bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_6284_orf1
Length=77
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 135 4e-32
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 120 2e-27
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 117 7e-27
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 112 2e-25
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 100 1e-21
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 98.6 4e-21
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 95.9 3e-20
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 95.5 4e-20
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 95.1 5e-20
dre:100334761 DNA-directed RNA polymerase II A-like 94.7 7e-20
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 88.6 4e-18
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 87.4 9e-18
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 71.6 6e-13
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 70.5 1e-12
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 69.3 3e-12
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 67.4 1e-11
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 64.7 8e-11
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 62.4 4e-10
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 59.3 3e-09
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 57.0 1e-08
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 57.0 1e-08
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 53.1 2e-07
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 50.8 1e-06
xla:379994 polr3a, MGC52746, rpc155; polymerase (RNA) III (DNA... 50.8 1e-06
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 49.7 2e-06
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 48.9 4e-06
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 48.9 4e-06
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 48.5 6e-06
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 48.1 6e-06
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 48.1 6e-06
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 47.0 1e-05
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 44.7 7e-05
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 44.7 8e-05
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 43.9 1e-04
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 40.0 0.002
ath:AT2G40030 NRPD1B; NRPD1B; DNA binding / DNA-directed RNA p... 33.9 0.12
ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DN... 33.9 0.14
cel:C41A3.1 hypothetical protein 32.3 0.37
hsa:7409 VAV1, VAV; vav 1 guanine nucleotide exchange factor; ... 29.6 2.4
hsa:84033 OBSCN, ARHGEF30, DKFZp666E245, FLJ14124, KIAA1556, K... 29.6 2.8
mmu:22324 Vav1, Vav, vav-T; vav 1 oncogene; K05730 vav oncogene 28.9 3.8
ath:AT4G18905 transducin family protein / WD-40 repeat family ... 28.9 4.3
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 135 bits (339), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/73 (80%), Positives = 67/73 (91%), Gaps = 0/73 (0%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
VT LNI +L++LVK GP +WPGAKYVIR+DG+RFDLRHAKKGGEV LEVGYRVERHM+D
Sbjct 386 FVTPLNIGQLRQLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRD 445
Query 65 GDYVLFNRQPSLH 77
GD+VLFNRQPSLH
Sbjct 446 GDFVLFNRQPSLH 458
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 59/72 (81%), Gaps = 0/72 (0%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQDG 65
V LN L++ V+ GP +WPGAKY+IR+DGTRFDLRH KK E+ LE GY+VERHMQDG
Sbjct 381 VNSLNYESLRKKVETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQLEYGYKVERHMQDG 440
Query 66 DYVLFNRQPSLH 77
DY+LFNRQPSLH
Sbjct 441 DYILFNRQPSLH 452
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 117 bits (294), Expect = 7e-27, Method: Composition-based stats.
Identities = 48/72 (66%), Positives = 60/72 (83%), Gaps = 0/72 (0%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQDG 65
VT LN+ L++ V+ GP EWPGAKY++R DG+RFDLRH K+ ++ LE GYRVERH+QDG
Sbjct 381 VTPLNLENLRKKVEMGPHEWPGAKYIVRADGSRFDLRHVKRASDLQLEYGYRVERHLQDG 440
Query 66 DYVLFNRQPSLH 77
DY+LFNRQPSLH
Sbjct 441 DYILFNRQPSLH 452
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/72 (65%), Positives = 60/72 (83%), Gaps = 0/72 (0%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQDG 65
VT LN + LK+LV++GP EWPGAKY+IR++GT++DLRH ++ E LE GY+VERHM D
Sbjct 413 VTPLNYDNLKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDE 472
Query 66 DYVLFNRQPSLH 77
DY+LFNRQPSLH
Sbjct 473 DYILFNRQPSLH 484
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 100 bits (248), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query 6 VTHLNINKLKELVKKGPLEWPG---AKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHM 62
VT NI +LKELV GP PG AKY+IR+DG R DLR+ KK + LE+GY+VERH+
Sbjct 392 VTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHL 451
Query 63 QDGDYVLFNRQPSLH 77
QDGD+VLFNRQPSLH
Sbjct 452 QDGDFVLFNRQPSLH 466
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 98.6 bits (244), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 58/73 (79%), Gaps = 0/73 (0%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
+VT NI++L +LV+ GP E PGAKYVIR+ G R DLR++K+ G++ L+ G++VERH+ D
Sbjct 379 VVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMD 438
Query 65 GDYVLFNRQPSLH 77
D VLFNRQPSLH
Sbjct 439 NDPVLFNRQPSLH 451
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 95.9 bits (237), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 59/73 (80%), Gaps = 0/73 (0%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
+VT NI++L+ELV++G ++PGAKY+IR++G R DLR K ++ L++GY+VERHM D
Sbjct 390 IVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCD 449
Query 65 GDYVLFNRQPSLH 77
GD ++FNRQP+LH
Sbjct 450 GDIIVFNRQPTLH 462
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 95.5 bits (236), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 58/73 (79%), Gaps = 0/73 (0%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
+VT NI++L+ELV++G ++PGAKY+IR++G R DLR K ++ L+ GY+VERHM D
Sbjct 393 IVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCD 452
Query 65 GDYVLFNRQPSLH 77
GD V+FNRQP+LH
Sbjct 453 GDIVIFNRQPTLH 465
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 95.1 bits (235), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 58/73 (79%), Gaps = 0/73 (0%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
+VT NI++L+ELV++G ++PGAKY+IR++G R DLR K ++ L+ GY+VERHM D
Sbjct 393 IVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCD 452
Query 65 GDYVLFNRQPSLH 77
GD V+FNRQP+LH
Sbjct 453 GDIVIFNRQPTLH 465
> dre:100334761 DNA-directed RNA polymerase II A-like
Length=780
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 59/73 (80%), Gaps = 0/73 (0%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
+VT NI++L+ELV++G ++PGAKY+IR++G R DLR K ++ L++GY+VERHM D
Sbjct 390 IVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCD 449
Query 65 GDYVLFNRQPSLH 77
GD ++FNRQP+LH
Sbjct 450 GDIIVFNRQPTLH 462
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 88.6 bits (218), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVA--LEVGYRVERHM 62
+VT NI +LKELV++GP EWPGA +I+EDGT+ DLR + L+ G++VERHM
Sbjct 380 VVTPYNIEELKELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNILQYGWKVERHM 439
Query 63 QDGDYVLFNRQPSLH 77
++ D VLFNRQPSLH
Sbjct 440 KNDDLVLFNRQPSLH 454
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 87.4 bits (215), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQD 64
+VT N++KL+ELV +G ++PGAK E+G R DLR+ + ++ L+ GYRVERHM+D
Sbjct 387 IVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKD 442
Query 65 GDYVLFNRQPSLH 77
GD ++FNRQP+LH
Sbjct 443 GDIIVFNRQPTLH 455
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 71.6 bits (174), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHA-KKGGEVALEVGYRVERHMQD 64
V +NI+ L+E V G WPGA YV + +G++ LR+A ++ LE+G VERHM+
Sbjct 392 VNAINIDSLREAVLNGHDIWPGACYVYKSNGSKSSLRYANRRVVSERLEIGDIVERHMKT 451
Query 65 GDYVLFNRQPSLH 77
GD VLFNRQPSLH
Sbjct 452 GDIVLFNRQPSLH 464
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVA--LEVGYRVERHMQ 63
V +NI L+ V KG +WPGA YV + DG++ LR+A + +VA L++G VERH+
Sbjct 470 VNRVNIEVLRAAVLKGCSDWPGACYVNKVDGSKCSLRYANRR-QVAENLQIGDVVERHLC 528
Query 64 DGDYVLFNRQPSLH 77
+GD VLFNRQPSLH
Sbjct 529 NGDVVLFNRQPSLH 542
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 69.3 bits (168), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAK-KGGEVALEVGYRVERHMQD 64
VT NI+ LK+ + G WPGA YV + DG++ LR A K L+VG VERH+ +
Sbjct 446 VTKYNIDVLKKAILNGVSVWPGASYVNKLDGSKCSLRFANPKHMSENLQVGDIVERHLWN 505
Query 65 GDYVLFNRQPSLH 77
GD V+FNRQPSLH
Sbjct 506 GDIVIFNRQPSLH 518
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVI-REDGTRFDLRHAKKGGEVA-LEVGYRVERHMQ 63
VT N +KL+EL+ GP PGA Y++ R + R +LR+ + L++G VERH++
Sbjct 408 VTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLE 467
Query 64 DGDYVLFNRQPSLH 77
DGD VLFNRQPSLH
Sbjct 468 DGDVVLFNRQPSLH 481
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 64.7 bits (156), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGT-RFDLRHAKKGGEVALEVGYRVERHMQD 64
V+ NI KL++ V+ GP ++PGA+ V DG+ R + +K L +G V+RH+Q+
Sbjct 397 VSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQE 456
Query 65 GDYVLFNRQPSLH 77
GD VLFNRQPSLH
Sbjct 457 GDVVLFNRQPSLH 469
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 62.4 bits (150), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAK-KGGEVALEVGYRVERHMQD 64
VT NI+ +K+ V G WPGA YV +++G + L++A K L VG V RH+ +
Sbjct 451 VTDSNISIMKKAVLNGVSIWPGATYVKKQNGGKCSLQYANPKYMSDNLTVGDVVLRHLWN 510
Query 65 GDYVLFNRQPSLH 77
GD VLFNRQPSLH
Sbjct 511 GDVVLFNRQPSLH 523
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query 5 LVTHLNINKLKELVKKGPLEWPGAKYVI-REDGTRFDLRHAKKGGEVA--LEVGYRVERH 61
+V NI K+++LV G PGA Y++ ++ G + L++ K+ E+A L +G +ERH
Sbjct 391 IVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRD-ELAKNLRMGDTIERH 449
Query 62 MQDGDYVLFNRQPSLH 77
+ D D VLFNRQPSLH
Sbjct 450 LDDNDVVLFNRQPSLH 465
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGG--EVALEVGYR--VERH 61
V NIN L++LV+ GP PGA + I++ T+ R K G ++A E+ Y VERH
Sbjct 396 VNKANINFLRKLVQNGPEVHPGANF-IQQRHTQMK-RFLKYGNREKMAQELKYGDIVERH 453
Query 62 MQDGDYVLFNRQPSLH 77
+ DGD VLFNRQPSLH
Sbjct 454 LIDGDVVLFNRQPSLH 469
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIRE--DGTRFDLRHAKKGGEVALEVGYRVERHMQ 63
V NIN L++LV+ GP PGA ++ + RF ++ L+ G VERH+
Sbjct 396 VNKANINFLRKLVRNGPDVHPGANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLI 455
Query 64 DGDYVLFNRQPSLH 77
DGD VLFNRQPSLH
Sbjct 456 DGDVVLFNRQPSLH 469
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVA----LEVGYR---- 57
VT N+N L++LV GP +PGAK + +G ++L VA L VG
Sbjct 545 VTKYNVNFLRKLVINGPKVYPGAKMLRDTNGKIYNLSALTYNERVAKAKLLLVGLSEGNA 604
Query 58 ---VERHMQDGDYVLFNRQPSLH 77
V RH+ DGD VL NRQP+LH
Sbjct 605 TKIVYRHILDGDVVLMNRQPTLH 627
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDL----RHAKKGGEVA---------- 51
V N+N++K L+++GP + PGA + + G + L K+ ++A
Sbjct 511 VNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTEN 570
Query 52 LEVGYRVERHMQDGDYVLFNRQPSLH 77
L +V RHM++GD ++ NRQPSLH
Sbjct 571 LRQTPKVLRHMKNGDMIMMNRQPSLH 596
> xla:379994 polr3a, MGC52746, rpc155; polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=489
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGG--EVALEV--GYRVERH 61
V N+ +++LV+ GP PGA + I++ T+ R K G ++A E+ G VERH
Sbjct 395 VNQANMQLMRKLVQNGPEIHPGANF-IQQRHTQMK-RFLKYGNREKIAQELRFGDIVERH 452
Query 62 MQDGDYVLFNRQPSLH 77
+ DGD VLFNRQPSLH
Sbjct 453 LIDGDIVLFNRQPSLH 468
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVAL------------- 52
VT NI +L++ V GP +WPGA + EDG+ L AL
Sbjct 511 VTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVST 570
Query 53 -EVGYRVERHMQDGDYVLFNRQPSLH 77
+ +V RH+++ D VL NRQP+LH
Sbjct 571 HTLNKKVYRHIKNRDVVLMNRQPTLH 596
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDL-------RHAK-KGGEVALEVGYR 57
VT N+N L++L+ GP +PGA + E G ++L R AK K + G +
Sbjct 577 VTSYNVNMLRKLLINGPRIYPGANFYRDEYGKLYNLGTLSINERKAKAKLLLTDISDGRQ 636
Query 58 ---VERHMQDGDYVLFNRQPSLH 77
V RH+ DGD VL NRQP+LH
Sbjct 637 PRVVYRHVLDGDVVLMNRQPTLH 659
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRH--AKKGGEVALEV--------- 54
VT N+ +L++ V GP PGA VI EDG+R L A + VA ++
Sbjct 479 VTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPK 538
Query 55 --GYRVE-RHMQDGDYVLFNRQPSLH 77
G +V RH+++GD +L NRQP+LH
Sbjct 539 PQGTKVVCRHVKNGDILLLNRQPTLH 564
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGGEVAL-------EVGYR- 57
VT N+ ++++ V GP PGA V+ EDG+R L + A+ G
Sbjct 466 VTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHR 525
Query 58 -----VERHMQDGDYVLFNRQPSLH 77
V RH+++GD +L NRQP+LH
Sbjct 526 IPMKIVNRHIKNGDVLLLNRQPTLH 550
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDL-------RHAKKGGEVALEVGYR- 57
VT N+ +L++ V GP PGA VI EDG+R L R A + G +
Sbjct 478 VTPWNVQELRKAVLNGPNVHPGASMVINEDGSRTILNSTDLSQRDAVAKQLLTPSTGTQT 537
Query 58 -----VERHMQDGDYVLFNRQPSLH 77
V RH+++GD +L NRQP+LH
Sbjct 538 LNAKIVCRHVKNGDVLLLNRQPTLH 562
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query 2 IQNLVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDLRHAKKGG----------EVA 51
I +T N +K+L++ GP +PGA +G F L H +
Sbjct 766 IDEYITQNNFTYIKKLIENGPNIYPGALSYRDSNGRVFKLSHKYEDRLKVIEKIEKLNFQ 825
Query 52 LEVGYRVERHMQDGDYVLFNRQPSLH 77
E Y + RH +DGD V+ NRQP+LH
Sbjct 826 TENSYILHRHARDGDVVIMNRQPTLH 851
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDL-------RHAKKGGEVALEVGYR- 57
VT N+ +L++ V GP PGA VI EDG+R L R A + G
Sbjct 472 VTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPK 531
Query 58 ------VERHMQDGDYVLFNRQPSLH 77
V RH+++GD +L NRQP+LH
Sbjct 532 PQGTKIVCRHVKNGDILLLNRQPTLH 557
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 25/101 (24%)
Query 2 IQNLVTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFDL-------RHAKKGGEVALEV 54
I VT N++ L E+V GP + PGA ++ + G F+L R AK +
Sbjct 665 IPEKVTPRNVHVLSEMVINGPHKHPGALAIMDDAGNLFNLEFLSPATRRAKAHQLLLSAS 724
Query 55 ------------------GYRVERHMQDGDYVLFNRQPSLH 77
+ V RH+ DGD VL NRQPSLH
Sbjct 725 ASASALSGSSADMPTTNGSFTVYRHVLDGDAVLMNRQPSLH 765
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query 38 RFDLRHAKKGGEVA-LEVGYRVERHMQDGDYVLFNRQPSLH 77
+ L++A K + L +G VERH+ DGD VLFNRQPSLH
Sbjct 541 KISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLH 581
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGTRFD 40
V NI+KLK L+K G +WPGA Y+I++ D
Sbjct 394 VNKYNIDKLKMLIKNGCNKWPGANYIIKKSKKGID 428
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 21/92 (22%)
Query 6 VTHLNINKLKELVKKGPLEWPGAKYVIREDGT--------------------RFDLRHAK 45
VT N+ KL+E + GP PGA + + T R
Sbjct 481 VTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELG 540
Query 46 KGGEVALEVGYRVERHMQDGDYVLFNRQPSLH 77
K ++ E G V RHM+DGD VL NRQP+LH
Sbjct 541 KTCDINFE-GKTVHRHMRDGDIVLVNRQPTLH 571
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query 7 THLNINKLKELVKKGPLEWPGAKYV----IREDGTRFDLRHAKKGGEVALEVGYR----- 57
TH N++ + LV+ GP +PGA + I D +R D K + L
Sbjct 520 TH-NVSLMANLVENGPNLYPGANKLLLGGILYDLSRLDQNQRKAKARLLLSSVLSASNPF 578
Query 58 -------VERHMQDGDYVLFNRQPSLH 77
V RH+ DGD VL NRQP+LH
Sbjct 579 LGNHHPIVYRHLIDGDIVLMNRQPTLH 605
> ath:AT2G40030 NRPD1B; NRPD1B; DNA binding / DNA-directed RNA
polymerase
Length=1976
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query 34 EDGTRFDLRHAKKGGEVALEVGYRVERHMQDGDYVLFNRQPSLH 77
+ T + LR KG L+ G V R + DGD V NR P+ H
Sbjct 377 QGSTTYSLRDGSKG-HTELKPGQVVHRRVMDGDVVFINRPPTTH 419
> ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A);
DNA binding / DNA-directed RNA polymerase
Length=1453
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query 43 HAKKGGEVA------LEVGYRVERHMQDGDYVLFNRQPSLH 77
H ++G + L+ G ++ R + DGD VL NR PS+H
Sbjct 376 HVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIH 416
> cel:C41A3.1 hypothetical protein
Length=7829
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query 30 YVIREDGTRFDLRHAKKGGEVALEVGYRVERHMQDGDYVLFNRQPS 75
Y + E T++D R A G + + R +QDGDY L N Q S
Sbjct 447 YTVNERKTKYDFRAAVFGKD-----NEEIARKLQDGDYSLTNLQES 487
> hsa:7409 VAV1, VAV; vav 1 guanine nucleotide exchange factor;
K05730 vav oncogene
Length=845
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query 1 PIQNLVTHLNINKLKELVKKGPLEWPGAKYVI--REDGTRFDLRHAKKGGEVALEVGYRV 58
P Q+L HL GP+E GA+ ++ R DGT + K E A+ + Y V
Sbjct 662 PPQDLSVHL--------WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNV 713
Query 59 E-RHMQ 63
E +H++
Sbjct 714 EVKHIK 719
> hsa:84033 OBSCN, ARHGEF30, DKFZp666E245, FLJ14124, KIAA1556,
KIAA1639, MGC120409, MGC120410, MGC120411, MGC120412, MGC138590,
UNC89; obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF (EC:2.7.11.1)
Length=7968
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
Query 16 ELVKKGPLEWP--------GAKYVIREDGTRFDLR 42
EL K P+EW G +Y +R+DGTR +L+
Sbjct 3824 ELSKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQ 3858
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query 16 ELVKKGPLEW--------PGAKYVIREDGTRFDLR 42
EL K P+EW G +Y++R++GTR +L+
Sbjct 3472 ELSKVAPVEWRKGPENLRDGDRYILRQEGTRCELQ 3506
> mmu:22324 Vav1, Vav, vav-T; vav 1 oncogene; K05730 vav oncogene
Length=821
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query 1 PIQNLVTHLNINKLKELVKKGPLEWPGAKYVI--REDGTRFDLRHAKKGGEVALEVGYRV 58
P Q+L HL GP+E GA+ ++ R DGT + K E A+ + Y V
Sbjct 638 PPQDLSVHL--------WYAGPMERAGAEGILTNRSDGTYLVRQRVKDTAEFAISIKYNV 689
Query 59 E-RHMQ 63
E +H++
Sbjct 690 EVKHIK 695
> ath:AT4G18905 transducin family protein / WD-40 repeat family
protein; K14791 periodic tryptophan protein 1
Length=494
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query 34 EDGT--RFDLRHAKKGGEVALEVGYRVERHMQD 64
EDGT FD+R A+ G + L Y ++ H QD
Sbjct 372 EDGTVKGFDIRAAQSGSDSDLNPTYTIQAHAQD 404
Lambda K H
0.319 0.141 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2072310352
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40