895 IIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSI 954
Query 119 RLSKNPNYYGL---QGTSHQHLSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGLI 174
R+ NP YG+ + + LS LV A SL++A+ + ++ LG +
Sbjct 955 RMKLNPLAYGIGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRV 1014
Query 175 SAFYYVKVATIELFN 189
++ +Y++ +++E +N
Sbjct 1015 ASHFYIQYSSVETYN 1029
> hsa:10973 ASCC3, ASC1p200, DJ467N11.1, HELIC1, MGC26074, RNAH,
dJ121G13.4; activating signal cointegrator 1 complex subunit
3; K01529 [EC:3.6.1.-]
Length=2202
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 125/192 (65%), Gaps = 5/192 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V++A AWG+ +HLV+I T+ + Y D+PI DVLQM+GRA RP D G
Sbjct 1642 VLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKA 1701
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+L K++FYKKF++EP P+ES L L DH+NAE+ TI SKQDA+D++TW++ +R
Sbjct 1702 VILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFR 1761
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQC--LAEKNELELEPLNLGLISA 176
RL NP+YY L SH ++ FLS L+E ++ LE + C + E N +EPL G I++
Sbjct 1762 RLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNR-SIEPLTYGRIAS 1820
Query 177 FYYVKVATIELF 188
+YY+K T+++F
Sbjct 1821 YYYLKHQTVKMF 1832
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 6/195 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H V+I T+ + + D I DV+Q+ GRA RP DK G
Sbjct 805 VLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEG 864
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ K Y + + PIESQ + L D++NAE+ L T+ + ++AV W+++++LY
Sbjct 865 IIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYV 924
Query 119 RLSKNPNYYGLQGTSHQ---HLSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGLI 174
R+ NP YG+ ++Q L +LV L++AQ + E+ +LG
Sbjct 925 RMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRT 984
Query 175 SAFYYVKVATIELFN 189
++ YY+K TIE FN
Sbjct 985 ASHYYIKYNTIETFN 999
> pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific protein,
putative; K01509 adenosinetriphosphatase [EC:3.6.1.3]
Length=2874
Score = 174 bits (441), Expect = 2e-43, Method: Composition-based stats.
Identities = 82/193 (42%), Positives = 131/193 (67%), Gaps = 3/193 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDT--KRFTENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
+++ + + + L + ++ V+I+DT F N EDY I ++L+M+ A R D +V
Sbjct 2333 ILIVSYDYIYSLNVYANNVIILDTIITHFHNNKEEDYSIQNILEMISYAGRQNEDTKAFV 2392
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+ +K+E+YK FI+EPL +ES +E +L + +N E+V+ TIE+ QDA+DWLTWSF YR
Sbjct 2393 YIYTYITKKEYYKNFIYEPLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYR 2452
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCL-AEKNELELEPLNLGLISAF 177
R+ KNPNYYGL+G S++H+SD+LSEL+E+ + L A C+ E+ ++++P NLG+IS+F
Sbjct 2453 RIKKNPNYYGLKGISNEHISDYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSF 2512
Query 178 YYVKVATIELFNR 190
Y + I FN+
Sbjct 2513 YNLDYHIIHFFNQ 2525
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTEN--GYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H V+I T + N +++ DVLQM+GR+ RP DK G
Sbjct 1129 VLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKA 1188
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ + Y E L IES L ++ + +NAE+VLK I++ DA++WL +++Y
Sbjct 1189 IIITDHKNLQLYLSLNNEQLFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYI 1248
Query 119 RLSKNPNYYGL 129
R+ K P+ YG+
Sbjct 1249 RMLKCPSLYGV 1259
> mmu:77987 Ascc3, ASC1p200, B630009I04Rik, BC023451, D430001L07Rik,
D630041L21, Helic1, RNAH; activating signal cointegrator
1 complex subunit 3; K01529 [EC:3.6.1.-]
Length=2198
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 123/192 (64%), Gaps = 5/192 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V++A AWG+ +HLV+I T+ + Y D+PI DVLQM+GRA RP D G
Sbjct 1643 VLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKA 1702
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+L K++FYKKF++EP P+ES L L DH+NAE+ TI SKQDA+D++TW++ +R
Sbjct 1703 VILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFR 1762
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCL--AEKNELELEPLNLGLISA 176
RL NP+YY L S ++ FLS L+ ++ LE + C+ E N +EPL G I++
Sbjct 1763 RLIMNPSYYSLGDVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNR-TIEPLTCGRIAS 1821
Query 177 FYYVKVATIELF 188
+YY+K T+++F
Sbjct 1822 YYYLKHKTVKMF 1833
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 6/195 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H VVI T+ + + D I DV+Q+ GRA RP DK G
Sbjct 806 VLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEG 865
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ K Y + + PIESQ + L D++NAE+ L T+ + ++AV W+++++LY
Sbjct 866 IIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYV 925
Query 119 RLSKNPNYYGLQGTSHQ---HLSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGLI 174
R+ NP YG+ ++Q L +L+ L++A+ + E+ +LG
Sbjct 926 RMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRT 985
Query 175 SAFYYVKVATIELFN 189
++ +Y+K TIE FN
Sbjct 986 ASHFYIKYNTIETFN 1000
> bbo:BBOV_III000950 17.m07111; sec63 domain containing protein
(EC:3.6.1.-); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2133
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 118/192 (61%), Gaps = 5/192 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTEN---GYEDYPIADVLQMLGRATRPGIDKH-G 56
V++ A W + + + +VVI D N YP D+ +ML A H
Sbjct 1659 VLICTASAIWTMSIYAPVVVIADITVSATNRPISQSMYPQTDLTRMLSCAYVSDDAAHRP 1718
Query 57 YVVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFL 116
++L SSKR K + + P+ES LE +++ +NAE+V IES QDA+DWLTW+
Sbjct 1719 QALILYESSKRRQLYKLLEDAFPVESCLENRIEELINAEIVQGAIESPQDAIDWLTWTLY 1778
Query 117 YRRLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISA 176
YRRL+KNPNYY +QGTS QH+SD LSELVES SLE+AQC++ ++ + PLNLG I+A
Sbjct 1779 YRRLTKNPNYYSMQGTSAQHMSDHLSELVESTFASLEKAQCVS-MDDAGVTPLNLGYIAA 1837
Query 177 FYYVKVATIELF 188
FYY++ TI+ F
Sbjct 1838 FYYLRCRTIDTF 1849
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
++++ +WG+ + +H V+I T+ ++ E + + V QMLGRA RP DK G
Sbjct 807 LLISTATLSWGVNLPAHTVIIKGTQVYSPEEGCWTELCPLSVQQMLGRAGRPQYDKEGKG 866
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ SK +FY + LPIESQL L D +NAE+VL I ++ DAV WL ++
Sbjct 867 IIITSHSKLQFYLSLNNQQLPIESQLVTTLPDLLNAEIVLGNITTRNDAVTWLGDTYFSI 926
Query 119 RLSKNPNYYGL--QGTSHQHLSDFLSELVESAVHSL-----EQAQCLAEKNELELEPLNL 171
R+ + P Y + + D S +ES HS + A E+ ++ L
Sbjct 927 RMRREPRLYSVITDDDDAEPTEDMFSARLESLAHSALLELDKHALIRYERRSGAIKATPL 986
Query 172 GLISAFYYVKVATIELF 188
G I++ YY+K +++ +
Sbjct 987 GRIASLYYLKPPSVKTY 1003
> cel:Y54E2A.6 hypothetical protein; K01529 [EC:3.6.1.-]
Length=1798
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 121/191 (63%), Gaps = 3/191 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V++A AWG+ +HLV++ T+ F + Y D+P+ DVLQM+GRA RP D
Sbjct 1279 VLIATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVA 1338
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+ +K+ FYKKF++EP P+ES L L +HVNAE+ TI+SKQ V++L+ ++LYR
Sbjct 1339 VIYVQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQAIVEYLSKTYLYR 1398
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELE-LEPLNLGLISAF 177
RL NPNYYGL+ S + + F++++V+ +V L ++C+ +E + ++P G I++
Sbjct 1399 RLFANPNYYGLEEDSEEAMLKFITKIVDDSVAELLASECIHVDSEQDVIKPTPCGRIASV 1458
Query 178 YYVKVATIELF 188
YY++ T+
Sbjct 1459 YYLQHETVRFL 1469
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF-TENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+ AWG+ + +H VVI T F E G + D + DV Q+ GRA RP + G+
Sbjct 426 VLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGRPQFENEGHG 485
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ K + Y + PIESQ L D++NAEV L T+ + + V+WLT++++Y
Sbjct 486 IIITTRDKIDKYLTMLVHQNPIESQFYARLHDNLNAEVALGTVSTVDEGVEWLTYTYMYT 545
Query 119 RLSKNPNYYGLQGTSHQ---HLSDFLSELVESAVHSLEQAQCLAEKNELE-LEPLNLGLI 174
R KNP YG+ + + +L D ++ A L+Q + + E L +LG I
Sbjct 546 RALKNPMAYGIAYNAIERDPNLRDHFGNVIREAAMQLDQNKMIRFDMATEYLNSTDLGRI 605
Query 175 SAFYYVKVATIELFN 189
++ +YVK TI+L N
Sbjct 606 ASNFYVKYETIQLLN 620
> dre:100332599 mutagen-sensitive 308-like
Length=864
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query 41 LQMLGRATRPGIDKHGYVVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKT 100
+QM+GRA RP D G V+L K++FYKKF++EP P+ES L L DH+NAE+ T
Sbjct 518 IQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLSVLSDHLNAEIAAGT 577
Query 101 IESKQDAVDWLTWSFLYRRLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCL-A 159
+ SKQDA+D++TW++ +RRL NP+YY L SH+ ++ +LS LVE ++ LE + C+
Sbjct 578 VTSKQDAMDYITWTYFFRRLVMNPSYYNLDDISHETINKYLSNLVERSLRDLECSYCMEI 637
Query 160 EKNELELEPLNLGLISAFYYVKVATIELF 188
+++E +EPL G IS++YY+K TI +F
Sbjct 638 QQDEQTIEPLTYGRISSYYYLKHQTIRMF 666
> sce:YGR271W SLH1; Putative RNA helicase related to Ski2p, involved
in translation inhibition of non-poly(A) mRNAs; required
for repressing propagation of dsRNA viruses (EC:3.6.1.-);
K01529 [EC:3.6.1.-]
Length=1967
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 6/189 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTEN--GYEDYPIADVLQMLGRATRPGIDKHGYV 58
+++A AWG+ + +HLV+I T+ F GY D + D+LQM+GRA RP D G
Sbjct 1457 ILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTA 1516
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
++ SK+ FYK F+ P+ES L + L DH+ AE+ +I +KQ+A+D+L+W+FL+R
Sbjct 1517 IVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFR 1576
Query 119 RLSKNPNYYGLQ-GTSHQHLSDFLSELVESAVHSLEQAQC-LAEKNELELEPLNLGLISA 176
R NP YYG++ TS +S+ LS L++S + +L ++QC L +++ P IS+
Sbjct 1577 RAHHNPTYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHGDDIVATP--FLSISS 1634
Query 177 FYYVKVATI 185
+YY+ TI
Sbjct 1635 YYYISHLTI 1643
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+ AWG+ + + V+I T+ + + G+ D I+DV+Q+ GR RPG
Sbjct 621 VLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGT 680
Query 59 VLLCPSSKR-EFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLY 117
+LC S+ R + Y I + PIES+ L D++NAE+ L ++ + +A++WL +++++
Sbjct 681 GILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMF 740
Query 118 RRLSKNPNYYGL---QGTSHQHLSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGL 173
R+ KNP YG+ + + L + +++ A L Q + ++ + +LG
Sbjct 741 VRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGR 800
Query 174 ISAFYYVKVATIELFNR 190
+S+ +Y+ ++E+FN+
Sbjct 801 VSSDFYLLNESVEIFNQ 817
> tgo:TGME49_049810 activating signal cointegrator 1 complex subunit
3, putative (EC:5.99.1.3)
Length=2539
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTE--NGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+VA AWG+ + + LVV+ T+ + N Y+D+PI D+LQM+GRA RP D
Sbjct 1901 VLVATATLAWGMNLPARLVVVKGTEYYDAETNRYKDFPITDLLQMIGRAGRPQFDSQAVA 1960
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V+ C K+ FYK+F+++P P+ES L L +H+NAE+V TI++KQ A+++LTW++ +R
Sbjct 1961 VIFCHEPKKNFYKRFLYQPFPVESCLLNVLAEHLNAEIVGGTIQTKQQAIEYLTWTYFFR 2020
Query 119 RLSKNPNYYGLQGTSHQHLSDFLS---ELVESAVHS--------LEQAQCLAEKNELELE 167
RL+ NP+YY S F S L SAV +++A C A LE
Sbjct 2021 RLTSNPSYYDPSLMIQDFTSSFASRGDRLQASAVRQRRAAIAAFVDKAVCEALDELLEAS 2080
Query 168 PLNLGLISAFYYVKVAT 184
L L +A ++ T
Sbjct 2081 ALRLRFPTAEEKLQAVT 2097
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query 9 AWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYVVLLCPSSK 66
AWG+ + + V+I T + G+ D + DVLQ+ GRA RP D G VL+ +
Sbjct 1021 AWGVNLPARTVIIKGTSVYDSKSGGFRDISVLDVLQIFGRAGRPQYDTRGSAVLITEGHE 1080
Query 67 REF-YKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRLSKNPN 125
R Y + LP+ES+ ++L++ +NAEV + T+ S +AVDWL ++F + R+ +NP
Sbjct 1081 RLMRYVGQLTHSLPVESKFLENLENALNAEVAIGTVSSVDEAVDWLRYTFCFVRMCRNPR 1140
Query 126 YYGLQGT---SHQHLSDFLSELVESAVHSLEQAQCLAEKNELE-LEPLNLGLISAFYYVK 181
YG T L +L+ A +L + + + + + L+P NLG ++ YYV
Sbjct 1141 VYGADETILMDDPELCALRRKLIVDAAETLHKHRLIRFNSRTQRLDPTNLGRMACRYYVD 1200
Query 182 VATIELFNR 190
T LF +
Sbjct 1201 YETASLFRQ 1209
> tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2249
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 19/207 (9%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVD-----TKR-FTENGYEDYPIADVLQMLGRATR-PGID 53
V++ + W L + V++ D T R +N Y Y + +L + + D
Sbjct 1763 VLIVTSQVLWNLNIKCPYVIVADVNASYTNRPLVQNYYTQYDLQYILSLANPTSNYDKSD 1822
Query 54 KHG----YVVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVD 109
H + L ++K+E K+ +++ + +ES LE L++ +N E+V I++ Q+A+D
Sbjct 1823 DHEDEDLECIFLLENNKKEEVKRMLYDSVVVESNLELSLEEALNNEIVRGLIKTPQEAID 1882
Query 110 WLTWSFLYRRLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNEL----- 164
WLTW+F YRRLSKNPNYY L T+ QHLS+ LSEL+E+ +++L+ + +L
Sbjct 1883 WLTWTFYYRRLSKNPNYYSLIATTPQHLSEHLSELIENTIYNLKNMGLIQTSQDLPDSEE 1942
Query 165 ---ELEPLNLGLISAFYYVKVATIELF 188
E+ +NLG I++FY V+ TIELF
Sbjct 1943 EIEEIMAVNLGHIASFYSVRCGTIELF 1969
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 24/212 (11%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
++V+ +WG+ + + +V+I T+ + + +++ V QM+GRA RP D G
Sbjct 833 LLVSTATLSWGVNLPAGVVIIKGTQIYVPEQGSWDELCPLSVQQMMGRAGRPQFDTFGKG 892
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ + K ++Y + LPIESQL L + +N+E+VL+ I + Q A++W+ ++LY
Sbjct 893 IIITANEKLQYYLSLNNQQLPIESQLIAKLPEVLNSEIVLRNITNLQQALEWIKTTYLYV 952
Query 119 RLSKNPNYYGLQ---------------------GTSHQHLSDFLSELVESAVHSLEQAQC 157
R+ KNP YG + + L ++L L+ S+ LE+
Sbjct 953 RVKKNPLLYGFETEDEELDEDDNMEGEEDKPEPKIDMEKLENYLLVLINSSFVHLEKNGL 1012
Query 158 LA-EKNELELEPLNLGLISAFYYVKVATIELF 188
+ E+ + LG+I++ YY++ +I+++
Sbjct 1013 IKYERKSGMVTSTGLGVIASNYYLRPESIKIY 1044
> sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.-);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2163
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 4/194 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT--ENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H V+I T ++ + +E DVLQMLGRA RP D G
Sbjct 827 VLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEG 886
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ S ++Y + + LPIESQ L D++NAEVV I+ + DAV+WL +++LY
Sbjct 887 IIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYV 946
Query 119 RLSKNPNYYGLQG-TSHQHLSDFLSELVESAVHSL-EQAQCLAEKNELELEPLNLGLISA 176
R+ +P Y + +S L F LV SA+ L EQ L + +E +LG I++
Sbjct 947 RMLASPMLYKVPDISSDGQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIAS 1006
Query 177 FYYVKVATIELFNR 190
+Y+ A+++++NR
Sbjct 1007 SFYINHASMDVYNR 1020
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 109/189 (57%), Gaps = 21/189 (11%)
Query 19 VVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKH-GYVVLLCPSSKREFYKKFIF 75
V+I+ T + E+ Y Y I ++L+M+G A+ G D G V++L + + +YKKF+
Sbjct 1680 VIILGTNLYDGAEHKYMPYTINELLEMVGLAS--GNDSMAGKVLILTSHNMKAYYKKFLI 1737
Query 76 EPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRLSKNPNYYGLQGTSHQ 135
EPLP ES L+ + D +N E+ I+SKQD VDW T+S+ YRR+ NP+YYG++ TS
Sbjct 1738 EPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPH 1797
Query 136 HLSDFLSELVESAVHSL----------EQAQCLAEKNELE------LEPLNLGLISAFYY 179
+S FLS LVE+ ++ L +A+ AE N + + L+ GLI++ Y
Sbjct 1798 GISVFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYG 1857
Query 180 VKVATIELF 188
V TI+ F
Sbjct 1858 VSFFTIQSF 1866
> pfa:PF14_0370 DEAD/DEAH box helicase, putative; K01509 adenosinetriphosphatase
[EC:3.6.1.3]
Length=2472
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 18/206 (8%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
+++ AWG+ + ++LV+I + + Y+D P D+LQM+GRA RP D
Sbjct 1841 ILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALA 1900
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+LL ++ K F++ P+ IES + ++ +H+NAE+ I +K+D ++LT S+ ++
Sbjct 1901 ILLVQEKRKNAIKNFLYHPMNIESNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFK 1960
Query 119 RLSKNPNYY-------------GLQGTSHQHLSDFLSELVESAVHSLEQAQCL---AEKN 162
RL NP+YY L + + + D L++++E+ + L Q +CL E
Sbjct 1961 RLFSNPSYYIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENY 2020
Query 163 ELELEPLNLGLISAFYYVKVATIELF 188
L LG I++ YY+K T+ F
Sbjct 2021 VLNYYATPLGHIASMYYIKCETVYFF 2046
Score = 95.5 bits (236), Expect = 9e-20, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 5/192 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+ AWG+ + H V+I T F+ E+G ED I D+ Q+ GR RP + HG+
Sbjct 782 VLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHA 841
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+L+ +K Y K + IES +++++H+NAE+ + TI++ +D + WL +++L+
Sbjct 842 ILITERTKLYKYIKLLTNNTVIESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFI 901
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLN--LGLISA 176
R+ KNP Y + + +L + +++ A+ +L + + L + L + + G I+A
Sbjct 902 RMKKNPYLYDVDINNDLNLYNKRKDIIMKAIQNLSENK-LVRRVLLTNDFIGTFYGQIAA 960
Query 177 FYYVKVATIELF 188
YYV TI +F
Sbjct 961 KYYVDYKTIGMF 972
> mmu:330149 Hfm1, A330009G12Rik, Gm1046, Sec63d1; HFM1, ATP-dependent
DNA helicase homolog (S. cerevisiae)
Length=1434
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A G+ M +HLVVI T ++ +E+Y D+LQM+GRA RP D V+
Sbjct 607 VLFTTSTLAMGMNMPAHLVVIKSTMHYSGGVFEEYSETDILQMIGRAGRPQFDTTATAVI 666
Query 61 LCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRL 120
+ S RE Y + + +ES L +HL +H+NAE+VL TI A+DW+ + LY R
Sbjct 667 MTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDVNIALDWIRSTMLYIRA 726
Query 121 SKNPNYYGL-QGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFYY 179
KNP++YG G + + L EL + L + ++ +P G + A+YY
Sbjct 727 LKNPSHYGFSSGLNKDGIEAKLQELCLKNLKDLSSLDLIKMDEDVNFKPTEAGRLMAWYY 786
Query 180 VKVATIELF 188
+ T++ F
Sbjct 787 ITFETVKKF 795
> bbo:BBOV_I001530 19.m02171; helicase
Length=1798
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 19/202 (9%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V++A AWG+ + + +V++ T+ + Y DY + D+LQM+GRA R DK Y
Sbjct 1351 VLIATATLAWGVNLPAKIVIVKGTEYYDGKTKKYADYSVTDILQMVGRAGRRVFDKEAYA 1410
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+ S K +FYK F+F P P ES + L D +N+E+ TI +K + +L +F ++
Sbjct 1411 YVYTESRKVDFYKAFMFSPFPAESSFHERLLDSMNSEIASGTIANKAQGLQYLKNTFFFK 1470
Query 119 RLSKNPNYY-------GLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELE------ 165
RL KNP YY G +G + D + ++ V L + C++ K+
Sbjct 1471 RLKKNPQYYLNIDLFNGYEG--ELAIEDLTNWVISKCVEKLNELGCISTKSTATSVYNDD 1528
Query 166 --LEPLNLGLISAFYYVKVATI 185
P +G++++ YY+ T+
Sbjct 1529 NVFIPSIIGILASQYYISCETM 1550
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 105/191 (54%), Gaps = 5/191 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIA--DVLQMLGRATRPGIDKHGYV 58
V+V+ AWG+ + ++ V+I T F D I ++ Q++GRA RP D G
Sbjct 495 VLVSTSTLAWGVNLPANCVIIKGT--FIGGLGVDRNINYLELTQIMGRAGRPQFDTSGTG 552
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
VL+ Y K E LPIES L +HL++ +NAE+VL T+ + DAV WL ++FLY
Sbjct 553 VLITEHKNLNDYIKMQTEQLPIESHLHRHLENALNAEIVLGTVVDEADAVTWLRYTFLYV 612
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLA-EKNELELEPLNLGLISAF 177
R+ KN YG++ ++ + + L ++V A +L++++ + + E +LG I+A
Sbjct 613 RMRKNALKYGIKSSNDGEIFNQLHKIVRDAAINLDRSKLIRYHEPSGEFASTDLGRIAAR 672
Query 178 YYVKVATIELF 188
YYV TI F
Sbjct 673 YYVDYETIYNF 683
> tpv:TP01_0582 RNA helicase
Length=1764
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTE--NGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V++A AWG+ + + +V+I T+ + Y DY D++QM+GRA R D Y
Sbjct 1299 VLIATSTLAWGVNLPAKIVIIKGTEFYDGRVKRYIDYSATDIIQMVGRAGRNIYDGEAYA 1358
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+ + K FYK F+F P P ES + + D +N+E+ ++ +K+ A+D+L+ +FLY+
Sbjct 1359 YVFTETRKVGFYKAFMFTPFPTESFFLEKINDCLNSEIATGSVTTKKGALDYLSRTFLYK 1418
Query 119 RLSKNPNYYG-------------------------LQGTSHQHLSDFLSELVESAVHSLE 153
RL NP YY L G L D +V +A+ SL
Sbjct 1419 RLKSNPKYYTQSPNPLYEDKGDVINDGNNSLNFVKLSGVDGTKLEDICEAIVNNAISSLV 1478
Query 154 QAQCLA---EKNELE------LEPLNLGLISAFYYVKVATIELF 188
+ C++ ++EL+ L P G+ ++ YYV T+ F
Sbjct 1479 KLGCVSLEYPEDELKIIEHGLLVPTLNGIFASQYYVNCKTVHEF 1522
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADV--LQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H V+I T F D I ++ Q++GRA RP D G
Sbjct 451 VLVCTSTLAWGVNLPAHSVIIKGT--FIGGVGVDRNINNLELNQIMGRAGRPQFDVEGKG 508
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+LL Y + E +PIESQL HL++ +NAE+ + +I + DA+ WL +++L+
Sbjct 509 ILLTDHKNLYSYVRMQTERVPIESQLHVHLENFLNAEIAIGSINNDTDALLWLQYTYLFV 568
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNEL-ELEPLNLGLISAF 177
R+ KNP +YG+ G L + E++++A +L +++ + ++ + +LG I+A
Sbjct 569 RMVKNPLFYGINGDDEDTLLKYRHEIIKNAAKNLNKSKLIRYSSKTGDFSSTDLGRIAAR 628
Query 178 YYVKVATIELF 188
YYV T F
Sbjct 629 YYVDYETTHNF 639
> hsa:164045 HFM1, FLJ36760, FLJ39011, MER3, MGC163397, RP11-539G11.1,
SEC63D1, Si-11, Si-11-6, helicase; HFM1, ATP-dependent
DNA helicase homolog (S. cerevisiae) (EC:3.6.4.12)
Length=1435
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A G+ + +HLVVI T + +E+Y D+LQM+GRA RP D V+
Sbjct 609 VLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVI 668
Query 61 LCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRL 120
+ S R+ Y + + +ES L +HL +H+NAE+VL TI AV+W+ + LY R
Sbjct 669 MTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRA 728
Query 121 SKNPNYYGL-QGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFYY 179
KNP++YG G + + L EL ++ L + + +P G + A+YY
Sbjct 729 LKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYY 788
Query 180 VKVATIELF 188
+ T++ F
Sbjct 789 ITFETVKKF 797
> dre:557052 hfm1, si:ch211-83f14.5; HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)
Length=1228
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A G+ M +HLVVI T + E+Y AD+LQM+GRA RP D V+
Sbjct 515 VLFTTSTLAMGVNMPAHLVVIKSTMHYVGGACEEYSEADLLQMIGRAGRPQFDTTATAVI 574
Query 61 LCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRL 120
+ ++ Y F+ IES L +L +H+NAE+VL TI A+DW+ +FLY R
Sbjct 575 MTRPQTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRA 634
Query 121 SKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELELEPLNLGLISAFYYV 180
KNP +Y EL ++SL + ++ ++P G + A Y V
Sbjct 635 LKNPKHY---------------ELCLKNLNSLASFNLITMDEDINIKPTETGKLMARYCV 679
Query 181 KVATIELFN 189
T++ F+
Sbjct 680 AFDTVKQFS 688
> cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helicase,
Pre-mRNA splicing helicase BRR2 2 (RNA helicase plus Sec63
domain)
Length=2184
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTEN--GYEDYPIADVLQMLGRATRPGIDKHGYV 58
+VVA AWG+ +H +I T+ F Y DYPI DVLQM+GR+ RP D H
Sbjct 1595 IVVATSTLAWGVNFPAHFAIIKGTEYFDAKLGQYIDYPITDVLQMVGRSGRPQYDSHSVA 1654
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLE-QHLQDHVNAEVVLKTIESKQDAVDWLTWSFLY 117
++ +K+ FYK+F+++ LP+ES L + NAEV +I+S DA+ +L+ SF +
Sbjct 1655 CIMTLEAKKPFYKRFLYDSLPLESCFGVSPLIEIFNAEVSSLSIKSIPDAICFLSNSFFF 1714
Query 118 RRLSKNPNYY 127
+R+ NP +Y
Sbjct 1715 KRVVINPAFY 1724
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 12/200 (6%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRF--TENGYEDYPIADVLQMLGRATRPGIDKHGYV 58
V++ AWG+ + + V+I T + + ++D I D+LQ+ GRA RP +K G
Sbjct 664 VLITTATLAWGVNLPARHVIIKGTNVYDSKKGSFKDLGILDILQIFGRAGRPQFEKLGSA 723
Query 59 VLLCPSSKREFY-KKFIFEPLPIESQL--EQHLQDHVNAEVVLKTIESKQDAVDWLTWSF 115
++ S K + Y KK F+ PIESQL E +L + +NAE+ +I + +DA WL ++F
Sbjct 724 YMITSSDKVQSYVKKLTFQA-PIESQLSNESNLCNLLNAEIARGSILNAKDASRWLKYTF 782
Query 116 LYRRLSKNPNYYGLQG---TSHQHLSDFLSELVESAVHSLEQAQCLAEK--NELELEPLN 170
L R+ K+P YG + + +L+ F + + L Q++ + NE E+ P +
Sbjct 783 LVTRVKKSPIAYGFKAEEIINDPNLAQFCYNNISKCLDLLYQSKLIRYNIINE-EVSPTH 841
Query 171 LGLISAFYYVKVATIELFNR 190
G +++ YY+ T +F +
Sbjct 842 YGRLASKYYIDFNTANIFRK 861
> cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the second
part of the RNA
Length=1204
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+V AWG+ + +H V+I T+ + E G + + D+LQM+GR RP D +G+
Sbjct 853 VLVTTATLAWGVNLPAHTVIIKGTQIYQPERGEWTELSPLDMLQMIGRGGRPQYDNNGHG 912
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
V++ +Y + + L IESQL L D +NAE+ L +++K+DA+DW+ +FLY
Sbjct 913 VVITDFDHLTYYLSLLNQQLNIESQLIPKLPDLINAEISLGNVQNKRDALDWIKKTFLYI 972
Query 119 RLSKNPNYYGLQGTSHQHLSDFLSELVESAVHSLEQAQCLAEKNELE 165
R+ +NP+ YGL S +LV +LE+ + LA KN +E
Sbjct 973 RIIRNPSLYGLDIDEIIDKSRQDKDLVAENKDALEEERDLAFKNAVE 1019
> ath:AT3G27730 RCK; RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent
helicase/ DNA helicase
Length=1133
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 4/190 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFT-ENG-YEDYPIADVLQMLGRATRPGIDKHGYV 58
V+ A G+ + +H VVI T+ F E G Y +Y + +LQM GRA RP D G V
Sbjct 363 VICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMV 422
Query 59 VLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYR 118
+++ Y+ + +ESQL L +H+ AE+V TI A++W+ S+LY
Sbjct 423 IIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYV 482
Query 119 RLSKNPNYYGL-QGTSHQHLSDFLSELVESAVHSLEQAQCL-AEKNELELEPLNLGLISA 176
R+ KNP Y + +G + L EL ++ L Q Q + + + L+P G +
Sbjct 483 RMKKNPENYAIKKGIPKDRVEKHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPGRLMT 542
Query 177 FYYVKVATIE 186
YY+K T++
Sbjct 543 KYYLKFETMK 552
> cpv:cgd5_2970 hypothetical protein
Length=622
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 13/134 (9%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYE------------DYPIADVLQMLGRAT 48
+++A E+ + + VV++DTK+ + + DY D+ QML R
Sbjct 483 IIIACEDMKNSITLKFDYVVVMDTKKIDYDDNKGSLINSKIRKTIDYSQFDIHQMLSRC- 541
Query 49 RPGIDKHGYVVLLCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAV 108
R +D + +LLC S+K+EFY+ I LP+ES ++ + D +N E+ LKTI++KQD +
Sbjct 542 RNQMDHYSNFILLCSSNKQEFYEYTINNSLPLESNIDFGIIDCLNTEIALKTIKTKQDTI 601
Query 109 DWLTWSFLYRRLSK 122
DW+TW+ YRR+SK
Sbjct 602 DWITWTLFYRRISK 615
> sce:YGL251C HFM1, MER3; Hfm1p (EC:3.6.1.-); K01529 [EC:3.6.1.-]
Length=1187
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 0/127 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
++ + A G+ + ++LV+I TK + + ++Y DVLQM+GRA RP + HG V+
Sbjct 447 ILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVI 506
Query 61 LCPSSKREFYKKFIFEPLPIESQLEQHLQDHVNAEVVLKTIESKQDAVDWLTWSFLYRRL 120
+ S ++ Y+ I +ES L +L +H+ AE L+T+ S + AV+WL +F Y R
Sbjct 507 MTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRF 566
Query 121 SKNPNYY 127
KNP Y
Sbjct 567 GKNPAAY 573
> dre:559653 skiv2l, fb70b07, wu:fb70b07; superkiller viralicidic
activity 2 (S. cerevisiae homolog)-like; K12599 antiviral
helicase SKI2 [EC:3.6.4.-]
Length=1230
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A G+ M + VV ++ G+ + + +QM GRA R G+D G V++
Sbjct 653 VLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVII 712
Query 61 LCPSS---KREFYKKFIFEPLPIESQL 84
LC + E + + +P + SQ
Sbjct 713 LCKAGVHDMGELHSMMLGKPTVLHSQF 739
> hsa:6499 SKIV2L, 170A, DDX13, HLP, SKI2, SKI2W, SKIV2; superkiller
viralicidic activity 2-like (S. cerevisiae); K12599 antiviral
helicase SKI2 [EC:3.6.4.-]
Length=1246
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A G+ M + VV ++ + + D + +QM GRA R G+D G V+L
Sbjct 658 VLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVIL 717
Query 61 LCPSSKRE---FYKKFIFEPLPIESQL 84
LC E ++ + +P ++SQ
Sbjct 718 LCKGRVPEMADLHRMMMGKPSQLQSQF 744
> mmu:108077 Skiv2l, 4930534J06Rik, AW214248, Ddx13, SKI, Ski2w;
superkiller viralicidic activity 2-like (S. cerevisiae);
K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1244
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A G+ M + VV ++ + + D + +QM GRA R G+D G V+L
Sbjct 655 VLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVIL 714
Query 61 LCPSSKRE---FYKKFIFEPLPIESQL 84
LC E ++ + +P ++SQ
Sbjct 715 LCKGRVPEMADLHRMMMGKPSQLQSQF 741
> dre:100331276 superkiller viralicidic activity 2-like; K12599
antiviral helicase SKI2 [EC:3.6.4.-]
Length=1235
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A G+ M + VV ++ + + D + +QM GRA R G+D G V+L
Sbjct 658 VLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVIL 717
Query 61 LCPSSKRE---FYKKFIFEPLPIESQLE 85
LC E ++ + +P ++SQ
Sbjct 718 LCKGRVPEMADLHRMMMGKPSQLQSQFR 745
> ath:AT1G59760 ATP-dependent RNA helicase, putative; K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=988
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 0/58 (0%)
Query 4 AAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVLL 61
A E + GL M + VV + ++F + + + +QM GRA R GIDK G +L+
Sbjct 415 ATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILM 472
> sce:YLR398C SKI2; Ski complex component and putative RNA helicase,
mediates 3'-5' RNA degradation by the cytoplasmic exosome;
null mutants have superkiller phenotype of increased viral
dsRNAs and are synthetic lethal with mutations in 5'-3'
mRNA decay (EC:3.6.1.-); K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1287
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A GL + + V+ ++ NG + + QM GRA R G+D G V++
Sbjct 718 VLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 777
Query 61 LC---PSSKREFYKKFIFEPLPIESQL 84
+ P S F + + P ++SQ
Sbjct 778 MAYNSPLSIATFKEVTMGVPTRLQSQF 804
> cel:W08D2.7 mtr-4; yeast MTR (mRNA TRansport) homolog family
member (mtr-4); K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1026
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E + GL M + VV ++F + + +QM GRA R G D G V+L
Sbjct 465 VLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVIL 524
Query 61 LCPSSKREFYKKFIFEPL--PIESQLEQHLQDHVNAEVVLKTIESKQDAVDWL 111
+ S+ K I + P+ SQ + +VL + + AV W+
Sbjct 525 MVDSAMSADDAKQIIKGATDPLNSQF------RLTYNMVLNLMRVEGMAVSWI 571
> ath:AT1G70070 EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent
helicase/ RNA helicase
Length=1171
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 0/61 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
VV A E A G+ M + VI + N + ++ QM GRA R GID+ GY VL
Sbjct 524 VVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVL 583
Query 61 L 61
+
Sbjct 584 V 584
> hsa:23517 SKIV2L2, Dob1, KIAA0052, MGC142069, Mtr4, fSAP118;
superkiller viralicidic activity 2-like 2 (S. cerevisiae) (EC:3.6.4.13);
K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1042
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 0/58 (0%)
Query 4 AAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVLL 61
A E A G+ M + V+ + ++F + + +QM GRA R G+D G V+L+
Sbjct 481 ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538
> tpv:TP02_0517 hypothetical protein; K12598 ATP-dependent RNA
helicase DOB1 [EC:3.6.4.13]
Length=1012
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ + E + GL M + VV K++ + +QM GRA R G+D G V++
Sbjct 447 VLFSTETFSMGLNMPAKTVVFTKMKKWDGREVRYISSGEYIQMAGRAGRRGLDTIGVVII 506
Query 61 LCPSS----KREFYKKFIFEPLPIES 82
+ S E K F+ +PL ++S
Sbjct 507 MLDKSDVLIDEEVKKIFLGKPLNLDS 532
> ath:AT3G46960 ATP binding / ATP-dependent helicase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1347
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ + E A G+ + VV ++F + + QM GRA R G+DK G VV+
Sbjct 741 VLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVV 800
Query 61 LC 62
+C
Sbjct 801 MC 802
> bbo:BBOV_II002350 18.m06191; helicase with zinc finger motif
protein; K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1113
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A G+ M + V+ + ++ QM GRA R G+D G V +
Sbjct 544 VLFATETFAMGVNMPARSVIFTSIHKHDGQKTRHLTASEYTQMAGRAGRRGLDSFGSVYI 603
Query 61 LCPSSKREF--YKKFIFE-PLPIESQ--------LEQHLQDHVN-AEVVLKTIE 102
CP + +FE +ES+ L+ H ++H+N E++LK+ +
Sbjct 604 FCPDDPPDLQDLTTMMFEKSTKLESKFRITYNMLLQVHSREHMNITEMMLKSFK 657
> tpv:TP04_0364 hypothetical protein; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1069
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A G+ M + VV + Y ++ QM GRA R G+D G V +
Sbjct 516 VLFATETFAMGVNMPARSVVFTSIYKHDGITYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 575
Query 61 LC---PSSKREFYKKFIFEPLPIESQ--------LEQHLQDHVN-AEVVLKTIESKQ 105
C P ++ I +ES+ L+ +DH+N E++LK+ ++
Sbjct 576 FCSDEPPDVQDLTNMMIERSTRLESRFRITYNMLLQIQSRDHMNITEMMLKSFRERE 632
> cpv:cgd8_2520 Mtr4p like SKI family SFII helicase ; K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=1280
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ + E + G+ M + V+ ++F Y + +QM GRA R G+D G +
Sbjct 442 VLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSGEFIQMSGRAGRRGLDDRGITIT 501
Query 61 LCPSSKREFYKKFIF--EPLPIESQL 84
+ + K + +PL I+SQ
Sbjct 502 MIDELADPWAIKSMLTGQPLRIDSQF 527
> mmu:72198 Skiv2l2, 2610528A15Rik, mKIAA0052; superkiller viralicidic
activity 2-like 2 (S. cerevisiae) (EC:3.6.4.13); K12598
ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1040
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 0/58 (0%)
Query 4 AAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVLL 61
A E A G+ M + V+ + +++ + + +QM GRA R G+D G V+L+
Sbjct 479 ATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 536
> dre:406795 skiv2l2, wu:fd11a05, zgc:63838; superkiller viralicidic
activity 2-like 2 (EC:3.6.4.13); K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=1034
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 0/58 (0%)
Query 4 AAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVLL 61
A E A G+ M + V+ ++F + + +QM GRA R G+D+ G V+ +
Sbjct 474 ATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFM 531
> bbo:BBOV_II005660 18.m06470; DSHCT (NUC185) domain containing
DEAD/DEAH box helicase family protein (EC:3.6.1.3); K12598
ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=986
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 0/75 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ + E + G+ M + VV + ++ + +QM GRA R G+D+HG V++
Sbjct 415 VLFSTETFSMGVNMPARCVVFTNLSKWDGQTNRLITSGEYIQMAGRAGRRGLDEHGLVII 474
Query 61 LCPSSKREFYKKFIF 75
+ + K IF
Sbjct 475 MMDRGIKPEEAKAIF 489
> pfa:PFF0100w ATP-dependent RNA Helicase, putative (EC:3.6.1.-);
K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1350
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPI--ADVLQMLGRATRPGIDKHGYV 58
V+ + E + G+ M + VV +F +G E I + +QM GRA R G+D G V
Sbjct 599 VLFSTETFSMGINMPAKTVVFTSLTKF--DGLEKRLITSGEYIQMAGRAGRRGLDDRGIV 656
Query 59 VLL--CPSSKREFYKKFIFEPLPIESQL 84
+++ P RE +K F+ E + SQ
Sbjct 657 IIMLDTPLHWREAHKLFVGEANRLVSQF 684
> tgo:TGME49_085660 DEAD/DEAH box helicase domain-containing protein
; K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1329
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 0/62 (0%)
Query 1 VVVAAEEAAWGLQMSSHLVVIVDTKRFTENGYEDYPIADVLQMLGRATRPGIDKHGYVVL 60
V+ A E A GL M + VV K+ ++ QM GRA R GID G+V +
Sbjct 826 VLFATETLAIGLNMPARSVVFSALKKHDGQRSRMLLASEYTQMAGRAGRRGIDTFGHVYI 885
Query 61 LC 62
C
Sbjct 886 FC 887
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5429324208
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40