bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_4933_orf2
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_069200 crooked neck-like protein 1, putative ; K128... 282 4e-76
ath:AT5G41770 crooked neck protein, putative / cell cycle prot... 213 3e-55
cel:M03F8.3 hypothetical protein; K12869 crooked neck 207 1e-53
hsa:51340 CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3; crooked... 205 5e-53
ath:AT5G45990 crooked neck protein, putative / cell cycle prot... 205 6e-53
dre:393920 crnkl1, MGC55327, zgc:55327; crooked neck pre-mRNA ... 202 3e-52
mmu:66877 Crnkl1, 1200013P10Rik, 5730590A01Rik, C80326, crn; C... 202 6e-52
pfa:PFD0180c CGI-201 protein, short form; K12869 crooked neck 198 7e-51
ath:AT3G13210 crooked neck protein, putative / cell cycle prot... 196 3e-50
bbo:BBOV_III004750 17.m07426; tetratricopeptide repeat domain ... 192 5e-49
tpv:TP02_0476 crooked neck protein; K12869 crooked neck 165 7e-41
sce:YLR117C CLF1, NTC77, SYF3; Clf1p; K12869 crooked neck 109 6e-24
cpv:cgd7_3690 crooked neck protein HAT repeats ; K12869 crooke... 108 1e-23
ath:AT3G51110 crooked neck protein, putative / cell cycle prot... 72.8 5e-13
dre:323855 c20orf14, fc12b02, prpf6, wu:fa05f07, wu:fc12b02, z... 50.1 4e-06
ath:AT4G03430 EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing fa... 49.3 6e-06
xla:447198 prpf6, MGC80263; PRP6 pre-mRNA processing factor 6 ... 48.9 1e-05
mmu:68879 Prpf6, 1190003A07Rik, 2610031L17Rik, ANT-1, MGC11655... 48.5 1e-05
ath:AT3G11964 RNA binding; K14792 rRNA biogenesis protein RRP5 45.4 9e-05
dre:387600 xab2, MGC198247, zgc:63498, zgc:63949; XPA binding ... 44.7 2e-04
xla:779090 pdcd11, alg-4, alg4, nfbp, rrp5; programmed cell de... 44.7 2e-04
hsa:22984 PDCD11, ALG-4, ALG4, KIAA0185, NFBP, RRP5; programme... 44.3 2e-04
mmu:18572 Pdcd11, 1110021I22Rik, ALG-4, Pdcd7, mKIAA0185; prog... 43.5 4e-04
tpv:TP04_0906 hypothetical protein 43.1 5e-04
cel:C16A3.3 let-716; LEThal family member (let-716); K14792 rR... 42.4 8e-04
bbo:BBOV_III009870 17.m07855; hypothetical protein 42.0 0.001
hsa:653889 pre-mRNA-processing factor 6-like 42.0 0.001
dre:368864 prpf39, fa10d07, si:dz261o22.3, wu:fa10d07; PRP39 p... 41.6 0.002
hsa:24148 PRPF6, ANT-1, C20orf14, Prp6, TOM, U5-102K, hPrp6; P... 41.2 0.002
ath:AT3G17040 HCF107; HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107... 40.4 0.003
sce:YBR055C PRP6, RNA6, TSM7269; Prp6p; K12855 pre-mRNA-proces... 40.4 0.003
dre:794079 pdcd11, MGC162501, cb680, im:7148359, sb:cb680, wu:... 39.3 0.008
mmu:67439 Xab2, 0610041O14Rik, AV025587; XPA binding protein 2... 38.9 0.010
mmu:328110 Prpf39, FLJ11128, MGC37077, Srcs1; PRP39 pre-mRNA p... 38.5 0.011
tpv:TP01_0797 hypothetical protein; K12855 pre-mRNA-processing... 38.5 0.012
hsa:56949 XAB2, DKFZp762C1015, HCNP, HCRN, NTC90, SYF1; XPA bi... 38.5 0.013
dre:100334796 Pre-mRNA-processing factor 39-like 38.1 0.018
hsa:55015 PRPF39, FLJ11128, FLJ20666, FLJ45460, MGC149842, MGC... 37.7 0.019
cpv:cgd5_920 Pre-mRNA splicing factor Pro1/Prp6. HAT repeat pr... 37.4 0.024
ath:AT5G28740 transcription-coupled DNA repair protein-related... 37.4 0.027
pfa:PF11_0108 U5 snRNP-associated protein, putative; K12855 pr... 37.0 0.032
bbo:BBOV_IV000660 21.m02991; XBA-binding protein 2; K12867 pre... 37.0 0.032
xla:100036801 xab2; XPA binding protein 2; K12867 pre-mRNA-spl... 37.0 0.033
pfa:PFL1735c RNA-processing protein, putative; K12867 pre-mRNA... 36.6 0.052
bbo:BBOV_IV009720 23.m06014; u5 snRNP-associated subunit, puta... 36.2 0.057
cpv:cgd7_970 Syf1p. protein with 8 HAT domains ; K12867 pre-mR... 36.2 0.060
sce:YMR229C RRP5; RNA binding protein with preference for sing... 36.2 0.064
cel:C50F2.3 hypothetical protein; K12867 pre-mRNA-splicing fac... 36.2 0.069
bbo:BBOV_IV005070 23.m05737; hypothetical protein; K14792 rRNA... 35.8 0.091
xla:734636 prpf39.1, MGC115228, prpf39; PRP39 pre-mRNA process... 35.4 0.100
> tgo:TGME49_069200 crooked neck-like protein 1, putative ; K12869
crooked neck
Length=794
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 130/177 (73%), Positives = 157/177 (88%), Gaps = 0/177 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
Y+YIWISYALFEELQAKD++RCR VY K LEV+PHK FSFAK+W+L+ +FE+RQ +L++A
Sbjct 496 YVYIWISYALFEELQAKDVERCRQVYVKMLEVIPHKKFSFAKIWSLYASFEVRQRDLDKA 555
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R IFG AI +CGK KIF AYAQLELRLG IDRCR+I+AKFIE +P NP+AWI MI+LEVL
Sbjct 556 RLIFGRAIAECGKPKIFVAYAQLELRLGCIDRCRKIYAKFIELHPFNPRAWIAMIDLEVL 615
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
AEE RARA+CE+A+ ME+M+ PEL+WKAYIDMEV WGA+DRAR+LYERLL+KTQHV
Sbjct 616 AEEQARARALCELAIGMEEMDTPELLWKAYIDMEVGWGAVDRARSLYERLLEKTQHV 672
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query 23 RSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQ 82
R+V+E+ +E P K W L++ FE R L+RARK+F + ++ F + +
Sbjct 293 RNVFERWMEWNPSD-----KGWMLYIHFEERCKELDRARKVFERYLSNRPSQESFLRFCK 347
Query 83 LELRLGNIDRCRQIHAKFIETYP---LNPKAWIQMIELEVLAEETERARAICEIAVSMEQ 139
E R I R R K IE P L+ +++ + E ETERA+ I + A+
Sbjct 348 FEERHRQIPRARAGFEKAIELLPEDMLDEHFFLKFAQFEERQRETERAKVIYQQALEQLP 407
Query 140 MEMPELIWKAYIDMEVNWG 158
+L+++ Y+ + +G
Sbjct 408 KGESDLLYEKYVTFQKQFG 426
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
++ + FEE + + + R R+ +EKA+E++P + + F FE RQ ERA+ I+
Sbjct 342 FLRFCKFEE-RHRQIPRARAGFEKAIELLPEDMLD-EHFFLKFAQFEERQRETERAKVIY 399
Query 65 GAAIGKCGKEK---IFQAYAQLELRLGNIDRCRQ--------IHAKFIETYPLNPKAWIQ 113
A+ + K + +++ Y + + G+ + ++ + + +PLN WI
Sbjct 400 QQALEQLPKGESDLLYEKYVTFQKQFGDKEGIEDTVLSKRVFVYEEELHGHPLNYDCWID 459
Query 114 MIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG--------ALDRARA 165
I LE + ++ R + E A++ + + WK Y+ + +++ ++R R
Sbjct 460 YIRLEESRGDIDKIRNVYERALANVPPVLEKRFWKRYVYIWISYALFEELQAKDVERCRQ 519
Query 166 LYERLLDKTQH 176
+Y ++L+ H
Sbjct 520 VYVKMLEVIPH 530
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
W+ Y FEE + K++DR R V+E+ L P + SF + F FE R + RAR F
Sbjct 309 WMLYIHFEE-RCKELDRARKVFERYLSNRPSQE-SFLR----FCKFEERHRQIPRARAGF 362
Query 65 GAAIGKCGK----EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWI-------- 112
AI + E F +AQ E R +R + I+ + +E P +
Sbjct 363 EKAIELLPEDMLDEHFFLKFAQFEERQRETERAKVIYQQALEQLPKGESDLLYEKYVTFQ 422
Query 113 -QMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLL 171
Q + E + E+T ++ + + + W YI +E + G +D+ R +YER L
Sbjct 423 KQFGDKEGI-EDTVLSKRVFVYEEELHGHPLNYDCWIDYIRLEESRGDIDKIRNVYERAL 481
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 33/116 (28%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVP----------------------------- 34
I+++YA E L+ +DRCR +Y K +E+ P
Sbjct 571 IFVAYAQLE-LRLGCIDRCRKIYAKFIELHPFNPRAWIAMIDLEVLAEEQARARALCELA 629
Query 35 ---HKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRL 87
++ + LW ++ E+ ++RAR ++ + K K+F+++A E R+
Sbjct 630 IGMEEMDTPELLWKAYIDMEVGWGAVDRARSLYERLLEKTQHVKVFKSFADFEWRI 685
> ath:AT5G41770 crooked neck protein, putative / cell cycle protein,
putative; K12869 crooked neck
Length=705
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 136/176 (77%), Gaps = 0/176 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+YALFEE++ +D++R R VY + L+++PH FSFAK+W L FEIRQLNL A
Sbjct 383 YIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGA 442
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R+I G AIGK K+KIF+ Y ++EL+LGN+DRCR+++ +++E P N AW + ELE
Sbjct 443 RQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERS 502
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQH 176
ETERARAI E+A+S ++MPEL+WKAYID E++ G L+R RALYERLLD+T+H
Sbjct 503 LVETERARAIFELAISQPALDMPELLWKAYIDFEISEGELERTRALYERLLDRTKH 558
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +W+ YA +EE Q KD R RSV+E+A+E + LW + FE++ + AR
Sbjct 92 IQVWVKYAQWEESQ-KDYARARSVWERAIE----GDYRNHTLWLKYAEFEMKNKFVNSAR 146
Query 62 KIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
++ A+ + ++++ Y +E LGNI RQI ++++ P + + W+ I+ E+
Sbjct 147 NVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSP-DQQGWLSFIKFELR 205
Query 121 AEETERARAICEIAVSMEQMEMPEL-IWKAYIDMEVNWGALDRARALYERLLDK 173
E ERAR I E V + P++ + Y E+ G + R R++YER +K
Sbjct 206 YNEIERARTIYERFV----LCHPKVSAYIRYAKFEMKGGEVARCRSVYERATEK 255
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W Y EE+ ++ R ++E+ ++ P + + W F+ FE+R +ERAR I
Sbjct 162 LWYKYIHMEEILG-NIAGARQIFERWMDWSPDQ-----QGWLSFIKFELRYNEIERARTI 215
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKA---WIQMIELEVL 120
+ + K + YA+ E++ G + RCR ++ + E + +A ++ E E
Sbjct 216 YERFVLCHPKVSAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEER 275
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG 158
+E ERAR I + A+ E +++ ++ E +G
Sbjct 276 CKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYG 313
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAF---EIRQLNLE 58
+ +I YA FE ++ ++ RCRSVYE+A E KL + LFVAF E R +E
Sbjct 226 VSAYIRYAKFE-MKGGEVARCRSVYERATE----KLADDEEAEILFVAFAEFEERCKEVE 280
Query 59 RARKIFGAA---IGKCGKEKIFQAYAQLELRLGN--------IDRCRQIHAKFIETYPLN 107
RAR I+ A I K E +++ + E + G+ + + R + + P N
Sbjct 281 RARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSN 340
Query 108 PKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG--------A 159
+W + LE +R R I E A++ + W+ YI + +N+
Sbjct 341 YDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETED 400
Query 160 LDRARALYERLLDKTQH 176
++R R +Y L H
Sbjct 401 IERTRDVYRECLKLIPH 417
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 32/104 (30%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAK------------------------------ 42
ELQ +MDRCR +YE+ LE P ++++K
Sbjct 466 ELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMP 525
Query 43 --LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLE 84
LW ++ FEI + LER R ++ + + K++ ++A+ E
Sbjct 526 ELLWKAYIDFEISEGELERTRALYERLLDRTKHYKVWVSFAKFE 569
> cel:M03F8.3 hypothetical protein; K12869 crooked neck
Length=747
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 131/177 (74%), Gaps = 0/177 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+YAL+EEL AKD DR R VY+ ++++PHK F+FAK+W +F FEIRQL+L A
Sbjct 382 YIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAA 441
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
RKI G AIGKC K+K+F+AY LEL+L DRCR+++ KF+E+ P + + WI+ ELE L
Sbjct 442 RKIMGVAIGKCPKDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETL 501
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
+T+R+RA+ IAV ++MPEL+WKAYID E+ ++AR LYE LL +T H+
Sbjct 502 LGDTDRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEEHEKARDLYETLLQRTNHI 558
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 6/172 (3%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I IW+ YA E ++ K ++ R+V+++A+ ++P + + W + E N+ AR
Sbjct 120 ISIWLQYAEME-MRCKQINHARNVFDRAITIMPRAM----QFWLKYSYMEEVIENIPGAR 174
Query 62 KIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLA 121
+IF I E+ +Q Y ELR IDR R ++ +F+ + +N + WI+ + E
Sbjct 175 QIFERWIEWEPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERN 234
Query 122 EETERARAICEIAVS-MEQMEMPELIWKAYIDMEVNWGALDRARALYERLLD 172
ARA E A+ + ++ E + A+ E +RAR +++ LD
Sbjct 235 GYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLD 286
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
WI Y +EE ++ R RSV+E+AL+ V H+ S +W + E+R + AR +F
Sbjct 89 WIKYGKWEE-SIGEIQRARSVFERALD-VDHRSIS---IWLQYAEMEMRCKQINHARNVF 143
Query 65 GAAIGKCGKEKIF-QAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEE 123
AI + F Y+ +E + NI RQI ++IE P +AW I E+ +E
Sbjct 144 DRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPE-QAWQTYINFELRYKE 202
Query 124 TERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLD 172
+RAR++ + + + + + W Y E G + ARA YE+ ++
Sbjct 203 IDRARSVYQRFLHVHGINVQN--WIKYAKFEERNGYIGNARAAYEKAME 249
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 32/115 (27%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAK------------------------------ 42
ELQ ++ DRCR +YEK LE P ++ K
Sbjct 465 ELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMP 524
Query 43 --LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQ 95
LW ++ FEI E+AR ++ + + K++ + A+ E +GN + R+
Sbjct 525 ELLWKAYIDFEIACEEHEKARDLYETLLQRTNHIKVWISMAEFEQTIGNFEGARK 579
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W +Y FE + ++ ++ R +YE L+ H K+W FE N E ARK
Sbjct 527 LWKAYIDFE-IACEEHEKARDLYETLLQRTNH-----IKVWISMAEFEQTIGNFEGARKA 580
Query 64 F---GAAIGKCGKEK---IFQAYAQLELRLGNIDRCRQIHA 98
F ++ KE+ + +A+ + E + G+ + +++
Sbjct 581 FERANQSLENAEKEERLMLLEAWKECETKSGDQEALKRVET 621
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query 94 RQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDM 153
R+ + +E P PK ++ + + L E + R E + +M++ W Y
Sbjct 40 REAKERELELIPPAPKT--KITDPDELKEYQRKKRKEFEDGIRKNRMQLAN--WIKYGKW 95
Query 154 EVNWGALDRARALYERLLD 172
E + G + RAR+++ER LD
Sbjct 96 EESIGEIQRARSVFERALD 114
> hsa:51340 CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3; crooked
neck pre-mRNA splicing factor-like 1 (Drosophila); K12869
crooked neck
Length=848
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 131/177 (74%), Gaps = 0/177 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+YAL+EEL+AKD +R R VY+ +LE++PHK F+FAK+W L+ FEIRQ NL A
Sbjct 533 YIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLA 592
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R+ G +IGKC K K+F+ Y +LEL+L DRCR+++ KF+E P N +WI+ ELE +
Sbjct 593 RRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETI 652
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
+ +RARAI E+A+S +++MPE++WK+YID E+ +R R LY RLL +TQHV
Sbjct 653 LGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHV 709
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I WI YA +EE K++ R RS+YE+AL+V + LW + E++ + AR
Sbjct 242 ISNWIKYAQWEE-SLKEIQRARSIYERALDVD----YRNITLWLKYAEMEMKNRQVNHAR 296
Query 62 KIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
I+ AI + + + Y +E LGN+ RQ+ +++E P +AW I E+
Sbjct 297 NIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELR 355
Query 121 AEETERARAICEIAVSMEQMEMPEL-IWKAYIDMEVNWGALDRARALYERLLD 172
+E +RAR I E V + P++ W Y E AR +YER ++
Sbjct 356 YKEVDRARTIYERFV----LVHPDVKNWIKYARFEEKHAYFAHARKVYERAVE 404
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 7/179 (3%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +W+ YA E ++ + ++ R+++++A+ +P + W + E N+ AR
Sbjct 276 ITLWLKYAEME-MKNRQVNHARNIWDRAITTLPR----VNQFWYKYTYMEEMLGNVAGAR 330
Query 62 KIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLA 121
++F + +E+ + +Y ELR +DR R I+ +F+ +P + K WI+ E
Sbjct 331 QVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKH 389
Query 122 EETERARAICEIAVSMEQME-MPELIWKAYIDMEVNWGALDRARALYERLLDKTQHVNA 179
AR + E AV E M E ++ A+ E N +R R +Y+ LD+ +A
Sbjct 390 AYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDA 448
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
WI +A E + D+DR R++YE L + +L LW ++ FEI Q ER R ++
Sbjct 643 WIKFAELETILG-DIDRARAIYE--LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLY 699
Query 65 GAAIGKCGKEKIFQAYAQLEL---RLGNIDRCRQIHAKFIET 103
+ + K++ ++AQ EL + G++ +CRQI+ + +T
Sbjct 700 RRLLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKT 741
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query 1 YIYIWISYALFEELQAKD--MDRCRSVYEKA 29
++ +WIS+A FE K+ + +CR +YE+A
Sbjct 708 HVKVWISFAQFELSSGKEGSLTKCRQIYEEA 738
> ath:AT5G45990 crooked neck protein, putative / cell cycle protein,
putative
Length=673
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 131/176 (74%), Gaps = 0/176 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+YAL+EE++ KD++R R VY + L+++PH FSFAK+W L +EIRQLNL A
Sbjct 370 YIYLWINYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGA 429
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R+I G AIGK K KIF+ Y ++EL+L NIDRCR+++ +F+E P N AW E E+
Sbjct 430 RQILGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEIS 489
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQH 176
ETERARAI E+A+S ++MPEL+WK YID E++ G ++ RALYERLLD+T+H
Sbjct 490 LAETERARAIFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYERLLDRTKH 545
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +W+ YA +EE Q D R RSV+E+ALE + LW + FE++ + AR
Sbjct 78 IQVWVKYAKWEESQM-DYARARSVWERALE----GEYRNHTLWVKYAEFEMKNKFVNNAR 132
Query 62 KIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
++ ++ + +++++ Y +E +LGN+ RQI +++ P + KAW+ I+ E+
Sbjct 133 NVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSP-DQKAWLCFIKFELR 191
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDK 173
E ERAR+I E V + ++ I A +M+ G + AR +YER +DK
Sbjct 192 YNEIERARSIYERFV-LCHPKVSAFIRYAKFEMKRG-GQVKLAREVYERAVDK 242
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+ YA FE ++ K ++ R+V+++++ ++P +LW ++ E + N+ AR+I
Sbjct 114 LWVKYAEFE-MKNKFVNNARNVWDRSVTLLPR----VDQLWEKYIYMEEKLGNVTGARQI 168
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEV-LAE 122
F + +K + + + ELR I+R R I+ +F+ +P A+I+ + E+
Sbjct 169 FERWMNWSPDQKAWLCFIKFELRYNEIERARSIYERFVLCHP-KVSAFIRYAKFEMKRGG 227
Query 123 ETERARAICEIAVS-MEQMEMPELIWKAYIDMEVNWGALDRARALYERLLD 172
+ + AR + E AV + E E+++ ++ + E ++RAR +Y+ LD
Sbjct 228 QVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALD 278
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query 6 ISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFG 65
I YA FE + + R VYE+A++ + + + L+ F FE R +ERAR I+
Sbjct 216 IRYAKFEMKRGGQVKLAREVYERAVDKLANDEEA-EILFVSFAEFEERCKEVERARFIYK 274
Query 66 AA---IGKCGKEKIFQAYAQLELRLGN--------IDRCRQIHAKFIETYPLNPKAWIQM 114
A I K E++++ + E + G+ + + R + + PLN +W
Sbjct 275 FALDHIRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDY 334
Query 115 IELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG--------ALDRARAL 166
+ LE +R R I E A++ + W+ YI + +N+ ++R R +
Sbjct 335 VRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTRDV 394
Query 167 YERLLDKTQHV 177
Y L H
Sbjct 395 YRECLKLIPHT 405
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query 3 YIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARK 62
Y W +YA FE + + +R R+++E A+ + LW ++ FEI + E+ R
Sbjct 478 YAWRNYAEFE-ISLAETERARAIFELAISQPALDMPEL--LWKTYIDFEISEGEFEKTRA 534
Query 63 IFGAAIGKCGKEKIFQAYAQLE 84
++ + + K++ ++A+ E
Sbjct 535 LYERLLDRTKHCKVWISFAKFE 556
> dre:393920 crnkl1, MGC55327, zgc:55327; crooked neck pre-mRNA
splicing factor-like 1 (Drosophila); K12869 crooked neck
Length=753
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 129/177 (72%), Gaps = 0/177 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+YAL+EEL+ KD +R R VY+ LE++PHK F+FAK+W L+ FEIRQ NL+ A
Sbjct 371 YIYLWINYALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNA 430
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R+ G AIGKC K K+F+ Y +LEL+L DRCR+++ K++E P N WI+ ELE +
Sbjct 431 RRGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETI 490
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
+T+R+RAI E+A+ +++MPE++WK+YID E+ D R LY+RLL +TQHV
Sbjct 491 LGDTDRSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQHV 547
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I WI YA +EE +++ R RS+YE+AL+ V H+ + LW + E++ + AR
Sbjct 80 ISNWIKYAQWEE-SLQEVQRSRSIYERALD-VDHRNIT---LWLKYAEMEMKNRQVNHAR 134
Query 62 KIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
I+ AI + + + Y +E LGNI CRQ+ +++E P +AW I E+
Sbjct 135 NIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEP-EEQAWHSYINFELR 193
Query 121 AEETERARAICEIAVSMEQMEMPELI-WKAYIDMEVNWGALDRARALYERLLD 172
+E ++AR+I E V M PE+ W Y E G + R R ++ER ++
Sbjct 194 YKEVDKARSIYENFV----MVHPEVKNWIKYAHFEEKHGYVARGRKVFERAVE 242
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +W+ YA E ++ + ++ R+++++A+ ++P + W + E N+ R
Sbjct 114 ITLWLKYAEME-MKNRQVNHARNIWDRAITILPR----VNQFWYKYTYMEEMLGNIAGCR 168
Query 62 KIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLA 121
++F + +E+ + +Y ELR +D+ R I+ F+ +P K WI+ E
Sbjct 169 QVFERWMEWEPEEQAWHSYINFELRYKEVDKARSIYENFVMVHP-EVKNWIKYAHFEEKH 227
Query 122 EETERARAICEIAVS-MEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDK 173
R R + E AV + ++ E ++ A+ E +R R +Y+ LD+
Sbjct 228 GYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDR 280
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 35/120 (29%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAK------------------------------ 42
ELQ ++ DRCR +YEK LE P ++ K
Sbjct 454 ELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMP 513
Query 43 --LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRLGNID---RCRQIH 97
LW ++ FEI Q + R ++ + + K++ +YAQ EL + D RCRQ++
Sbjct 514 EVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQHVKVWISYAQFELSIDTEDRVQRCRQVY 573
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query 111 WIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERL 170
WI+ + E +E +R+R+I E A+ ++ + +W Y +ME+ ++ AR +++R
Sbjct 83 WIKYAQWEESLQEVQRSRSIYERALDVDHRNI--TLWLKYAEMEMKNRQVNHARNIWDRA 140
Query 171 LDKTQHVN 178
+ VN
Sbjct 141 ITILPRVN 148
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query 1 YIYIWISYALFE-ELQAKD-MDRCRSVYEKA 29
++ +WISYA FE + +D + RCR VYE+A
Sbjct 546 HVKVWISYAQFELSIDTEDRVQRCRQVYEEA 576
> mmu:66877 Crnkl1, 1200013P10Rik, 5730590A01Rik, C80326, crn;
Crn, crooked neck-like 1 (Drosophila); K12869 crooked neck
Length=690
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 130/177 (73%), Gaps = 0/177 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+W++YAL+EEL+AKD +R R VY+ +LE++PHK F+FAK+W + FEIRQ NL A
Sbjct 372 YIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFA 431
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R+ G +IGKC K K+F+ Y +LEL+L DRCR+++ KF+E P N +WI+ ELE +
Sbjct 432 RRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETI 491
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
+ ERARAI E+A+S +++MPE++WK+YID E+ +R R LY +LL +TQHV
Sbjct 492 LGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHV 548
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I WI YA +EE K++ R RS+YE+AL+V + LW + E++ + AR
Sbjct 81 ISNWIKYAQWEE-SLKEIQRARSIYERALDVD----YRNITLWLKYAEMEMKNRQVNHAR 135
Query 62 KIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
I+ AI + + + Y +E LGN+ RQ+ +++E P +AW I E+
Sbjct 136 NIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELR 194
Query 121 AEETERARAICEIAVSMEQMEMPELI-WKAYIDMEVNWGALDRARALYERLLD 172
+E ERAR I E V + P + W Y E AR +YER ++
Sbjct 195 YKEVERARTIYERFV----LVHPAVKNWIKYARFEEKHAYFAHARKVYERAVE 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +W+ YA E ++ + ++ R+++++A+ +P + W + E N+ AR
Sbjct 115 ITLWLKYAEME-MKNRQVNHARNIWDRAITTLPR----VNQFWYKYTYMEEMLGNVAGAR 169
Query 62 KIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLA 121
++F + +E+ + +Y ELR ++R R I+ +F+ +P K WI+ E
Sbjct 170 QVFERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKH 228
Query 122 EETERARAICEIAVSMEQME-MPELIWKAYIDMEVNWGALDRARALYERLLDK 173
AR + E AV E M E ++ A+ E N +R R +Y+ LD+
Sbjct 229 AYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDR 281
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 35/120 (29%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAK------------------------------ 42
ELQ ++ DRCR +YEK LE P S+ K
Sbjct 455 ELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMP 514
Query 43 --LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLEL---RLGNIDRCRQIH 97
LW ++ FEI Q ER R ++ + + K++ ++AQ EL + G++ +CRQI+
Sbjct 515 EVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQIY 574
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query 111 WIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERL 170
WI+ + E +E +RAR+I E A+ ++ + +W Y +ME+ ++ AR +++R
Sbjct 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNI--TLWLKYAEMEMKNRQVNHARNIWDRA 141
Query 171 LDKTQHVN 178
+ VN
Sbjct 142 ITTLPRVN 149
> pfa:PFD0180c CGI-201 protein, short form; K12869 crooked neck
Length=780
Score = 198 bits (504), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 126/176 (71%), Gaps = 0/176 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+Y++FEEL A+++ R R VY ++++ F+F K++ L+ FE+RQLN+ +A
Sbjct 369 YIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKA 428
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R IF A+ EKIF+ + + EL+LGNI CR ++AK++E +P N KAWI MI E+
Sbjct 429 RSIFNNALQTIPNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELS 488
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQH 176
+E ERAR I EIA++++ M++PELIWK YIDME+N D AR LY+RLL+ TQH
Sbjct 489 LDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLNITQH 544
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +I Y L+E ++ KD++RCRS++E+AL + ++ LW ++ E+ N+ AR
Sbjct 71 ISTYIKYGLWE-IKQKDIERCRSIFERALNID----YTNKNLWLKYIEVELINKNINSAR 125
Query 62 KIFGAAIGKCGKEKIF-QAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
+ + E IF + YA LE L N R I+ ++I+ + ++ +++ I E
Sbjct 126 NLLERVVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIK-FKIDESSFLCYIYFEER 184
Query 121 AEETERARAICE-IAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLD 172
E + R I E + VS+ ++E + +I E + + RARA YE+ ++
Sbjct 185 CNEINKCREIFERLIVSIPKLEC----FYKFIKFEKKYKNIVRARAAYEKCIE 233
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
WIS FE L +++R R + E A+ + KL +W ++ EI + ARK++
Sbjct 479 WISMINFE-LSLDEVERARQIAEIAINLDDMKLPEL--IWKNYIDMEINLQEYDNARKLY 535
Query 65 GAAIGKCGKEKIFQAYAQLE-LRLGNIDRCRQIHAKFIE 102
+ K++++YA+ + L +I+ CR+I + IE
Sbjct 536 DRLLNITQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIE 574
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
++ Y FEE + ++++CR ++E+ + +P KL F K F+ FE + N+ RAR
Sbjct 175 FLCYIYFEE-RCNEINKCREIFERLIVSIP-KLECFYK----FIKFEKKYKNIVRAR--- 225
Query 65 GAAIGKCGK--------EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNP-----KAW 111
AA KC + E + + E +RC++I+ + ++ P N K +
Sbjct 226 -AAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNF 284
Query 112 IQMIELEVLAEETERARAICEIAVSMEQMEMPEL---IWKAYIDM-EVNWGALD------ 161
+Q + +E + I E ++++ + IW YI + E N ++
Sbjct 285 LQFQKKYANKDELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCII 344
Query 162 RARALYER 169
R R LYER
Sbjct 345 RIRDLYER 352
> ath:AT3G13210 crooked neck protein, putative / cell cycle protein,
putative
Length=657
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 127/176 (72%), Gaps = 0/176 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
YIY+WI+YA F E+ +D++ R VY L+++PH FSFAK+W L EIRQLNL A
Sbjct 340 YIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGA 399
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R+I G AIGK K+KIF+ Y ++EL+L NIDRCR+++ +++E P N AW + E E+
Sbjct 400 RQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMS 459
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQH 176
ETER RAI E+A+S ++MPEL+WK YID E++ G L+R RALYERLLD+T+H
Sbjct 460 LAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERLLDRTKH 515
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+ YA FE ++ K ++ R+V+++A+ ++P +LW F+ E + N+ AR+I
Sbjct 93 VWVKYADFE-MKNKSVNEARNVWDRAVSLLPR----VDQLWYKFIHMEEKLGNIAGARQI 147
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEE 123
I ++ + + + EL+ I+ R I+ +F+ +P A+I+ + E+ +
Sbjct 148 LERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHP-KVSAYIRYAKFEMKHGQ 206
Query 124 TERARAICEIAVS-MEQMEMPELIWKAYIDMEVNWG-ALD-----RARALYERLL 171
E A + E A + E E+++ A+ + E + ALD RA LY + +
Sbjct 207 VELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFV 261
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query 41 AKLWTLFVAFEIRQLNLERARKIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAK 99
++W + FE++ ++ AR ++ A+ + ++++ + +E +LGNI RQI +
Sbjct 91 TQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILER 150
Query 100 FIETYPLNPKAWIQMIELEVLAEETERARAICE 132
+I P + +AW+ I+ E+ E E AR+I E
Sbjct 151 WIHCSP-DQQAWLCFIKFELKYNEIECARSIYE 182
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 32/104 (30%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAK------------------------------ 42
ELQ +++DRCR +YE+ LE P +++ K
Sbjct 423 ELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMP 482
Query 43 --LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLE 84
LW ++ FEI + LER R ++ + + K++ +A+ E
Sbjct 483 ELLWKTYIDFEISEGELERTRALYERLLDRTKHCKVWVDFAKFE 526
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query 59 RARKIFGAAIGKCG-KEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
R RK F I + +++ YA E++ +++ R + + + P + W + I +
Sbjct 75 RRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHM 134
Query 118 EVLAEETERARAICE--IAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLL 171
E AR I E I S +Q W +I E+ + ++ AR++YER +
Sbjct 135 EEKLGNIAGARQILERWIHCSPDQQ-----AWLCFIKFELKYNEIECARSIYERFV 185
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 50/196 (25%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
W+ + FE L+ +++ RS+YE+ + P + + FE++ +E A K+F
Sbjct 161 WLCFIKFE-LKYNEIECARSIYERFVLCHPK-----VSAYIRYAKFEMKHGQVELAMKVF 214
Query 65 GAAIGKCGKEK----IFQAYAQLE----LRLGNIDRCR--QIHAKFI------------- 101
A + ++ +F A+A+ E L I + R +++KF+
Sbjct 215 ERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIE 274
Query 102 ---------------ETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPEL- 145
PLN +W + LE +R R I E AV+ + PE
Sbjct 275 DAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVA--NVPPPEAQ 332
Query 146 ---IWKAYIDMEVNWG 158
W+ YI + +N+
Sbjct 333 EKRYWQRYIYLWINYA 348
> bbo:BBOV_III004750 17.m07426; tetratricopeptide repeat domain
containing protein; K12869 crooked neck
Length=665
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 122/177 (68%), Gaps = 3/177 (1%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
Y Y+W+ YA+F EL + +DR +VY KAL+V+P FAK + L +RQ +L+
Sbjct 379 YSYLWVGYAIFSELTLQQLDRAVAVYRKALQVLPK---DFAKFYILLAELYLRQGDLDSM 435
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
RK FG +G+C K K+F+ YAQ+EL+LGN+DRCR IHAK+IET+P P++W+ IELE++
Sbjct 436 RKTFGLGLGQCKKPKLFETYAQIELKLGNLDRCRHIHAKYIETWPFKPESWLSFIELELM 495
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
E +R R +CE A++M+QM+MPE +W YI++E W R +YERLL KT H+
Sbjct 496 LNERKRVRGLCEAAIAMDQMDMPETVWNRYIEIEREWQQYAHVRNIYERLLLKTTHI 552
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
++ WI YAL+E Q +D R RSV+E+AL+V P+ + LW ++ E++ N+ A
Sbjct 72 HMGTWIKYALWEANQ-QDFRRARSVFERALQVDPNNV----NLWLRYIETEMKNKNVNAA 126
Query 61 RKIFGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEV 119
R +F + + ++ + YA E LGN R + +++E P + ++W+ I+ E
Sbjct 127 RNLFDRVVSLLPRVDQFWFKYAHFEELLGNYAGARTVFERWMEWNP-DDRSWMLYIKFEE 185
Query 120 LAEETERARAICE 132
E +R R I E
Sbjct 186 RCGELDRCRQIFE 198
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 40/203 (19%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
++ +A FE+ Q K+ R+ Y K LE++P +L + + + F AFE +Q NL A K++
Sbjct 210 FLKFAKFEQRQ-KNYPLARAAYVKCLEIIPPELLT-EEFFLKFAAFETQQGNLSGAEKVY 267
Query 65 GAAIG---KCGKEKIFQAYAQLELR------LGNI---DRCRQIHAKFIETYPLNPKAWI 112
+G + E++++++ + + + N+ R + + I++ P N W
Sbjct 268 EQGLGILPRESSEQLYRSFVSFQKQHRDRETIDNLVVTKRRNEYEEQLIDS-PCNYDIWF 326
Query 113 QMIELE---------VLAEET----ERARAICEI---AVSMEQMEMPELIWKAY------ 150
I +E L +++ +RAR +CE+ A+S +W+ Y
Sbjct 327 DYIRMEEQQLGPHATSLPDDSHTDAQRAR-VCELYERAISNLPQVDDRRLWRRYSYLWVG 385
Query 151 --IDMEVNWGALDRARALYERLL 171
I E+ LDRA A+Y + L
Sbjct 386 YAIFSELTLQQLDRAVAVYRKAL 408
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 32/124 (25%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKL---FSFAKL-------------------------- 43
EL+ ++DRCR ++ K +E P K SF +L
Sbjct 459 ELKLGNLDRCRHIHAKYIETWPFKPESWLSFIELELMLNERKRVRGLCEAAIAMDQMDMP 518
Query 44 ---WTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKF 100
W ++ E R I+ + K K+F +Y + E G D R I +
Sbjct 519 ETVWNRYIEIEREWQQYAHVRNIYERLLLKTTHIKVFLSYCEFEFTSGFPDNARAIAERA 578
Query 101 IETY 104
+E Y
Sbjct 579 LEYY 582
> tpv:TP02_0476 crooked neck protein; K12869 crooked neck
Length=657
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 111/177 (62%), Gaps = 4/177 (2%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
Y Y+WI YA F ELQ +R +Y K+L+++P F+K++ +R +L++
Sbjct 377 YSYLWIFYAFFSELQLDSKERAEEIYLKSLQILPR---DFSKIYIYLSQLYLRMGDLKKM 433
Query 61 RKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVL 120
R + G AIG C KEKIF+ Y+ +EL+LGNIDRCR I K++E YP N K+W+ I E+L
Sbjct 434 RSVMGNAIGLCKKEKIFETYSDIELKLGNIDRCRIIFTKYVEIYPYNYKSWLAYINFELL 493
Query 121 AEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
E R R +CE A+ MEQM PE IW YI +E N+ + ALY++LL KTQH+
Sbjct 494 LNEINRVRKLCEYAIEMEQMNNPEAIWNKYISIEKNY-SYSNVIALYKKLLQKTQHI 549
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERA 60
+I WI YA++E Q ++ R RS++E+AL V P+ LW ++ E++ N+ A
Sbjct 72 HIGTWIKYAVWEANQ-QEFRRARSIFERALLVDPNN----PSLWLRYIETEMKNKNINSA 126
Query 61 RKIFGAAIGKCGKEKIFQ---AYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
R +F + C +I Q YA E LGN R I+ +++E P + KAW+ I+
Sbjct 127 RNLFDRVV--CLLPRIDQFWFKYAHFEELLGNYAGARSIYERWMEWNPED-KAWMLYIKF 183
Query 118 EVLAEETERARAI 130
E E +R R+I
Sbjct 184 EERCGEVDRCRSI 196
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query 80 YAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQ 139
YA E R R I + + P NP W++ IE E+ + AR + + V +
Sbjct 79 YAVWEANQQEFRRARSIFERALLVDPNNPSLWLRYIETEMKNKNINSARNLFDRVVCL-- 136
Query 140 MEMPEL--IWKAYIDMEVNWGALDRARALYERLLD 172
+P + W Y E G AR++YER ++
Sbjct 137 --LPRIDQFWFKYAHFEELLGNYAGARSIYERWME 169
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query 110 AWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
WI+ E +E RAR+I E A+ ++ P L W YI+ E+ ++ AR L++R
Sbjct 75 TWIKYAVWEANQQEFRRARSIFERALLVDP-NNPSL-WLRYIETEMKNKNINSARNLFDR 132
Query 170 LL 171
++
Sbjct 133 VV 134
> sce:YLR117C CLF1, NTC77, SYF3; Clf1p; K12869 crooked neck
Length=687
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 103/181 (56%), Gaps = 5/181 (2%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALE-VVPHKLFSFAKLWTLFVAFEIRQLNLER 59
YIY+W+ Y + EL+ ++ ++++ ++ ++PHK F+F+K+W ++ F IR ++ +
Sbjct 363 YIYLWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFTFSKIWLMYAKFLIRHDDVPK 422
Query 60 ARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEV 119
ARKI G AIG C K K F+ Y +LE++L DR R+I+ KFIE P + + W Q ELE
Sbjct 423 ARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDLQIWSQYGELEE 482
Query 120 LAEETERARAICEIAVSMEQ----MEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQ 175
+ +R R I IA+ E ++ + YI E ++AR LY R L+ Q
Sbjct 483 NLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFETESQEFEKARKLYRRYLELNQ 542
Query 176 H 176
+
Sbjct 543 Y 543
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIF 64
WI YA FE ++ DM R RS++E+AL V SF LW ++ E++ + AR +
Sbjct 68 WIRYAQFE-IEQHDMRRARSIFERALLVDS----SFIPLWIRYIDAELKVKCINHARNLM 122
Query 65 GAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEE 123
AI + +K++ Y +E L N++ R ++ K+ P AW ++ E+ +
Sbjct 123 NRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEP-GVNAWNSFVDFEIRQKN 181
Query 124 TERARAICEIAVSMEQMEMPEL-IWKAYIDMEVNWGALDRARALYERLLD 172
R I V M P++ W ++ E G + R++Y +D
Sbjct 182 WNGVREIYSKYV----MAHPQMQTWLKWVRFENRHGNTEFTRSVYSLAID 227
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W Y + EE +++ RS+Y K + P W FV FEIRQ N R+I
Sbjct 135 LWYKYLIVEE-SLNNVEIVRSLYTKWCSLEPG-----VNAWNSFVDFEIRQKNWNGVREI 188
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYP--LNPKAWIQM------- 114
+ + + + + + + E R GN + R +++ I+T N + W M
Sbjct 189 YSKYVMAHPQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVN 248
Query 115 --IELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALD 161
E +E ER+ A+ +IA+ E+ +L+ +D E +G ++
Sbjct 249 SFAHWEAAQQEYERSSALYQIAI--EKWPSNQLLKAGLLDFEKQFGDIN 295
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIG--- 69
E++ K+ DR R +YEK +E P L ++W+ + E + +R R I+ A+
Sbjct 447 EVKLKEFDRVRKIYEKFIEFQPSDL----QIWSQYGELEENLGDWDRVRGIYTIALDENS 502
Query 70 ----KCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQM 114
K K + Q Y E ++ R+++ +++E +P++WI+
Sbjct 503 DFLTKEAKIVLLQKYITFETESQEFEKARKLYRRYLELNQYSPQSWIEF 551
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query 92 RCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYI 151
R R + +++ L+ WI+ + E+ + RAR+I E A+ ++ +P +W YI
Sbjct 49 RKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIP--LWIRYI 106
Query 152 DMEVNWGALDRARALYERLLDKTQHVN 178
D E+ ++ AR L R + V+
Sbjct 107 DAELKVKCINHARNLMNRAISTLPRVD 133
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 35/136 (25%)
Query 44 WTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIET 103
W + FEI Q ++ RAR IF +R + + FI
Sbjct 68 WIRYAQFEIEQHDMRRARSIF--------------------------ERALLVDSSFI-- 99
Query 104 YPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRA 163
PL WI+ I+ E+ + AR + A+S + + +W Y+ +E + ++
Sbjct 100 -PL----WIRYIDAELKVKCINHARNLMNRAIST--LPRVDKLWYKYLIVEESLNNVEIV 152
Query 164 RALYERLLDKTQHVNA 179
R+LY + VNA
Sbjct 153 RSLYTKWCSLEPGVNA 168
> cpv:cgd7_3690 crooked neck protein HAT repeats ; K12869 crooked
neck
Length=736
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 88/138 (63%), Gaps = 0/138 (0%)
Query 40 FAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAK 99
FAK++ F ++R +L +ARKI G +G+ +F Y +E +LGN DRCR + K
Sbjct 461 FAKVFIYFSNHQLRIGDLNKARKILGIGLGRVPCINLFDHYIDIEFKLGNFDRCRVLFTK 520
Query 100 FIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGA 159
+IE P++ +WI+ ++ E E +R +I E A+SM +++ PE+IW+ YI++ +N
Sbjct 521 YIEYDPVSTNSWIKYMQFEYNLCEIKRVISIAESAISMPELDSPEIIWQYYIELMINEKN 580
Query 160 LDRARALYERLLDKTQHV 177
++ A +Y+RLL+KTQH+
Sbjct 581 IEFADIIYKRLLEKTQHI 598
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query 43 LWTLFVAFEIRQLNLERARKIFGAAI-GKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFI 101
L+ + +E Q N++ +R IF I +I++ Y +LE+ GNI+ R + +
Sbjct 104 LYLSYAKWESLQNNIKNSRSIFERGILVNYENVRIWREYIKLEITNGNINNARNLFERVT 163
Query 102 ETYPLNPKAWIQMIELEVLAEETERARAI 130
P + WI+ I++E++ + R I
Sbjct 164 HLLPRIDEFWIKYIQMELILKNYINVRHI 192
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query 59 RARKIFGAAIG-KCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
R RK F +I K K ++ +YA+ E NI R I + I N + W + I+L
Sbjct 86 RKRKEFEDSIRRKRWKISLYLSYAKWESLQNNIKNSRSIFERGILVNYENVRIWREYIKL 145
Query 118 EVLAEETERARAICEIAVSMEQMEMPEL--IWKAYIDMEVNWGALDRARALYERLLD 172
E+ AR + E + +P + W YI ME+ R +Y + +D
Sbjct 146 EITNGNINNARNLFERVTHL----LPRIDEFWIKYIQMELILKNYINVRHIYRKWID 198
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
+ IW Y E + +++ R+++E+ V H L + W ++ E+ N R
Sbjct 136 VRIWREYIKLE-ITNGNINNARNLFER----VTHLLPRIDEFWIKYIQMELILKNYINVR 190
Query 62 KIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELE 118
I+ I I+ Y++ E G I R + I +YP + +I+ I+ E
Sbjct 191 HIYRKWIDWKPDPSIYIQYSKFEEECGEIKSARGVMKDLIISYP-DESNFIEYIKFE 246
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKC- 71
E + + DRCR ++ K +E P S W ++ FE ++R I +AI
Sbjct 505 EFKLGNFDRCRVLFTKYIEYDPVSTNS----WIKYMQFEYNLCEIKRVISIAESAISMPE 560
Query 72 --GKEKIFQAYAQLELRLGNIDRCRQIHAKFIE 102
E I+Q Y +L + NI+ I+ + +E
Sbjct 561 LDSPEIIWQYYIELMINEKNIEFADIIYKRLLE 593
> ath:AT3G51110 crooked neck protein, putative / cell cycle protein,
putative
Length=413
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+ YA +EE Q KD DR RSV+E+ALE ++ + LW + FE+R ++ AR +
Sbjct 73 VWVRYADWEESQ-KDHDRARSVWERALEDESYRNHT---LWLKYAEFEMRNKSVNHARNV 128
Query 64 FGAAIGKCGK-EKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAE 122
+ A+ + ++ + Y +E LGNID R+I ++++ P + +AW+ I+ E+
Sbjct 129 WDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSP-DQQAWLCFIKFELRYN 187
Query 123 ETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
E ER+R+I E V + + I A +M+ + +L AR +YER ++ + V
Sbjct 188 EIERSRSIYERFV-LCHPKASSFIRYAKFEMKNSQVSL--ARIVYERAIEMLKDV 239
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+ YA FE ++ K ++ R+V+++A++++P + W ++ E N++ ARKI
Sbjct 108 LWLKYAEFE-MRNKSVNHARNVWDRAVKILPR----VDQFWYKYIHMEEILGNIDGARKI 162
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEE 123
F + ++ + + + ELR I+R R I+ +F+ +P ++I+ + E+ +
Sbjct 163 FERWMDWSPDQQAWLCFIKFELRYNEIERSRSIYERFVLCHP-KASSFIRYAKFEMKNSQ 221
Query 124 TERARAICEIAVSM--EQMEMPELIWKAYIDMEVNWGALDRARALYERLLD 172
AR + E A+ M + E E+I+ A+ + E ++RAR LY+ LD
Sbjct 222 VSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALD 272
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
W Y EE+ ++D R ++E+ ++ P + + W F+ FE+R +ER+R I
Sbjct 142 FWYKYIHMEEILG-NIDGARKIFERWMDWSPDQ-----QAWLCFIKFELRYNEIERSRSI 195
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETY-PLNPKA---WIQMIELEV 119
+ + K F YA+ E++ + R ++ + IE + +A ++ E E
Sbjct 196 YERFVLCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEE 255
Query 120 LAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG 158
L +E ERAR + + A+ E ++K ++ E +G
Sbjct 256 LCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYG 294
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%), Gaps = 0/34 (0%)
Query 1 YIYIWISYALFEELQAKDMDRCRSVYEKALEVVP 34
YIY+WI YALFEE+ A+D++R R+VY + L ++P
Sbjct 364 YIYLWIDYALFEEILAEDVERTRAVYRECLNLIP 397
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query 6 ISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFG 65
I YA FE ++ + R VYE+A+E++ ++ F FE +ERAR ++
Sbjct 210 IRYAKFE-MKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYK 268
Query 66 AA---IGKCGKEKIFQAYAQLELRLGN--------IDRCRQIHAKFIETYPLNPKAWIQM 114
A I K E +++ + E + GN + R + + + PLN +W
Sbjct 269 YALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDY 328
Query 115 IELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG--------ALDRARAL 166
I LE + +R R + E A++ + + W+ YI + +++ ++R RA+
Sbjct 329 ISLEETLGDKDRIREVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAV 388
Query 167 YERLLD 172
Y L+
Sbjct 389 YRECLN 394
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query 57 LERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIE 116
L+ AR+ + I + K+KI + E RL R R+ I N + W++ +
Sbjct 24 LKEAREREDSRILRPPKQKITDSDELAEYRL----RRRKEFEDQIRGAKTNSQVWVRYAD 79
Query 117 LEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
E ++ +RAR++ E A+ E L W Y + E+ +++ AR +++R
Sbjct 80 WEESQKDHDRARSVWERALEDESYRNHTL-WLKYAEFEMRNKSVNHARNVWDR 131
> dre:323855 c20orf14, fc12b02, prpf6, wu:fa05f07, wu:fc12b02,
zgc:65913; c20orf14 homolog (H. sapiens); K12855 pre-mRNA-processing
factor 6
Length=944
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query 16 AKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK 75
A D+ RS+ A + P+ ++W V E ERAR++ A +
Sbjct 624 AGDVPAARSILALAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKARSSAPTAR 679
Query 76 IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
+F +LE LGNI+ ++ + ++ Y PK W+ ++E +E +RAR +
Sbjct 680 VFMKSVRLEWVLGNIEAAHELCTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGL 739
Query 136 SMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
M +W +E G L RARA+ E+
Sbjct 740 KKCPHSMS--LWLLLSRLEEKVGQLTRARAILEK 771
> ath:AT4G03430 EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing
factor, transesterification mechanism; K12855 pre-mRNA-processing
factor 6
Length=1029
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query 16 AKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK 75
A D+ R++ ++A +P+ ++W E ERAR + A + G E+
Sbjct 706 AGDVPAARAILQEAYAAIPNS----EEIWLAAFKLEFENKEPERARMLLAKARERGGTER 761
Query 76 IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
++ A +E LGN++ R++ + ++ +P K W+ + +LE + E+AR + +
Sbjct 762 VWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGL 821
Query 136 SMEQMEMPELIWKAYIDMEVNWGALDRARAL 166
+P +W + D+E L++ARA+
Sbjct 822 KHCPHCIP--LWLSLADLEEKVNGLNKARAI 850
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +W+S A EE + +++ R++ A + P A+LW + E+R N A
Sbjct 828 IPLWLSLADLEE-KVNGLNKARAILTTARKKNP----GGAELWLAAIRAELRHDNKREAE 882
Query 62 KIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLA 121
+ A+ C K I A A +E+ + + I A ++ +P I + +L
Sbjct 883 HLMSKALQDCPKSGILWA-ADIEMAPRPRRKTKSIDA--MKKCDRDPHVTIAVAKLFWQD 939
Query 122 EETERARAICEIAVSM 137
++ E+ARA E AV++
Sbjct 940 KKVEKARAWFERAVTV 955
> xla:447198 prpf6, MGC80263; PRP6 pre-mRNA processing factor
6 homolog; K12855 pre-mRNA-processing factor 6
Length=948
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query 16 AKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK 75
A D+ RS+ A + P+ ++W V E ERAR++ A +
Sbjct 628 AGDVPAARSILALAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKARSSAPTAR 683
Query 76 IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
+F +LE LGNI+ + + + + Y PK W+ ++E E+TE+AR
Sbjct 684 VFMKSVKLEWVLGNIEAAQDLCEEALRHYEDFPKLWMMKGQIEEQMEQTEKARDAYN--Q 741
Query 136 SMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
+++ +W +E G L RARA+ E+
Sbjct 742 GLKKCIHSTSLWLLLSRLEEKVGQLTRARAILEK 775
> mmu:68879 Prpf6, 1190003A07Rik, 2610031L17Rik, ANT-1, MGC11655,
MGC36967, MGC38351, U5-102K; PRP6 pre-mRNA splicing factor
6 homolog (yeast); K12855 pre-mRNA-processing factor 6
Length=941
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Query 16 AKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK 75
A D+ RS+ A + P+ ++W V E ERAR++ A +
Sbjct 621 AGDVPAARSILALAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKARSSAPTAR 676
Query 76 IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
+F +LE LGNI +++ + + Y PK W+ ++E E E+AR +
Sbjct 677 VFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGL 736
Query 136 SMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
P +W +E G L RARA+ E+
Sbjct 737 KKCPHSTP--LWLLLSRLEEKIGQLTRARAILEK 768
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query 39 SFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKE-KIFQAYAQLELRLGNIDRCRQIH 97
F KLW + E + +E+AR+ + + KC ++ ++LE ++G + R R I
Sbjct 707 DFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAIL 766
Query 98 AKFIETYPLNPKAWIQMIELEVLA 121
K P NP W++ + LE A
Sbjct 767 EKSRLKNPKNPGLWLESVRLEYRA 790
> ath:AT3G11964 RNA binding; K14792 rRNA biogenesis protein RRP5
Length=1896
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 13/176 (7%)
Query 3 YIWISYALFEELQAKDMDRCRSVYEKALEVV-----PHKLFSFAKLWTLFVAFEIRQLN- 56
++WI Y F L D+++ RS+ E+AL + KL +W + E N
Sbjct 1648 FVWIKYMAFM-LSLADIEKARSIAERALRTINIREEEEKL----NIWVAYFNLENEHGNP 1702
Query 57 -LERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMI 115
E +K+F A C +K++ A + R ++ + I+ + + K W++ I
Sbjct 1703 PEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKI 1762
Query 116 ELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLL 171
+ + E + + + + + + I + I +E G DR R+L+E +L
Sbjct 1763 QSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAI-LEFKCGVADRGRSLFEGVL 1817
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query 27 EKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQ---L 83
+K L+ + K K+W + ++Q N E + + A+ + K + +Q L
Sbjct 1741 DKLLDEMIKKFKQSCKIWLRKIQSSLKQ-NEEAIQSVVNRALLCLPRHKHIKFISQTAIL 1799
Query 84 ELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSM 137
E + G DR R + + YP W ++ E+ E + R++ E A+S+
Sbjct 1800 EFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISL 1853
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query 99 KFIETYPLNPKAWIQMIELEVLAEETERARAICEIA---VSMEQMEMPELIWKAYIDMEV 155
K + + P + WI+ + + + E+AR+I E A +++ + E IW AY ++E
Sbjct 1638 KLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLEN 1697
Query 156 NWG--ALDRARALYER 169
G + + ++ER
Sbjct 1698 EHGNPPEESVKKVFER 1713
> dre:387600 xab2, MGC198247, zgc:63498, zgc:63949; XPA binding
protein 2; K12867 pre-mRNA-splicing factor SYF1
Length=851
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+S+A F E + +D R+++EKA +V ++ A +W + E+R N ++A +I
Sbjct 392 LWVSFAKFYE-DNEQIDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYDQALRI 450
Query 64 FGAAIGKCGKE------------------KIFQAYAQLELRLGNIDRCRQIHAKFIETYP 105
A ++ K++ A LE LG + ++ + I+
Sbjct 451 LRKATAIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRI 510
Query 106 LNPKAWIQ---MIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVN-WGA-- 159
P+ I +E EE+ +A E +++ + IW Y+ ++ +G
Sbjct 511 ATPQIIINYAMFLEEHNYFEESFKA---YERGIALFKWPNVHDIWNTYLTKFIDRYGGKK 567
Query 160 LDRARALYERLLD 172
L+RAR L+E+ LD
Sbjct 568 LERARDLFEQALD 580
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query 4 IWISY--ALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLER-A 60
IW +Y + K ++R R ++E+AL+ P K +AK L A + L R A
Sbjct 551 IWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAK---YAKTIYLLYAKLEEEYGLARHA 607
Query 61 RKIF---GAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNP--KAWIQMI 115
++ AA+ + ++F Y + + + R I+ K IE P ++
Sbjct 608 MAVYERATAAVEAEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHARDMCLRFA 667
Query 116 ELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARAL 166
++E E +RARAI + + W+ + + E+ G D R +
Sbjct 668 DMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREM 718
> xla:779090 pdcd11, alg-4, alg4, nfbp, rrp5; programmed cell
death 11; K14792 rRNA biogenesis protein RRP5
Length=1812
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query 43 LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK----IFQAYAQLELRLGNIDRCRQIHA 98
+W F F ++Q + K+ A+ K EK + +AQLE +LG+ +R + +
Sbjct 1668 VWIKFATFLLKQGQGDGTHKLLQRAL-KSLPEKDHVDVISKFAQLEFQLGDTERAKALFE 1726
Query 99 KFIETYPLNPKAWIQMIELEVLAEETERARAICE--IAVSMEQMEMPELIWKAYIDMEVN 156
+ +YP W I++ V + R I E I +S+ ++ + +K Y++ E
Sbjct 1727 STLSSYPKRTDLWSVYIDMMVKHGSQKEVRDIFERVIHLSLAAKKI-KFFFKRYLEYEKK 1785
Query 157 WGALDRARALYERLL 171
G+ + +A+ E+ L
Sbjct 1786 HGSTESVQAVKEKAL 1800
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 50/210 (23%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAK------LWTLFVAFEIRQLNL 57
+W+ Y F L A ++++ R V E+AL+ + SF + +W + E
Sbjct 1562 LWLQYMAFH-LHATEIEKARVVAERALKTI-----SFREEQEKLNVWVALLNLENMYGTE 1615
Query 58 ERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWI----- 112
E K F A+ K+FQ A + ++ + ++ ++ + WI
Sbjct 1616 ESLTKAFERAVQYNEPLKVFQQLADIYIKSEKFKQAEDLYNTMLKRFRQEKSVWIKFATF 1675
Query 113 -------------------------------QMIELEVLAEETERARAICEIAVSMEQME 141
+ +LE +TERA+A+ E +S
Sbjct 1676 LLKQGQGDGTHKLLQRALKSLPEKDHVDVISKFAQLEFQLGDTERAKALFESTLSSYPKR 1735
Query 142 MPELIWKAYIDMEVNWGALDRARALYERLL 171
+W YIDM V G+ R ++ER++
Sbjct 1736 TD--LWSVYIDMMVKHGSQKEVRDIFERVI 1763
> hsa:22984 PDCD11, ALG-4, ALG4, KIAA0185, NFBP, RRP5; programmed
cell death 11; K14792 rRNA biogenesis protein RRP5
Length=1871
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query 43 LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK----IFQAYAQLELRLGNIDRCRQIHA 98
+W + AF +R+ + ++ A+ +C K + +AQLE +LG+ +R + I
Sbjct 1727 VWIKYGAFLLRRSQAAASHRVLQRAL-ECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFE 1785
Query 99 KFIETYPLNPKAWIQMIELEVLAEETERARAICE--IAVSMEQMEMPELIWKAYIDMEVN 156
+ TYP W I++ + + R I E I +S+ M + +K Y+D E
Sbjct 1786 NTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRM-KFFFKRYLDYEKQ 1844
Query 157 WGALDRARALYERLLD 172
G +A+ + L+
Sbjct 1845 HGTEKDVQAVKAKALE 1860
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAK------LWTLFVAFEIRQLNL 57
+W+ Y F LQA ++++ R+V E+AL+ + SF + +W + E +
Sbjct 1621 LWLQYMAFH-LQATEIEKARAVAERALKTI-----SFREEQEKLNVWVALLNLENMYGSQ 1674
Query 58 ERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWI----- 112
E K+F A+ K+F A + + +++ + ++ + WI
Sbjct 1675 ESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAF 1734
Query 113 -------------------------------QMIELEVLAEETERARAICEIAVSMEQME 141
+ +LE + ERA+AI E +S
Sbjct 1735 LLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKR 1794
Query 142 MPELIWKAYIDMEVNWGALDRARALYERLL 171
+W YIDM + G+ R ++ER++
Sbjct 1795 TD--VWSVYIDMTIKHGSQKDVRDIFERVI 1822
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query 99 KFIETYPLNPKAWIQMIELEVLAEETERARAICEIA---VSMEQMEMPELIWKAYIDMEV 155
+ + + P + W+Q + + A E E+ARA+ E A +S + + +W A +++E
Sbjct 1610 RLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLEN 1669
Query 156 NWGALDRARALYER 169
+G+ + ++ER
Sbjct 1670 MYGSQESLTKVFER 1683
> mmu:18572 Pdcd11, 1110021I22Rik, ALG-4, Pdcd7, mKIAA0185; programmed
cell death 11; K14792 rRNA biogenesis protein RRP5
Length=1862
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAK------LWTLFVAFEIRQLNL 57
+W+ Y F LQA ++++ R+V E+AL+ + SF + +W + E +
Sbjct 1612 LWLQYMAFH-LQATEIEKARAVAERALKTI-----SFREEQEKLNVWVALLNLENMYGSQ 1665
Query 58 ERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWI----- 112
E K+F A+ K+F A + + +++ + ++ + WI
Sbjct 1666 ESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAF 1725
Query 113 -------------------------------QMIELEVLAEETERARAICEIAVSMEQME 141
+ +LE + ERA+AI E +S
Sbjct 1726 VLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKR 1785
Query 142 MPELIWKAYIDMEVNWGALDRARALYERLL 171
+W YIDM + G+ R ++ER++
Sbjct 1786 TD--VWSVYIDMTIKHGSQTAVRDIFERVI 1813
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query 26 YEKALEVVPHKLFSFAK---LWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK----IFQ 78
Y++A E+ L F + +W + AF + + + ++ A+ +C K +
Sbjct 1698 YKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRAL-ECLPAKEHVDVIV 1756
Query 79 AYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICE--IAVS 136
+AQLE +LG+++R + I + TYP W I++ + R I E I +S
Sbjct 1757 KFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLS 1816
Query 137 MEQMEMPELIWKAYIDMEVNWGALDRARALYERLLD 172
+ M + +K Y+D E G +A+ + L+
Sbjct 1817 LAPKRM-KFFFKRYLDYEKQHGTEKDVQAVKAKALE 1851
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query 99 KFIETYPLNPKAWIQMIELEVLAEETERARAICEIA---VSMEQMEMPELIWKAYIDMEV 155
+ + + P + W+Q + + A E E+ARA+ E A +S + + +W A +++E
Sbjct 1601 RLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLEN 1660
Query 156 NWGALDRARALYER 169
+G+ + ++ER
Sbjct 1661 MYGSQESLTKVFER 1674
> tpv:TP04_0906 hypothetical protein
Length=1137
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query 2 IYIWISYALFEELQA---KDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLE 58
+YIW+SY F + D + R+++E +LEV+ +LW+ + FE ++L +
Sbjct 101 VYIWLSYLRFVSGNSHTLSDFNHLRALFESSLEVLGLHALDGPQLWSEYRHFE-QELISK 159
Query 59 RARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL- 117
R +GA I K +F QLEL L + + + P + + + E
Sbjct 160 LPRDQYGAQIDKV--RSLF--CRQLELPLAGLPDLLDEYLVWESELPSDYRKPTAVAEAA 215
Query 118 EVLAEETERARAICEIAVSMEQMEMPEL-----IWKAYIDMEVNWGALDRARALYERLLD 172
E R E+ + + EM +W YID E+ G + R Y R LD
Sbjct 216 HKRGFEGWEQRKCFELKIQSDFHEMMSRDNMNSLWNEYIDFELKCGDMPRIMITYHRALD 275
> cel:C16A3.3 let-716; LEThal family member (let-716); K14792
rRNA biogenesis protein RRP5
Length=1743
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query 42 KLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK----IFQAYAQLELRLGNIDRCRQIH 97
++WTL + Q + + AR++ A+ K + + +AQLE + G+ +R R +
Sbjct 1594 EVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAERGRTLL 1653
Query 98 AKFIETYPLNPKAWIQMIELEVLAEETERARAI----CEIAVSMEQMEMPELIWKAYIDM 153
+ +P W+ E + E AR + C + S+ +M ++K +++M
Sbjct 1654 EGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRP---LYKKWLEM 1710
Query 154 EVNWG---ALDRARALYERLL 171
E G A++ +A E+ L
Sbjct 1711 ESKHGDAAAVELVKAKAEKFL 1731
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query 90 IDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV-SMEQMEMPEL--I 146
I++ + H++ + + P + WI+ + + + AR E A+ ++ E EL I
Sbjct 1468 IEKSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKI 1527
Query 147 WKAYIDMEVNWGALDRARALYER 169
W AY++MEV +G + ++ER
Sbjct 1528 WTAYLNMEVAYGDAATVQKVFER 1550
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query 5 WISYALFEELQAKDMDRCRSVYEKALEVV-PHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
WI Y + ++ D+ R E+AL + P + K+WT ++ E+ + +K+
Sbjct 1489 WIEY-MSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWTAYLNMEVAYGDAATVQKV 1547
Query 64 FGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNP-KAWIQMIELEVLAE 122
F A + + +++ + QI + ++ + N + W + E +
Sbjct 1548 FERACKNANAYTVHKTLSKIYQKFEKNAEATQILEQMVKKFRANQLEVWTLLAEHLMTQN 1607
Query 123 ETERARAICEIAV--SMEQMEMPELIWKAYIDMEVNWGALDRARALYERLL 171
+ + AR + A+ + + + +LI K + +E G +R R L E L+
Sbjct 1608 DQKAARELLPRALKSAPKAQQHVQLISK-FAQLEFKHGDAERGRTLLEGLV 1657
> bbo:BBOV_III009870 17.m07855; hypothetical protein
Length=950
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 38/190 (20%)
Query 4 IWISYALFEELQAK---DMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLN---- 56
+WI+Y FE +A ++ R R+++E+ L+ V LW+ + FE L+
Sbjct 104 LWIAYTRFERRRASADANIGRIRTLFERGLKSVGLHALDGPLLWSEYRTFEQELLDTYKN 163
Query 57 ------LERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKA 110
+ER R +F + QLEL L + + + P +
Sbjct 164 ADYGNQVERIRSLF---------------FRQLELPLSGLADLLDEYRVWESELPKEHRK 208
Query 111 WIQMIELEVLAE---ETERARAICEIAVSMEQMEM-----PELIWKAYIDMEVNWGALDR 162
+IE E++ + + +R E+ V E EM +W Y++ E+ G DR
Sbjct 209 --PVIEGEIIHKHGFDAWESRKCFELKVQSEFDEMLNPGKMNTLWNDYLNFELKGGDTDR 266
Query 163 ARALYERLLD 172
+Y R LD
Sbjct 267 ITIVYMRALD 276
> hsa:653889 pre-mRNA-processing factor 6-like
Length=406
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query 16 AKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK 75
A D+ RS+ A + P+ ++W V E ERAR++ A +
Sbjct 86 AGDVPAARSILALAFQANPNS----EEIWLAAVKLESENDEYERARRLLAKARSSAPTAR 141
Query 76 IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
+F +LE NI + + + + Y PK W+ ++E E E+AR +
Sbjct 142 VFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGL 201
Query 136 SMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
P +W +E G L RARA+ E+
Sbjct 202 KKCPHSTP--LWLLLSRLEEKIGQLTRARAILEK 233
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query 40 FAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK-IFQAYAQLELRLGNIDRCRQIHA 98
F KLW + E ++ +E+AR+ + + KC ++ ++LE ++G + R R I
Sbjct 173 FPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILE 232
Query 99 KFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEV 155
K P NP W++ + LE A A + +A ++++ ++W I +E
Sbjct 233 KSRLKNPKNPGLWLESVRLEYRAGLKNIANTL--MAKALQECPNSGILWSEAIFLEA 287
> dre:368864 prpf39, fa10d07, si:dz261o22.3, wu:fa10d07; PRP39
pre-mRNA processing factor 39 homolog (yeast); K13217 pre-mRNA-processing
factor 39
Length=752
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query 77 FQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVS 136
++ YA +E + G I +++ + ++ PL+ W+ I ++T A I S
Sbjct 203 WKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRAS 262
Query 137 MEQMEMP-------ELIWKAYIDMEVNWGALDRARALYERLL 171
E + + +W+AYI E G L A+Y+RLL
Sbjct 263 YEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLL 304
> hsa:24148 PRPF6, ANT-1, C20orf14, Prp6, TOM, U5-102K, hPrp6;
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae);
K12855 pre-mRNA-processing factor 6
Length=941
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query 39 SFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKE-KIFQAYAQLELRLGNIDRCRQIH 97
F KLW + E ++ +E+AR+ + + KC ++ ++LE ++G + R R I
Sbjct 707 DFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAIL 766
Query 98 AKFIETYPLNPKAWIQMIELEVLA 121
K P NP W++ + LE A
Sbjct 767 EKSRLKNPKNPGLWLESVRLEYRA 790
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query 16 AKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEK 75
A D+ RS+ A + P+ ++W V E ERAR++ A +
Sbjct 621 AGDVPAARSILALAFQANPNS----EEIWLAAVKLESENDEYERARRLLAKARSSAPTAR 676
Query 76 IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
+F +LE NI + + + + Y PK W+ ++E E E+AR +
Sbjct 677 VFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGL 736
Query 136 SMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
P +W +E G L RARA+ E+
Sbjct 737 KKCPHSTP--LWLLLSRLEEKIGQLTRARAILEK 768
> ath:AT3G17040 HCF107; HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107);
binding
Length=652
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query 22 CRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKE-KIFQAY 80
R +YEK + + + +W + E R N+ RAR++F AA K + +
Sbjct 221 ARILYEKGCQSTQGE---NSYIWQCWAVLENRLGNVRRARELFDAATVADKKHVAAWHGW 277
Query 81 AQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQM 140
A LE++ GNI + R + AK ++ N + + LE A E+AR + + A
Sbjct 278 ANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQATICNSR 337
Query 141 EMPELIWKAYIDMEVNWGALDRARALYER 169
W A+ +E+ AR L+E+
Sbjct 338 SCAS--WLAWAQLEIQQERYPAARKLFEK 364
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 42/202 (20%)
Query 3 YIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARK 62
YIW +A+ E + ++ R R +++ A V K A W + EI+Q N+ +AR
Sbjct 238 YIWQCWAVLEN-RLGNVRRARELFDAA--TVADKKHVAA--WHGWANLEIKQGNISKARN 292
Query 63 IFGAAIGKCGK-EKIFQAYAQLELRLG---------------NIDRC------------- 93
+ + CG+ E I+Q A LE + G N C
Sbjct 293 LLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQ 352
Query 94 ------RQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIW 147
R++ K ++ P N AW E ER R + +I ++ + P L+
Sbjct 353 ERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRD-PVLLQ 411
Query 148 KAYIDMEVNWGALDRARALYER 169
+ +E + + ARAL R
Sbjct 412 SLGL-LEYKHSSANLARALLRR 432
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query 13 ELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAI---- 68
E + + R++ +A E+ P +W + E ++ N AR+++ A+
Sbjct 417 EYKHSSANLARALLRRASELDPR----HQPVWIAWGWMEWKEGNTTTARELYQRALSIDA 472
Query 69 GKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERAR 128
+ QA+ LE R GN+ R++ + + W+ +LE +TERA
Sbjct 473 NTESASRCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAE 532
Query 129 AICEIAVSMEQMEMPELIW-KAYIDMEVNWGALDRARALYERLLDKTQH 176
I + + + W ++D+ +D A +RLL+ Q+
Sbjct 533 EIRNLYFQQRTEVVDDASWVTGFLDI------IDPALDTVKRLLNFGQN 575
> sce:YBR055C PRP6, RNA6, TSM7269; Prp6p; K12855 pre-mRNA-processing
factor 6
Length=899
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query 18 DMDRCRSVYEKALEVVPHKLFSFAKLW-TLFVAFEIRQLNLERARKIFGAAIGKCGKEKI 76
+++ R Y +VP+ LW +L EI N RAR I + K + +
Sbjct 683 NIEMSRETYLSGTRLVPNCPL----LWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVL 738
Query 77 FQ-AYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAV 135
F A Q+E+RLGN+D+ + + ++ +P N W++ I+L ++ + I + A+
Sbjct 739 FYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDAL 798
Query 136 SMEQME 141
Q +
Sbjct 799 RRTQND 804
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query 75 KIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL-EVLAEETERARAICEI 133
K F Q+ +GNI+ R+ + P P W+ + ++ E+ + RAR+I +
Sbjct 669 KFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIDEIDLKNPVRARSILDR 728
Query 134 AVSMEQMEMPE--LIWKAYIDMEVNWGALDRARALYERLLDK 173
+ ++ P+ L + A I ME+ G LD+A L + L K
Sbjct 729 GL----LKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQK 766
> dre:794079 pdcd11, MGC162501, cb680, im:7148359, sb:cb680, wu:fc68c10;
programmed cell death 11; K14792 rRNA biogenesis
protein RRP5
Length=1816
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Query 14 LQAKDMDRCRSVYEKALEVVPHKLFSFA-KLWTLFVAFEIRQLNLERARKIFGAAIGKCG 72
LQA +++ R+V E+AL+ + + +W + E + +K+F AI C
Sbjct 1575 LQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFERAIQYCE 1634
Query 73 KEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICE 132
++Q A + + I ++ ++ + + ++ + +++ A A+ +
Sbjct 1635 PLLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQ 1694
Query 133 IAV-SMEQMEMPELIWKAYIDMEVNWGALDRARALYERLL 171
A+ S+ E +LI + + +E +G ++A+++++++L
Sbjct 1695 RALQSLSSKEHVDLIAR-FARLEFQFGNSEKAKSMFDKVL 1733
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query 50 FEIRQLNLERARKIFGAAIGKCGKEK---IFQAYAQLELRLGNIDRCRQIHAKFIETYPL 106
F +RQ + A + A+ ++ + +A+LE + GN ++ + + K + TYP
Sbjct 1679 FLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDKVLTTYPK 1738
Query 107 NPKAWIQMIELEVLAEETERARA----ICEIAVSMEQMEMPELIWKAYIDMEVNWGALDR 162
W I+L V + R + ++VS++++ + +K Y++ E G +
Sbjct 1739 RTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKI---KFFFKRYLEYEKKNGTPET 1795
Query 163 ARALYERLLDKTQHVNA 179
+ + ++ L+ + A
Sbjct 1796 IQVVKQKALEYVESKGA 1812
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query 113 QMIELEVLAEETERARAICEIA---VSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
Q + + A + E+ARA+ E A +S + + IW A +++E +G D + ++ER
Sbjct 1569 QYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFER 1628
Query 170 LL 171
+
Sbjct 1629 AI 1630
> mmu:67439 Xab2, 0610041O14Rik, AV025587; XPA binding protein
2; K12867 pre-mRNA-splicing factor SYF1
Length=855
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 15/174 (8%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLN---LERA 60
I I+YA+F E + K + YE+ + + K + + +W+ ++ I + LERA
Sbjct 520 IVINYAMFLE-EHKYFEESFKAYERGISLF--KWPNVSDIWSTYLTKFISRYGGRKLERA 576
Query 61 RKIFGAAIGKCGKE---KIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
R +F A+ C + ++ YAQLE G ++ + T + P M +
Sbjct 577 RDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDR--ATRAVEPAQQYDMFNI 634
Query 118 EV--LAE--ETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALY 167
+ AE R I + A+ + E + + DME G +DRARA+Y
Sbjct 635 YIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+++A F E + +D R + EKA +V ++ A +W E+R N + A K+
Sbjct 397 LWVAFAKFYEDNGQ-LDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKL 455
Query 64 FGAAIGKCGKE------------------KIFQAYAQLELRLGNIDRCRQIHAKFIETYP 105
A + K++ A LE LG + ++ + ++
Sbjct 456 LRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRI 515
Query 106 LNPKAWIQ---MIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVN-WGA-- 159
P+ I +E EE+ +A E +S+ + IW Y+ ++ +G
Sbjct 516 ATPQIVINYAMFLEEHKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFISRYGGRK 572
Query 160 LDRARALYERLLD 172
L+RAR L+E+ LD
Sbjct 573 LERARDLFEQALD 585
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 11/171 (6%)
Query 4 IWISY--ALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAK-LWTLFVAFEIRQLNLERA 60
IW +Y + ++R R ++E+AL+ P K +AK L+ L+ E A
Sbjct 556 IWSTYLTKFISRYGGRKLERARDLFEQALDGCPPK---YAKTLYLLYAQLEEEWGLARHA 612
Query 61 RKIFGAA---IGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNP--KAWIQMI 115
++ A + + +F Y + + + R I+ K IE + ++
Sbjct 613 MAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFA 672
Query 116 ELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARAL 166
++E E +RARAI + W+ + D EV G D R +
Sbjct 673 DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREM 723
> mmu:328110 Prpf39, FLJ11128, MGC37077, Srcs1; PRP39 pre-mRNA
processing factor 39 homolog (yeast); K13217 pre-mRNA-processing
factor 39
Length=665
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query 78 QAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIE-----LEVLAEETERA-RAIC 131
+ YA LE R NI + +++ + ++ PL+ WI I L+ +ET R
Sbjct 131 KKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDQETNTTIRGTF 190
Query 132 EIAVSMEQMEM-PELIWKAYIDMEVNWGALDRARALYERLL 171
E AV + + +W+ YI+ E G L A+Y+R+L
Sbjct 191 EHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRIL 231
> tpv:TP01_0797 hypothetical protein; K12855 pre-mRNA-processing
factor 6
Length=1032
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 0/120 (0%)
Query 58 ERARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
+RARK+ A +C K++ QLE +L N ++ ++ K +E +P K W+ +L
Sbjct 664 DRARKLLEKARTRCNTPKVWMKSVQLERQLKNYEKALELVDKALEIHPYFDKLWMISGQL 723
Query 118 EVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDKTQHV 177
++ + A +E +W I++++ +ARAL E +K + +
Sbjct 724 KLEKHPKDVEGATLTYKQGVETCPWSVNLWLLSIELQIELKEFAKARALVETAKNKIRTI 783
> hsa:56949 XAB2, DKFZp762C1015, HCNP, HCRN, NTC90, SYF1; XPA
binding protein 2; K12867 pre-mRNA-splicing factor SYF1
Length=855
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 15/174 (8%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLN---LERA 60
I I+YA+F E + K + YE+ + + K + + +W+ ++ I + LERA
Sbjct 520 IVINYAMFLE-EHKYFEESFKAYERGISLF--KWPNVSDIWSTYLTKFIARYGGRKLERA 576
Query 61 RKIFGAAIGKCGKE---KIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
R +F A+ C + ++ YAQLE G ++ + T + P M +
Sbjct 577 RDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYER--ATRAVEPAQQYDMFNI 634
Query 118 EV--LAE--ETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALY 167
+ AE R I + A+ + E + + DME G +DRARA+Y
Sbjct 635 YIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 28/193 (14%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+++A F E + +D R + EKA +V ++ A +W E+R N + A ++
Sbjct 397 LWVAFAKFYEDNGQ-LDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRL 455
Query 64 FGAAIGKCGKE------------------KIFQAYAQLELRLGNIDRCRQIHAKFIETYP 105
A + K++ A LE LG + ++ + ++
Sbjct 456 LRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRI 515
Query 106 LNPKAWIQ---MIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEV-NWGA-- 159
P+ I +E EE+ +A E +S+ + IW Y+ + +G
Sbjct 516 ATPQIVINYAMFLEEHKYFEESFKA---YERGISLFKWPNVSDIWSTYLTKFIARYGGRK 572
Query 160 LDRARALYERLLD 172
L+RAR L+E+ LD
Sbjct 573 LERARDLFEQALD 585
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 11/166 (6%)
Query 4 IWISY--ALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAK-LWTLFVAFEIRQLNLERA 60
IW +Y + ++R R ++E+AL+ P K +AK L+ L+ E A
Sbjct 556 IWSTYLTKFIARYGGRKLERARDLFEQALDGCPPK---YAKTLYLLYAQLEEEWGLARHA 612
Query 61 RKIF---GAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNP--KAWIQMI 115
++ A+ + +F Y + + + R I+ K IE + ++
Sbjct 613 MAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFA 672
Query 116 ELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALD 161
++E E +RARAI + W+ + D EV G D
Sbjct 673 DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNED 718
> dre:100334796 Pre-mRNA-processing factor 39-like
Length=707
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query 77 FQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEV------LAEETERARAI 130
++ +A LE R G+ ++ ++ + +++ PL+ WI I L + L E T R R++
Sbjct 119 WKKFADLERRAGHNEKAEEVCEQGLKSIPLSVDLWIHYINLLLGTLNMNLPESTRRIRSV 178
Query 131 CEIAVSMEQMEM-PELIWKAYIDMEVNWGALDRARALYERLLD-KTQHVNA 179
E AVS + + +W Y + E L +Y+R+L T+H N
Sbjct 179 FEEAVSAAGWDFHSDRLWDLYAEWEKEQNNLTFMTRIYDRVLSVPTRHYNT 229
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query 88 GNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIW 147
G++ RQ F+ YPL W + +LE A E+A +CE ++ + + +W
Sbjct 96 GHMRASRQALNAFLLRYPLCYGYWKKFADLERRAGHNEKAEEVCEQG--LKSIPLSVDLW 153
Query 148 KAYIDM 153
YI++
Sbjct 154 IHYINL 159
> hsa:55015 PRPF39, FLJ11128, FLJ20666, FLJ45460, MGC149842, MGC149843;
PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae);
K13217 pre-mRNA-processing factor 39
Length=669
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query 78 QAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL--EVL----AEETERARAIC 131
+ YA LE R NI +++ + ++ PL+ WI I E L E R
Sbjct 133 KKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTF 192
Query 132 EIAVSMEQMEM-PELIWKAYIDMEVNWGALDRARALYERLL 171
E AV + + +W+ YI+ E G L A+Y+R+L
Sbjct 193 EHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL 233
> cpv:cgd5_920 Pre-mRNA splicing factor Pro1/Prp6. HAT repeat
protein ; K12855 pre-mRNA-processing factor 6
Length=923
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query 3 YIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARK 62
Y WI +A FEE + + ++ V +K+L+ P K LW + N E AR
Sbjct 538 YFWIKWANFEE-KYGNFEKVDHVLQKSLKNCPDKQI----LWLKAAQNQSANGNAEIARL 592
Query 63 IF--GAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELE 118
I G + KE+I A+LEL G I+R + I + P + + W++ I+LE
Sbjct 593 ILSKGYSSSLNDKEEIVLEAARLELSQGEIERAKIILERERTNSP-SVQIWVESIKLE 649
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query 52 IRQLNLERARKIFGAAIGKC-GKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKA 110
I+ N+ AR +F ++ KE + +A E + GN ++ + K ++ P
Sbjct 514 IKSNNIISARAMFESSADMFKSKEYFWIKWANFEEKYGNFEKVDHVLQKSLKNCPDKQIL 573
Query 111 WIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
W++ + + E AR I S + E++ +A +E++ G ++RA+ + ER
Sbjct 574 WLKAAQNQSANGNAEIARLILSKGYSSSLNDKEEIVLEA-ARLELSQGEIERAKIILER 631
> ath:AT5G28740 transcription-coupled DNA repair protein-related;
K12867 pre-mRNA-splicing factor SYF1
Length=917
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 22/179 (12%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVV--PHKLFSFAKLWTLFVAFEIR---QLNLE 58
I ++YA E + K + VYE+ +++ PH +W ++ ++ + LE
Sbjct 551 IIMNYAFLLE-ENKYFEDAFKVYERGVKIFKYPH----VKDIWVTYLTKFVKRYGKTKLE 605
Query 59 RARKIFGAAIGKCGKEKI---FQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMI 115
RAR++F A+ + + + YA+LE G R +++ + + P K + I
Sbjct 606 RARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKLEMYEI 665
Query 116 ELEVLAE--ETERARAICEIAVSMEQMEMP----ELIWKAYIDMEVNWGALDRARALYE 168
+ AE R R I E A+ + +P +++ + ++E + G +DRARALY+
Sbjct 666 YISRAAEIFGVPRTREIYEQAI---ESGLPHKDVKIMCIKFAELERSLGEIDRARALYK 721
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 61/230 (26%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+++A E KD+ R +++KA++V + A +W + E+R N + A ++
Sbjct 425 LWVAFAKLYE-NHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALEL 483
Query 64 FGAA-----------IGKCGKE----------KIFQAYAQLELRLGNIDRCRQIHAKFIE 102
A + G E +++ Y LE LG ++ R ++ K ++
Sbjct 484 MRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEKILD 543
Query 103 ------------------------------------TYPLNPKAWIQMIELEVL---AEE 123
YP W+ + V +
Sbjct 544 LRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYGKTK 603
Query 124 TERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYERLLDK 173
ERAR + E AVSM + ++ Y +E ++G RA +YE K
Sbjct 604 LERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKK 653
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query 4 IWISY--ALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
IW++Y + ++R R ++E A+ + P + L+ + E +RA
Sbjct 587 IWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSD--AVRTLYLQYAKLEEDYGLAKRAM 644
Query 62 KIFGAAIGKCG---KEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMI--- 115
K++ A K K ++++ Y + + R R+I+ + IE+ + I I
Sbjct 645 KVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFA 704
Query 116 ELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARAL 166
ELE E +RARA+ + + W + + EV G D R +
Sbjct 705 ELERSLGEIDRARALYKYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREM 755
> pfa:PF11_0108 U5 snRNP-associated protein, putative; K12855
pre-mRNA-processing factor 6
Length=1329
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W++ A E K D V +A++ PH + LW + + +++AR+I
Sbjct 692 LWLALANLELTHGKRED-VDEVLHRAVQSCPHS----SVLWLMLAKQKWLNNEIDKAREI 746
Query 64 FGAA-IGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAE 122
+ I E+I A +LE DR R + K PK W+Q ++LE L
Sbjct 747 LAESFIHNQNTEEISLAAIKLERENNEFDRARFLLKK-SRVQCNTPKIWMQSVQLERLLR 805
Query 123 ETERARAICEIAVSMEQ 139
+ A+ + A+ + +
Sbjct 806 NYKEAKMLAHEALKIHK 822
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 7/167 (4%)
Query 5 WISYALFEEL-QAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
WI +A EE Q+K C S+ + + L + +++ I ++ AR +
Sbjct 622 WIKFA--EECEQSKFTHTCESIIRNTMHIGVETL-NKKRIYKQDAQNCIHNKSIHTARTL 678
Query 64 FGAAIGKCG-KEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAE 122
+ A+ K+ ++ A A LEL G + ++ + +++ P + W+ + + + L
Sbjct 679 YNEALKIFKTKKSLWLALANLELTHGKREDVDEVLHRAVQSCPHSSVLWLMLAKQKWLNN 738
Query 123 ETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
E ++AR I +A S + E I A I +E DRAR L ++
Sbjct 739 EIDKAREI--LAESFIHNQNTEEISLAAIKLERENNEFDRARFLLKK 783
> bbo:BBOV_IV000660 21.m02991; XBA-binding protein 2; K12867 pre-mRNA-splicing
factor SYF1
Length=796
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 44/179 (24%)
Query 2 IYIWISYALFEELQAKDMDRCRSVYEKALEVV-PHKLFS-FAKLWTLFVAFEIRQLNLER 59
+Y W+ Y +L D+++ + ++E+A+ V P K +LWT + ++ ++++
Sbjct 400 VYNWLHYV---KLVENDINKTQEIFEQAVATVDPRKSVGRVTELWTSYASYFENHVDVDA 456
Query 60 ARKIFGAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEV 119
A +IF A+ GN KF++ W +E+ +
Sbjct 457 ADRIFEKAVE------------------GNY--------KFVDDLA---SVWCAWVEMHI 487
Query 120 LAEETERARAICEIAVSMEQMEMPELI----------WKAYIDMEVNWGALDRARALYE 168
+RA + AV + + P + W +D+E N G + ARA ++
Sbjct 488 RHNNLKRALELSRQAVDVRNKKEPNYVEQRLYRSVKLWSLCLDLEQNLGTIATARATFD 546
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 25/183 (13%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVV--PHKLFSFAKLWTLFVAFEIRQLNLERAR 61
I +++A++ E + K + S +EK + + P + + T FV R LER R
Sbjct 558 IALNFAMYLE-EHKYFEAAFSAFEKCVALFKWPQLYYLYLPYLTKFVK-RYRGTKLERTR 615
Query 62 KIFGAAIGKCGKEK------------IFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPK 109
+IF + G+E ++ YA +E G + RC I + +
Sbjct 616 EIFDQCLHS-GRESSTGDVPAQYVKYLYFLYAHMEEEFGLVRRCLGILKDAAKCAAKEDQ 674
Query 110 AWIQMIELEVLAEETE-----RARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRAR 164
+ MI+L +A+ E + R I + + E+ + + YI ME G +DRAR
Sbjct 675 --MTMIKL-YIAKTAEFYGIVQTRNIYQECLEFVDDEIARELCEMYIQMERGLGEIDRAR 731
Query 165 ALY 167
A++
Sbjct 732 AIF 734
> xla:100036801 xab2; XPA binding protein 2; K12867 pre-mRNA-splicing
factor SYF1
Length=838
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLN---LERA 60
I I+YA+F E + + YE+ + + + + +W+ +++ I + LERA
Sbjct 511 IVINYAMFLE-EHNYFEESFKAYERGIALF--RWPNVYDIWSTYLSKFIARYGGKKLERA 567
Query 61 RKIFGAAIGKCGKE---KIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL 117
R +F ++ C ++ IF YA+LE G ++ + + + + I +
Sbjct 568 RDLFEQSLDGCPRKFAKNIFLLYAKLEEEHGLARHAMALYERATQAVETGEQYEMFNIYI 627
Query 118 EVLAE--ETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALY 167
+ AE R I E A+ + E + + DME G +DRARA+Y
Sbjct 628 KRAAEIYGVTHTRTIYERAIELLPDEQSREMCLRFADMECKLGEIDRARAIY 679
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKI 63
+W+S+A F E + ++ R++ ++A V + A +W F E+R N + A KI
Sbjct 388 LWVSFAKFYEENGQ-IEDARAILQRATLVQYTHVDDLASVWCQFGEMELRHENYDAALKI 446
Query 64 FGAAIGKCGKE------------------KIFQAYAQLELRLGNIDRCRQIHAKFIETYP 105
A ++ +++ A LE LG + ++ + I+ +
Sbjct 447 LRKATAVPARKAEYFDSSEPVQNRLYKSLRVWSMLADLEESLGTFKSTKAVYDRIIDLHI 506
Query 106 LNPKAWIQ---MIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEV-NWGA-- 159
P+ I +E EE+ +A E +++ + IW Y+ + +G
Sbjct 507 ATPQIVINYAMFLEEHNYFEESFKA---YERGIALFRWPNVYDIWSTYLSKFIARYGGKK 563
Query 160 LDRARALYERLLD 172
L+RAR L+E+ LD
Sbjct 564 LERARDLFEQSLD 576
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query 4 IWISY--ALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAK-LWTLFVAFEIRQLNLERA 60
IW +Y K ++R R ++E++L+ P K FAK ++ L+ E A
Sbjct 547 IWSTYLSKFIARYGGKKLERARDLFEQSLDGCPRK---FAKNIFLLYAKLEEEHGLARHA 603
Query 61 RKIF---GAAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYP--LNPKAWIQMI 115
++ A+ + ++F Y + + + R I+ + IE P + + ++
Sbjct 604 MALYERATQAVETGEQYEMFNIYIKRAAEIYGVTHTRTIYERAIELLPDEQSREMCLRFA 663
Query 116 ELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARAL 166
++E E +RARAI + + W+ + D EV G D R +
Sbjct 664 DMECKLGEIDRARAIYSYCSQICDPRLTAGFWQTWRDFEVRHGNEDTLREM 714
> pfa:PFL1735c RNA-processing protein, putative; K12867 pre-mRNA-splicing
factor SYF1
Length=1031
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 24/171 (14%)
Query 15 QAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAF------EIRQLNLERARKIFGAAI 68
+ K + VYEKAL V F + ++ ++V + + N+ R +F AI
Sbjct 772 EKKYFNESFKVYEKALSV-----FHYPYVYPIYVNYINKYIQRYKDKNISYVRDLFKQAI 826
Query 69 -GKCGK--------EKIFQAYAQLELRLGNIDRCRQIHAK---FIETYPLNPKAWIQMIE 116
G K + IF YA E G I + I+ + F+E P K + I
Sbjct 827 YGNDNKTFIPKEFAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEE-PDKIKFYKIFIS 885
Query 117 LEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALY 167
A ++AR E A+ + + YIDME +R RALY
Sbjct 886 KVSRAYGIQKAREAFEEAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALY 936
> bbo:BBOV_IV009720 23.m06014; u5 snRNP-associated subunit, putaitve;
K12855 pre-mRNA-processing factor 6
Length=1040
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query 48 VAFEIRQLNLERARKIFGAAIGKCGKEKIFQAYAQLELRLGN----IDRCRQIHAKFIET 103
V E ERAR + + +CG KI+ QLE +LGN ID C Q +E
Sbjct 658 VKLEREHDEFERARALLERSRKQCGTRKIWMQSIQLERQLGNYSVAIDLCDQA----LEI 713
Query 104 YPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRA 163
+P K W+ +L + E + A AI +Q +W ++ V +A
Sbjct 714 HPYFDKLWMIAGQLRLELPEPDVATAINIFKDGADQCPWSVGLWLLALESLVRDNEHAKA 773
Query 164 RALYE 168
RAL +
Sbjct 774 RALVD 778
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query 60 ARKIFGAAIGKC-GKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIELE 118
AR I+ +A+ + K+ ++ A A+LE R G + + ++ + P + W+ + +
Sbjct 568 ARAIYRSALEQMKTKKSLWLALAELETRHGKPEDVDDVLSQATKYCPNSDILWLMAAKHK 627
Query 119 VLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
+ + E ARAI A S + M++ E I A + +E +RARAL ER
Sbjct 628 WIQGDVESARAILADAYS-KNMDV-ESISLAAVKLEREHDEFERARALLER 676
> cpv:cgd7_970 Syf1p. protein with 8 HAT domains ; K12867 pre-mRNA-splicing
factor SYF1
Length=1020
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query 94 RQIHAKFIETYPLNPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPEL------IW 147
R + +IE Y L W + IE+E+ E A + ++ M + + ++ IW
Sbjct 565 RSLSEDYIEDYSL---IWTEWIEMELRFGNFEEALNLSRRSICMAKEQKSKITLRNGRIW 621
Query 148 KAYIDMEVNWGALDRARALYERLLD 172
D+E+++G L+ +RAL E L +
Sbjct 622 NLAADLEMSFGTLESSRALIEDLFE 646
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
Query 127 ARAICEIAVSMEQMEMPELIWKAYIDMEVNWGALDRARALYER 169
AR I E ++S + +E LIW +I+ME+ +G + A L R
Sbjct 559 ARDIFERSLSEDYIEDYSLIWTEWIEMELRFGNFEEALNLSRR 601
> sce:YMR229C RRP5; RNA binding protein with preference for single
stranded tracts of U's involved in synthesis of both 18S
and 5.8S rRNAs; component of both the ribosomal small subunit
(SSU) processosome and the 90S preribosome; K14792 rRNA
biogenesis protein RRP5
Length=1729
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEVVPHK--------------------------- 36
+W++Y F+ LQ ++++ R + E+AL+ + +
Sbjct 1477 VWMNYMAFQ-LQLSEIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGTEETLEE 1535
Query 37 LFSFAKLWT--------LFVAFEIRQLNLERARKIFGAAIGKCGKEK--IFQAYAQLELR 86
+FS A + L +EI + ++A ++F A K G EK I+ ++ +
Sbjct 1536 VFSRACQYMDSYTIHTKLLGIYEISE-KFDKAAELFKATAKKFGGEKVSIWVSWGDFLIS 1594
Query 87 LGNIDRCRQIHAKFIETYPLNPKAWI--QMIELEVLAEETERARAICEIAVSMEQMEMPE 144
R I ++ P + + +LE + ER R++ E V+ + P+
Sbjct 1595 HNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVA----DAPK 1650
Query 145 LI--WKAYIDMEVNWGALDRARALYERLLDK 173
I W Y+D EV + L+ER++ K
Sbjct 1651 RIDLWNVYVDQEVKAKDKKKVEDLFERIITK 1681
> cel:C50F2.3 hypothetical protein; K12867 pre-mRNA-splicing factor
SYF1
Length=855
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query 4 IWISY--ALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERAR 61
IW +Y + K ++R R ++E+ LE P + ++ L+ E A
Sbjct 560 IWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKY--IFLLYAKLEEEHGLARHAL 617
Query 62 KIFG---AAIGKCGKEKIFQAYAQLELRLGNIDRCRQIHAKFIETYPLNPKAWIQM--IE 116
I+ + + + ++ Y + + I +CR I + I P + + + +
Sbjct 618 SIYNRACSGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQ 677
Query 117 LEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVNWG 158
LE E +RARAI A + ++ W + + EV G
Sbjct 678 LETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNFEVAHG 719
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 49/208 (23%)
Query 4 IWISYALFEELQAKDMDRCRSVYEKALEV---VPHKLFSFA------------------- 41
+W YA +EE ++ CR VY+K +E+ P + ++A
Sbjct 490 LWAMYADYEEC-CGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKG 548
Query 42 ----------KLWTLFVAFEIRQLN---LERARKIFGAAIGKCGKEK---IFQAYAQLEL 85
+W ++ I++ LERAR +F + C IF YA+LE
Sbjct 549 IALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEE 608
Query 86 RLGNIDRCRQIHAKFIETYPLNPKAWIQMIELEVLAE--ETERARAICEIAVSMEQMEMP 143
G I+ + + I ++ + E + R I E A+S E+P
Sbjct 609 EHGLARHALSIYNRACSGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAIS----ELP 664
Query 144 ELIWKA----YIDMEVNWGALDRARALY 167
E +A Y +E G +DRARA+Y
Sbjct 665 EDKSRAMSLRYAQLETTVGEIDRARAIY 692
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query 3 YIWISYALFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARK 62
YI++ YA EE S+Y +A V ++ +++ + + R
Sbjct 598 YIFLLYAKLEEEHGL-ARHALSIYNRACSGVDRA--DMHSMYNIYIKKVQEMYGIAQCRP 654
Query 63 IFGAAIGKCGKEK---IFQAYAQLELRLGNIDRCRQI--HAKFIETYPLNPKAWIQMIEL 117
IF AI + ++K + YAQLE +G IDR R I HA I ++ K W
Sbjct 655 IFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNF 714
Query 118 EVLAEETERARAICEIAVSME 138
EV R + + S+E
Sbjct 715 EVAHGNEATVRDMLRVRRSVE 735
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query 4 IWISYA-LFEELQAKDMDRCRSVYEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARK 62
+WI A L+E+ D+D R +E A+ + A +W + E++ + A
Sbjct 403 LWIGLAKLYED--NGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALT 460
Query 63 IFGAA--IGKCGKEKIFQA--------------YAQLELRLGNIDRCRQIHAKFIETYPL 106
+ A + K G + Q+ YA E G ++ CR+++ K IE
Sbjct 461 VMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVA 520
Query 107 NPKAWIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKAYIDMEVN-WGA--LDRA 163
+P+ + E E A E +++ + IW Y+ + +G L+RA
Sbjct 521 SPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERA 580
Query 164 RALYERLLDKTQHVNA 179
R L+E+ L+ +A
Sbjct 581 RDLFEQCLENCPPTHA 596
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query 43 LWTLFVAFEIRQLNLERARKIFGAAIGKCGK----EKIFQAYAQLELR 86
LW + IR ERAR ++ AI K +++ AYA E R
Sbjct 265 LWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEER 312
> bbo:BBOV_IV005070 23.m05737; hypothetical protein; K14792 rRNA
biogenesis protein RRP5
Length=383
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 22/143 (15%)
Query 41 AKLWTLFVAFEIRQLNLERARKIFGAAIGKCGKEKI-FQAYAQ-LELRLGNI-------D 91
A LW ++AF +R +LE AR++ + G E+I F+A ++ L L + NI D
Sbjct 122 ASLWIEYMAFHLRNGSLEGARQVV-----RRGLERIDFRAISERLTLWVANINMECLYGD 176
Query 92 RCRQIHAKFIETYPLN-PKA-WIQMIELEVLAEETERARAICEIAVSMEQMEMPELIWKA 149
R +++ F E+ N PK +++MI + V + A +CE + +++ + W+A
Sbjct 177 RVKEV---FQESLRFNDPKTMYLKMISIFVKNDRLSDAIEVCERGI--KKLGKSKKFWQA 231
Query 150 YIDMEV-NWGALDRARALYERLL 171
Y+ + + + AR +Y R L
Sbjct 232 YLRLLFEHVKDFEEARKVYNRCL 254
> xla:734636 prpf39.1, MGC115228, prpf39; PRP39 pre-mRNA processing
factor 39 homolog, gene 1; K13217 pre-mRNA-processing
factor 39
Length=641
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query 26 YEKALEVVPHKLFSFAKLWTLFVAFEIRQLNLERARKIFGAAIGK---CGKEKIFQAYAQ 82
Y K+++ P WT + + ++ +L ARK F A + C ++ YA
Sbjct 59 YWKSVQAYPEDF----NTWTYLLQYVEQENHLFAARKAFDAFLAHYPYCYG--YWKKYAD 112
Query 83 LELRLGNIDRCRQIHAKFIETYPLNPKAWIQMIEL--EVL----AEETERARAICEIAVS 136
LE + NI +++ + I+ L+ W+ + E L E + R E AV
Sbjct 113 LEKKNNNILEADEVYRRGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGTFEHAVV 172
Query 137 MEQMEM-PELIWKAYIDMEVNWGALDRARALYERLL 171
++ + +W+ YI+ E G L ++Y RLL
Sbjct 173 SAGLDFRSDKLWEMYINWETEQGNLSGVTSIYSRLL 208
Lambda K H
0.326 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 4795148792
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40