bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_5850_orf1
Length=118
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_040650 coatomer alpha subunit, putative (EC:2.7.11.... 137 7e-33
ath:AT2G21390 coatomer protein complex, subunit alpha, putativ... 97.8 6e-21
ath:AT1G62020 coatomer protein complex, subunit alpha, putativ... 96.3 2e-20
xla:446322 copa, MGC84477; coatomer protein complex, subunit a... 89.7 2e-18
hsa:1314 COPA, FLJ26320, HEP-COP; coatomer protein complex, su... 89.0 3e-18
mmu:12847 Copa, AU040324, xenin; coatomer protein complex subu... 89.0 4e-18
dre:260439 copa, cb281, fb13c12, wu:fb13c12; coatomer protein ... 86.7 2e-17
cel:Y71F9AL.17 hypothetical protein; K05236 coatomer protein c... 84.3 8e-17
sce:YDL145C COP1, RET1, SEC33, SOO1; Alpha subunit of COPI ves... 83.2 2e-16
bbo:BBOV_III009950 17.m07862; WD domain, G-beta repeat domain ... 55.8 3e-08
cpv:cgd8_860 coatomer protein complex subunit alpha 53.5 2e-07
pfa:PFF0330w coatomer alpha subunit, putative 52.8 2e-07
tpv:TP02_0162 coatomer subunit alpha; K05236 coatomer protein ... 37.7 0.008
tgo:TGME49_070670 hypothetical protein 29.6 2.4
ath:AT3G07970 QRT2; QRT2 (QUARTET 2); polygalacturonase 29.3 3.5
tgo:TGME49_086410 hypothetical protein 28.9 4.1
hsa:375307 C2orf62, MGC50811; chromosome 2 open reading frame 62 28.5
dre:550251 zcrb1, si:ch211-155a11.4, zgc:110711; zinc finger C... 28.1 7.3
> tgo:TGME49_040650 coatomer alpha subunit, putative (EC:2.7.11.7);
K05236 coatomer protein complex, subunit alpha (xenin)
Length=1300
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 87/116 (75%), Gaps = 0/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD + G F Y+TLSHVK+ + NGD+GI+ L+E+IYI V + Y+DR A +H +P+
Sbjct 590 WDEDNGAFVYSTLSHVKYLLLNGDRGIIHCLNEAIYIFKVQRGMYYYLDRCASVHVEPLN 649
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
C +YLFK+A RR + +VAL VR G LCGN+LI YLK+KGY EVALEFL+D++++F
Sbjct 650 CQEYLFKLALHRRQFDQVALCVRNGQLCGNALIAYLKKKGYPEVALEFLTDKRARF 705
> ath:AT2G21390 coatomer protein complex, subunit alpha, putative;
K05236 coatomer protein complex, subunit alpha (xenin)
Length=1218
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD + G F Y TL+H+K+C+ NGD GI+ +L IYI V+ + +DR + +
Sbjct 537 WD-DNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAITIN 595
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
+Y+FK+A R+ Y V +++ LCG ++I YL++KG+ EVAL F+ D + +F
Sbjct 596 ATEYIFKLALLRKKYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRF 651
> ath:AT1G62020 coatomer protein complex, subunit alpha, putative;
K05236 coatomer protein complex, subunit alpha (xenin)
Length=1216
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD + G F Y TL+H+K+C+ NGD GI+ +L IYI V+ + +DR + +
Sbjct 537 WD-DNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITIN 595
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
+Y+FK++ R+ Y V +++ LCG ++I YL++KG+ EVAL F+ D + +F
Sbjct 596 ATEYIFKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRF 651
> xla:446322 copa, MGC84477; coatomer protein complex, subunit
alpha; K05236 coatomer protein complex, subunit alpha (xenin)
Length=1224
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD E G F Y T +H+K+ +T GD GI+ +L IYI V + +DR + +
Sbjct 535 WD-ESGVFIYTTSNHIKYALTTGDHGIIRTLDLPIYITRVKGNNVYCLDRECRPRVLTID 593
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
++ FK+A R Y +V +VR L G S+I YL++KGY EVAL F+ D K++F
Sbjct 594 PTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRF 649
> hsa:1314 COPA, FLJ26320, HEP-COP; coatomer protein complex,
subunit alpha; K05236 coatomer protein complex, subunit alpha
(xenin)
Length=1233
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD E G F Y T +H+K+ +T GD GI+ +L IY+ V + +DR + +
Sbjct 544 WD-ESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTID 602
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
++ FK+A R Y +V +VR L G S+I YL++KGY EVAL F+ D K++F
Sbjct 603 PTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRF 658
> mmu:12847 Copa, AU040324, xenin; coatomer protein complex subunit
alpha; K05236 coatomer protein complex, subunit alpha
(xenin)
Length=1224
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD E G F Y T +H+K+ +T GD GI+ +L IY+ V + +DR + +
Sbjct 535 WD-ESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTID 593
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
++ FK+A R Y +V +VR L G S+I YL++KGY EVAL F+ D K++F
Sbjct 594 PTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRF 649
> dre:260439 copa, cb281, fb13c12, wu:fb13c12; coatomer protein
complex, subunit alpha; K05236 coatomer protein complex, subunit
alpha (xenin)
Length=1224
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query 8 FFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVACN----D 63
F Y T +H+K+ +T+GD GI+ +L IY+ V + +DR C+P N +
Sbjct 541 FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRE----CRPRVLNIDPTE 596
Query 64 YLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
Y FK+A R Y +V +VR L G S+I YL++KGY EVAL F+ D K++F
Sbjct 597 YRFKLALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRF 649
> cel:Y71F9AL.17 hypothetical protein; K05236 coatomer protein
complex, subunit alpha (xenin)
Length=1232
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVA 60
WD + F Y T +H+K+ + +GD GIV +L +YI+ + L ++R A P+
Sbjct 539 WDDD-SVFLYTTSNHIKYAINSGDCGIVRTLDLPLYILAIRGNVLYCLNRDATPVEVPID 597
Query 61 CNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
+DY FK+A + +V +VR L G S+IGYL++KGY E+AL F+ D K++F
Sbjct 598 NSDYKFKLALINKRIDEVVNMVRSANLVGQSIIGYLEKKGYPEIALHFVKDEKTRF 653
> sce:YDL145C COP1, RET1, SEC33, SOO1; Alpha subunit of COPI vesicle
coatomer complex, which surrounds transport vesicles
in the early secretory pathway; K05236 coatomer protein complex,
subunit alpha (xenin)
Length=1201
Score = 83.2 bits (204), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLY-MDRRAQLHCKPV 59
WD E G Y+TL+H+++ + NGD+GI+ +L +++YI V Q +L+Y ++R ++ +
Sbjct 539 WD-ETGVLIYSTLNHIRYSLLNGDRGIIKTLEKTLYITKV-QGKLVYCLNREGEIEILTI 596
Query 60 ACNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
+Y FK A +++ +V L++ L G ++I YL++ GY E+AL+F+ D +F
Sbjct 597 DPTEYRFKKALVNKNFPEVLRLIKDSNLVGQNIISYLQKSGYPEIALQFVQDPHIRF 653
> bbo:BBOV_III009950 17.m07862; WD domain, G-beta repeat domain
containing protein; K05236 coatomer protein complex, subunit
alpha (xenin)
Length=1266
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 0/108 (0%)
Query 4 ELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVACND 63
E YAT + + M NGD G++ S+ IYIV + L M R + + + ++
Sbjct 656 ENSAVIYATDERMYYIMVNGDCGVLQSIDAPIYIVRIKNTSLHVMKRDHRCYRIEINSDE 715
Query 64 YLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSD 111
+ FKVA + L+ G + GN+++ YL K Y +A ++D
Sbjct 716 FFFKVALYYKKVDTAKKLIEAGRIHGNAMVAYLINKNYPSLARMIITD 763
> cpv:cgd8_860 coatomer protein complex subunit alpha
Length=1382
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query 1 WDPELGGFFYATLSHVKFCMTN-GDKGIVCSLSESIYIVTV--AQQQLLYMDRRAQLHC- 56
W L F Y T H+K+ + N + GI+ ++ +++YI ++++L+ ++R +
Sbjct 621 WHETLPIFIYTTQGHIKYAIPNINESGIIQTIPDTLYIKHYEDSRKELITLNRFGSVQII 680
Query 57 KPVACNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSDRKSKF 116
+ + N+ LFK++ ++ KV + G L G S + YL + GY EVA++ + + KF
Sbjct 681 EKLNLNEALFKLSIINQESGKVLRYTKDGNLKGLSTLNYLTQHGYPEVAIQLVENPILKF 740
> pfa:PFF0330w coatomer alpha subunit, putative
Length=1512
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 35/142 (24%)
Query 8 FFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQLLYMDRRAQLHCKPVACND--YL 65
F Y TLSH+K+ + NG+KG++ + E++Y+ + L Y++R Q + K + ND YL
Sbjct 733 FIYNTLSHLKYILINGEKGLIKYMDETVYLFKIYNNHLYYINR--QENVKNILLNDTEYL 790
Query 66 FKVAPSRRD------YMK-------------------------VALLVRYGGLCGNSLIG 94
FK+ D Y+ V L + +LIG
Sbjct 791 FKMCLINNDEHMAYQYLNMNTSNKKKKNTMLNNNNNNNNNNNVVPLNEKKKLYFSYNLIG 850
Query 95 YLKEKGYSEVALEFLSDRKSKF 116
Y+K+KG++ +A++ +++ + F
Sbjct 851 YIKKKGFANLAVQMVNNNNTLF 872
> tpv:TP02_0162 coatomer subunit alpha; K05236 coatomer protein
complex, subunit alpha (xenin)
Length=1358
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query 1 WDPELGGFFYATLSHVKFCMTNGDKGIVCSLSESIYIVTVA----QQQLLYMDRRAQLHC 56
WD Y+T + + + + NG G++C+++ Y++ V+ +++LY+ R
Sbjct 673 WDHN-TAVIYSTYNQIHYLLINGSFGVLCTMASPTYLIKVSAVSEDKRVLYLINRQHRCF 731
Query 57 KPV-ACNDYLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEVALEFLSD 111
K V DYL K + + K LV G L G YL +A + L+D
Sbjct 732 KQVLDSPDYLLKYSLLVNNMEKANSLVDSGQLFGRFTCSYLINNCKYGLARKLLND 787
> tgo:TGME49_070670 hypothetical protein
Length=1320
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query 45 LLYMDRRAQLHCKPVACND----YLFKVAPSRRDYMKVALLVR 83
L D A HCKP + ++ Y+F + SRR + V LL R
Sbjct 644 FLGQDPTAPTHCKPFSLDELYYKYMFAFSESRRYFSMVILLSR 686
> ath:AT3G07970 QRT2; QRT2 (QUARTET 2); polygalacturonase
Length=439
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query 49 DRRAQLHCKPVACND--YLFKVAPSRRDYMKVALLVRYGGLCGNSLIGYLKEKGYSEV-A 105
D +A + AC+ ++ VAP RDYM A V + G C +SLI + K Y + A
Sbjct 85 DSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKA--VTFSGPCKSSLIIF---KIYGRIEA 139
Query 106 LEFLSDRKSK 115
E SD K +
Sbjct 140 WENPSDYKER 149
> tgo:TGME49_086410 hypothetical protein
Length=1759
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 24 DKGIVCSLSESIYIVTVAQQQLLYMDRRAQLH 55
D VC L E+++ + VA +QLL+M R H
Sbjct 1179 DCAAVCDLLEAVHTLGVADEQLLHMTMRRLSH 1210
> hsa:375307 C2orf62, MGC50811; chromosome 2 open reading frame
62
Length=387
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query 87 LCGNSLIGYLKEKGYSEVALEFLSDRKSKFL 117
LCGNSL+GYL EK LE + F+
Sbjct 100 LCGNSLLGYLSEK------LELMEQHSQDFI 124
> dre:550251 zcrb1, si:ch211-155a11.4, zgc:110711; zinc finger
CCHC-type and RNA binding motif 1; K13154 U11/U12 small nuclear
ribonucleoprotein 31 kDa protein
Length=145
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query 13 LSHVKFCMTNGDKGIVCSLSESIYIVTVAQQQ----------LLYMDRRAQLHCKPVACN 62
+S++ F +TN D +CS + VT+ + + +L++DR + +C N
Sbjct 14 VSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRSLNN 73
Query 63 DYLF 66
LF
Sbjct 74 KQLF 77
Lambda K H
0.326 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2027872200
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40