bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_4659_orf1
Length=98
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_016400 meiotic recombination protein DMC1-like prot... 124 8e-29
dre:553953 dmc1, MGC136628, zgc:136628; DMC1 dosage suppressor... 110 1e-24
pfa:MAL8P1.76 meiotic recombination protein dmc1-like protein;... 109 2e-24
ath:AT3G22880 DMC1; DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); AT... 107 9e-24
hsa:11144 DMC1, DMC1H, HsLim15, LIM15, MGC150472, MGC150473, d... 107 1e-23
mmu:13404 Dmc1, Dmc1h, MGC151144, Mei11, sgdp; DMC1 dosage sup... 107 1e-23
cpv:cgd7_1690 meiotic recombination protein DMC1-like protein ... 97.8 7e-21
tpv:TP04_0170 meiotic recombination protein DMC1; K04482 DNA r... 89.4 2e-18
sce:YER179W DMC1, ISC2; Dmc1p; K10872 meiotic recombination pr... 83.6 1e-16
xla:380251 rad51-b, MGC130792, MGC52570, brcc5, rad51, rad51a,... 76.6 2e-14
xla:397726 rad51-a, MGC84850, brcc5, rad51, rad51a, reca, xrad... 76.6 2e-14
mmu:19361 Rad51, AV304093, Rad51a, Reca; RAD51 homolog (S. cer... 76.6 2e-14
hsa:5888 RAD51, BRCC5, HRAD51, HsRad51, HsT16930, RAD51A, RECA... 76.3 2e-14
dre:406487 rad51, wu:fb38e12, zgc:77754; RAD51 homolog (RecA h... 75.5 4e-14
ath:AT5G20850 ATRAD51; ATP binding / DNA binding / DNA-depende... 71.6 5e-13
cel:Y43C5A.6 rad-51; RADiation sensitivity abnormal/yeast RAD-... 68.2 7e-12
tpv:TP04_0230 DNA repair protein Rad51; K04482 DNA repair prot... 67.4 1e-11
bbo:BBOV_II003540 18.m06297; Rad51 protein; K04482 DNA repair ... 65.5 4e-11
cpv:cgd5_410 Rad51 ; K04482 DNA repair protein RAD51 65.1 6e-11
sce:YER095W RAD51, MUT5; Rad51p; K04482 DNA repair protein RAD51 64.7 8e-11
pfa:PF11_0087 rad51; Rad51 homolog; K04482 DNA repair protein ... 60.1 2e-09
tgo:TGME49_072900 DNA repair protein, putative (EC:3.6.3.8); K... 47.4 1e-05
dre:450081 rad51c, zgc:101596; rad51 homolog C (S. cerevisiae)... 43.1 2e-04
hsa:5890 RAD51L1, MGC34245, R51H2, RAD51B, REC2, hREC2; RAD51-... 42.7 2e-04
ath:AT2G45280 ATRAD51C; ATP binding / damaged DNA binding / pr... 38.9 0.004
mmu:19363 Rad51l1, AI553500, R51H2, Rad51b, mREC2; RAD51-like ... 38.5 0.005
ath:AT5G57450 XRCC3; XRCC3; ATP binding / damaged DNA binding ... 36.2 0.024
dre:541414 xrcc3, im:7142103, si:dkey-11b8.1, zgc:101608; X-ra... 34.3 0.087
sce:YDR004W RAD57; Protein that stimulates strand exchange by ... 33.5 0.17
dre:406721 rad51l1, wu:fd07f04, zgc:56581; RAD51-like 1 (S. ce... 33.1 0.20
mmu:114714 Rad51c, R51H3, Rad51l2; RAD51 homolog c (S. cerevis... 33.1 0.21
ath:AT5G53050 hydrolase, alpha/beta fold family protein 32.0 0.53
bbo:BBOV_I002960 19.m02356; hypothetical protein 29.6 2.7
xla:100316925 prom1, ac133, cd133, cord12, mcdr2, prom-3, prom... 29.3 3.6
xla:399213 lsf, Tcfcp2; transcription factor LSF 28.9 3.8
xla:734455 rcc2, MGC115292; regulator of chromosome condensati... 28.9 4.4
dre:406455 rcc2, td-60, wu:fb36a03, zgc:77115; regulator of ch... 28.5 4.8
mmu:108911 Rcc2, 2610510H01Rik, 2610529N02Rik, AA536646, AA675... 28.5 5.0
hsa:55920 RCC2, DKFZp762N0610, KIAA1470, TD-60; regulator of c... 28.5 5.2
xla:734497 tfcp2, MGC114652, lbp1c, lsf, lsf1d, sef, tfcp2c; t... 28.5 5.8
xla:100379090 tshz1a, Xtsh1a, tsh1, tshz1-a; teashirt zinc fin... 28.5 6.1
dre:751690 ccdc126, MGC153694, ccdc26, si:ch211-155k24.3, zgc:... 28.1 7.7
dre:404608 MGC77165; zgc:77165; K10871 RAD51-like protein 3 27.7
> tgo:TGME49_016400 meiotic recombination protein DMC1-like protein,
putative (EC:2.7.11.1); K10872 meiotic recombination
protein DMC1
Length=349
Score = 124 bits (311), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/70 (78%), Positives = 68/70 (97%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
+++IVDSI+ALFRVDFSGRGELADRQQKLN+ML+ ++K++EQYN++V+LTNQVMSDPGGG
Sbjct 227 SVLIVDSIIALFRVDFSGRGELADRQQKLNRMLSIMMKLAEQYNLAVMLTNQVMSDPGGG 286
Query 70 LTFVANPTKP 79
LTF ANPTKP
Sbjct 287 LTFTANPTKP 296
> dre:553953 dmc1, MGC136628, zgc:136628; DMC1 dosage suppressor
of mck1 homolog, meiosis-specific homologous recombination
(yeast); K10872 meiotic recombination protein DMC1
Length=342
Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 63/73 (86%), Gaps = 0/73 (0%)
Query 7 GVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDP 66
GV ++I+DSIMALFRVDFSGRGELA+RQQKL +ML+ L K+SE+YNV+V +TNQ+ +DP
Sbjct 217 GVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADP 276
Query 67 GGGLTFVANPTKP 79
G G+TF A+P KP
Sbjct 277 GAGMTFQADPKKP 289
> pfa:MAL8P1.76 meiotic recombination protein dmc1-like protein;
K10872 meiotic recombination protein DMC1
Length=347
Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/70 (65%), Positives = 64/70 (91%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A+++VDSI++LFRVDFSGRGEL++RQQKLNK ++ L K+SEQ+N+++++TNQVMSDPG
Sbjct 225 ALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLSEQFNIAILITNQVMSDPGAT 284
Query 70 LTFVANPTKP 79
+TF+ANP KP
Sbjct 285 MTFIANPMKP 294
> ath:AT3G22880 DMC1; DMC1 (DISRUPTION OF MEIOTIC CONTROL 1);
ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA
binding / nucleoside-triphosphatase/ nucleotide binding /
protein binding; K10872 meiotic recombination protein DMC1
Length=344
Score = 107 bits (267), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query 11 IIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGGL 70
I+IVDSI+ALFRVDF+GRGELADRQQKL +ML+ LIK++E++NV+V +TNQV++DPGGG+
Sbjct 224 ILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGM 283
Query 71 TFVANPTKPG 80
F+++P KP
Sbjct 284 -FISDPKKPA 292
> hsa:11144 DMC1, DMC1H, HsLim15, LIM15, MGC150472, MGC150473,
dJ199H16.1; DMC1 dosage suppressor of mck1 homolog, meiosis-specific
homologous recombination (yeast); K10872 meiotic recombination
protein DMC1
Length=340
Score = 107 bits (266), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 62/73 (84%), Gaps = 0/73 (0%)
Query 7 GVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDP 66
G+ ++I+DSIMALFRVDFSGRGELA+RQQKL +ML+ L K+SE+YNV+V +TNQ+ +DP
Sbjct 215 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADP 274
Query 67 GGGLTFVANPTKP 79
G +TF A+P KP
Sbjct 275 GATMTFQADPKKP 287
> mmu:13404 Dmc1, Dmc1h, MGC151144, Mei11, sgdp; DMC1 dosage suppressor
of mck1 homolog, meiosis-specific homologous recombination
(yeast); K10872 meiotic recombination protein DMC1
Length=340
Score = 107 bits (266), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 62/73 (84%), Gaps = 0/73 (0%)
Query 7 GVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDP 66
G+ ++I+DSIMALFRVDFSGRGELA+RQQKL +ML+ L K+SE+YNV+V +TNQ+ +DP
Sbjct 215 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADP 274
Query 67 GGGLTFVANPTKP 79
G +TF A+P KP
Sbjct 275 GATMTFQADPKKP 287
> cpv:cgd7_1690 meiotic recombination protein DMC1-like protein
; K10872 meiotic recombination protein DMC1
Length=342
Score = 97.8 bits (242), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 60/70 (85%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDSI+ALFR +FSGRGELA+RQQ LNK L+ L K+++Q+N+++V+TN VM+DP GG
Sbjct 220 ALLIVDSIIALFRTEFSGRGELAERQQILNKTLSKLNKLADQFNIAIVMTNHVMADPAGG 279
Query 70 LTFVANPTKP 79
++F+ N KP
Sbjct 280 MSFMPNVAKP 289
> tpv:TP04_0170 meiotic recombination protein DMC1; K04482 DNA
repair protein RAD51
Length=346
Score = 89.4 bits (220), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/70 (61%), Positives = 65/70 (92%), Gaps = 0/70 (0%)
Query 11 IIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGGL 70
++I+DSIM+LFRVD+SGRGELA+RQQ+LNK+L++L+K+++Q+NV++VLTN V+S+P G L
Sbjct 225 LLIIDSIMSLFRVDYSGRGELAERQQRLNKLLSNLLKIAQQFNVAIVLTNHVISEPSGAL 284
Query 71 TFVANPTKPG 80
+F++NP KP
Sbjct 285 SFISNPIKPA 294
> sce:YER179W DMC1, ISC2; Dmc1p; K10872 meiotic recombination
protein DMC1
Length=334
Score = 83.6 bits (205), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 0/75 (0%)
Query 11 IIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGGL 70
+I+VDSIMA FRVD+ GRGEL++RQQKLN+ L L +++E++NV+V LTNQV SDPG
Sbjct 212 LIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASA 271
Query 71 TFVANPTKPGVSRHL 85
F + + + H+
Sbjct 272 LFASADGRKPIGGHV 286
> xla:380251 rad51-b, MGC130792, MGC52570, brcc5, rad51, rad51a,
reca, xrad51; RAD51 homolog (RecA homolog); K04482 DNA repair
protein RAD51
Length=336
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R D+SGRGEL+ RQ L + L L+++++++ V+VV+TNQV++ G
Sbjct 214 ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 273
Query 70 LTFVANPTKP 79
F A+P KP
Sbjct 274 AMFAADPKKP 283
> xla:397726 rad51-a, MGC84850, brcc5, rad51, rad51a, reca, xrad51;
RAD51 homolog (RecA homolog); K04482 DNA repair protein
RAD51
Length=336
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R D+SGRGEL+ RQ L + L L+++++++ V+VV+TNQV++ G
Sbjct 214 ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 273
Query 70 LTFVANPTKP 79
F A+P KP
Sbjct 274 AMFAADPKKP 283
> mmu:19361 Rad51, AV304093, Rad51a, Reca; RAD51 homolog (S. cerevisiae);
K04482 DNA repair protein RAD51
Length=339
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R D+SGRGEL+ RQ L + L L+++++++ V+VV+TNQV++ G
Sbjct 217 ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 276
Query 70 LTFVANPTKP 79
F A+P KP
Sbjct 277 AMFAADPKKP 286
> hsa:5888 RAD51, BRCC5, HRAD51, HsRad51, HsT16930, RAD51A, RECA;
RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae); K04482
DNA repair protein RAD51
Length=340
Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R D+SGRGEL+ RQ L + L L+++++++ V+VV+TNQV++ G
Sbjct 218 ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 277
Query 70 LTFVANPTKP 79
F A+P KP
Sbjct 278 AMFAADPKKP 287
> dre:406487 rad51, wu:fb38e12, zgc:77754; RAD51 homolog (RecA
homolog, E. coli) (S. cerevisiae); K04482 DNA repair protein
RAD51
Length=338
Score = 75.5 bits (184), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R D+SGRGEL+ RQ L + L L+++++++ V+VV+TNQV++ G
Sbjct 216 ALLIVDSATALYRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQVDGA 275
Query 70 LTFVANPTKP 79
F A+P KP
Sbjct 276 AMFSADPKKP 285
> ath:AT5G20850 ATRAD51; ATP binding / DNA binding / DNA-dependent
ATPase/ damaged DNA binding / nucleoside-triphosphatase/
nucleotide binding / protein binding / sequence-specific DNA
binding; K04482 DNA repair protein RAD51
Length=342
Score = 71.6 bits (174), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R DFSGRGEL+ RQ L K L SL K+++++ V+VV+TNQV++ G
Sbjct 220 ALLIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGS 279
Query 70 LTFVANPTKP 79
F KP
Sbjct 280 ALFAGPQFKP 289
> cel:Y43C5A.6 rad-51; RADiation sensitivity abnormal/yeast RAD-related
family member (rad-51); K04482 DNA repair protein
RAD51
Length=395
Score = 68.2 bits (165), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVD A FR +++GRG+LA+RQ KL+ L L K++++Y V+V++TNQV++ GG
Sbjct 271 AVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGG 330
Query 70 LT-FVANPTKP 79
+ F A+ KP
Sbjct 331 ASMFQADAKKP 341
> tpv:TP04_0230 DNA repair protein Rad51; K04482 DNA repair protein
RAD51
Length=343
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS +L+R D+SGRGELA RQ L K L +L ++++ + V+VV+TNQV++
Sbjct 220 ALLIVDSATSLYRSDYSGRGELASRQMHLCKFLRALQRIADTFGVAVVITNQVVAKVDAM 279
Query 70 LTFVANPTKP 79
TF N P
Sbjct 280 STFFGNDKLP 289
> bbo:BBOV_II003540 18.m06297; Rad51 protein; K04482 DNA repair
protein RAD51
Length=346
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 0/76 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
A++IVDS AL+R D++GRGELA RQ L K +L ++++ Y V+VV+TNQVM+
Sbjct 220 AMLIVDSATALYRTDYTGRGELAARQMSLGKYFRALKRLADIYGVAVVVTNQVMARVDNM 279
Query 70 LTFVANPTKPGVSRHL 85
+F+ K V H+
Sbjct 280 SSFMGGNDKVPVGGHV 295
> cpv:cgd5_410 Rad51 ; K04482 DNA repair protein RAD51
Length=347
Score = 65.1 bits (157), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 43/55 (78%), Gaps = 0/55 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMS 64
A++IVDS AL+R +++GRGELA RQ L + L +L K+++ + V+VV+TNQVMS
Sbjct 223 ALMIVDSATALYRSEYNGRGELATRQSHLGQFLRALQKIADTFGVAVVITNQVMS 277
> sce:YER095W RAD51, MUT5; Rad51p; K04482 DNA repair protein RAD51
Length=400
Score = 64.7 bits (156), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 54/70 (77%), Gaps = 0/70 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
++I+VDS+MAL+R DFSGRGEL+ RQ L K + +L ++++Q+ V+VV+TNQV++ GG
Sbjct 275 SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGG 334
Query 70 LTFVANPTKP 79
+ F +P KP
Sbjct 335 MAFNPDPKKP 344
> pfa:PF11_0087 rad51; Rad51 homolog; K04482 DNA repair protein
RAD51
Length=350
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 42/55 (76%), Gaps = 0/55 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMS 64
A++IVDS AL+R ++ GRGELA+RQ L + L L ++++ Y V+V++TNQV++
Sbjct 227 ALLIVDSATALYRSEYIGRGELANRQSHLCRFLRGLQRIADIYGVAVIITNQVVA 281
> tgo:TGME49_072900 DNA repair protein, putative (EC:3.6.3.8);
K04482 DNA repair protein RAD51
Length=354
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 0/43 (0%)
Query 10 AIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQY 52
A++IVDS AL+R +++GRGELA RQ L + L L ++++ Y
Sbjct 230 ALLIVDSATALYRSEYTGRGELASRQTHLCRFLRCLQRIADTY 272
> dre:450081 rad51c, zgc:101596; rad51 homolog C (S. cerevisiae);
K10870 RAD51-like protein 2
Length=362
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query 11 IIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG 69
++++DSI FR DF +L+ R + LN + LI+++ Q+ V+VVLTNQ+ + G
Sbjct 221 LVVIDSIAFPFRHDFE---DLSQRTRLLNGLAQQLIQLATQHRVAVVLTNQMTTRVSNG 276
> hsa:5890 RAD51L1, MGC34245, R51H2, RAD51B, REC2, hREC2; RAD51-like
1 (S. cerevisiae); K10869 RAD51-like protein 1
Length=350
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query 11 IIIVDSIMALFRVDFSGR--GELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGG 68
++I+DS+ ++ R +F + G L +R + L + +SL ++E++++ V+LTNQ+ + G
Sbjct 206 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 265
Query 69 GLTFVANPTKPG 80
L A+ P
Sbjct 266 ALASQADLVSPA 277
> ath:AT2G45280 ATRAD51C; ATP binding / damaged DNA binding /
protein binding / recombinase/ single-stranded DNA binding
Length=363
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query 11 IIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMS 64
++IVDSI FR D+ +LA R + L++M +K++++++++VVL NQV +
Sbjct 242 VVIVDSITFHFRQDYD---DLAQRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292
> mmu:19363 Rad51l1, AI553500, R51H2, Rad51b, mREC2; RAD51-like
1 (S. cerevisiae); K10869 RAD51-like protein 1
Length=350
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query 11 IIIVDSIMALFRVDFSGR--GELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGG 68
++IVDSI ++ R +F + G + +R + L K + L ++ ++++ V+LTNQ+ + G
Sbjct 206 LVIVDSIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITTHLSG 265
Query 69 GLTFVANPTKPG 80
L A+ P
Sbjct 266 ALPSQADLVSPA 277
> ath:AT5G57450 XRCC3; XRCC3; ATP binding / damaged DNA binding
/ protein binding / single-stranded DNA binding; K10880 DNA-repair
protein XRCC3
Length=304
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query 11 IIIVDSIMALFRVDFSGR-GELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQV 62
+I++DS+ ALFR +F +L R K+ L +++ ++++++V+TNQV
Sbjct 149 LIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITNQV 201
> dre:541414 xrcc3, im:7142103, si:dkey-11b8.1, zgc:101608; X-ray
repair complementing defective repair in Chinese hamster
cells 3; K10880 DNA-repair protein XRCC3
Length=352
Score = 34.3 bits (77), Expect = 0.087, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query 7 GVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQV 62
G+ +++VDS+ ALFR +F E R + L ++L ++S Y V+ NQV
Sbjct 205 GLVRLLVVDSVAALFRSEFQA-DEAVQRSRHLLAFSSTLHRLSHTYAAPVLCVNQV 259
> sce:YDR004W RAD57; Protein that stimulates strand exchange by
stabilizing the binding of Rad51p to single-stranded DNA;
involved in the recombinational repair of double-strand breaks
in DNA during vegetative growth and meiosis; forms heterodimer
with Rad55p; K10958 DNA repair protein RAD57
Length=460
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query 7 GVSAIIIVDSIMALFRVDFSGRG--ELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMS 64
G ++I+DSI RV+ + E + + L++M L ++ Y++SVV+ NQV
Sbjct 217 GSIKLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGD 276
Query 65 DP 66
P
Sbjct 277 KP 278
> dre:406721 rad51l1, wu:fd07f04, zgc:56581; RAD51-like 1 (S.
cerevisiae); K10869 RAD51-like protein 1
Length=373
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query 9 SAIIIVDSIMALFRVDF--SGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDP 66
+ ++I+DS+ ++ R +F S G L R L + L +S+++ + VVLTNQ+ +
Sbjct 200 AGLVILDSVASVVRKEFDTSLPGNLTHRSNFLGQEAAVLKYLSQEFCIPVVLTNQITTHV 259
Query 67 GGGL 70
G L
Sbjct 260 GEKL 263
> mmu:114714 Rad51c, R51H3, Rad51l2; RAD51 homolog c (S. cerevisiae);
K10870 RAD51-like protein 2
Length=366
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query 11 IIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMS 64
++I+D I FR D +L+ R + LN + +I ++ + ++V+LTNQ+ +
Sbjct 229 LVIIDGIAFPFRHDLE---DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
> ath:AT5G53050 hydrolase, alpha/beta fold family protein
Length=396
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query 23 VDFSGRGELA--DRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPG 67
VD G G L +R +++NK L LIK SE +S TN M PG
Sbjct 287 VDLHG-GHLVSHERTEEVNKALLELIKASEMKKISTDWTNLTMETPG 332
> bbo:BBOV_I002960 19.m02356; hypothetical protein
Length=454
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query 38 LNKMLNSLIKVSEQYNVSVVLTNQVMSDPGG--GLTF-----VANPTKPGVSRHLN 86
+NK+ N+ +++ YN V L+NQ +DP LTF V +PG +LN
Sbjct 260 VNKLANTQKQINHSYNTLVNLSNQYKNDPSALTYLTFRVIDTVLELCEPGCQMYLN 315
> xla:100316925 prom1, ac133, cd133, cord12, mcdr2, prom-3, prominin,
proml1, rp41, stgd4; prominin 1
Length=796
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query 15 DSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGGLTFVA 74
DS AL RG L+D Q K+N LN SV GLTF
Sbjct 235 DSFNALLAEQDIIRGNLSDVQTKINNTLNKCGAKCSSAKSSV-----------DGLTFDV 283
Query 75 NPTKPGVSRHLNR 87
N P S HL R
Sbjct 284 NYKIPDFSDHLKR 296
> xla:399213 lsf, Tcfcp2; transcription factor LSF
Length=506
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query 32 ADRQQKLN--KMLNSLIKVSEQYNVSVVLTNQVMSDPGGGLTFVANPTKPGVSRHLNRTP 89
ADR+QK + KM + E+Y S T P +T+V+N PG + N P
Sbjct 243 ADRKQKTDREKMEKRTPQEKEKYQPSYETTILTECSPWPEITYVSNTPSPGFNSSHNSXP 302
> xla:734455 rcc2, MGC115292; regulator of chromosome condensation
2
Length=513
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query 6 CGVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKV 48
CG++ +I+DS +F F G G L +Q+ ++M+ L+K+
Sbjct 328 CGINHSLILDSQKRVFSWGFGGYGRLGHSEQR-DEMVPRLVKL 369
> dre:406455 rcc2, td-60, wu:fb36a03, zgc:77115; regulator of
chromosome condensation 2
Length=495
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query 6 CGVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKV 48
CG + +++DS +F F G G L +QK ++M+ L+K+
Sbjct 310 CGANHTLVLDSQKRVFSWGFGGYGRLGHAEQK-DEMVPRLVKL 351
> mmu:108911 Rcc2, 2610510H01Rik, 2610529N02Rik, AA536646, AA675016,
Td60, mKIAA1470; regulator of chromosome condensation
2
Length=520
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query 6 CGVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKV 48
CG + +++DS +F F G G L +QK ++M+ L+K+
Sbjct 335 CGANHTLVLDSQKRVFSWGFGGYGRLGHAEQK-DEMVPRLVKL 376
> hsa:55920 RCC2, DKFZp762N0610, KIAA1470, TD-60; regulator of
chromosome condensation 2
Length=522
Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query 6 CGVSAIIIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKV 48
CG + +++DS +F F G G L +QK ++M+ L+K+
Sbjct 337 CGANHTLVLDSQKRVFSWGFGGYGRLGHAEQK-DEMVPRLVKL 378
> xla:734497 tfcp2, MGC114652, lbp1c, lsf, lsf1d, sef, tfcp2c;
transcription factor CP2; K09275 transcription factor CP2 and
related proteins
Length=506
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query 32 ADRQQKLN--KMLNSLIKVSEQYNVSVVLTNQVMSDPGGGLTFVANPTKPGVSRHLNRTP 89
ADR+QK + KM + E+Y S T P +T+V+N PG + N P
Sbjct 243 ADRKQKTDREKMEKRTPQEKEKYQPSYETTILTECSPWPEITYVSNSPSPGFNSSHNSFP 302
> xla:100379090 tshz1a, Xtsh1a, tsh1, tshz1-a; teashirt zinc finger
homeobox 1 a
Length=1078
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 43 NSLIKVSEQYNVSVVLTNQVMSDPGG 68
+SL ++ EQ NV+ V+TN+ +S GG
Sbjct 1003 HSLNRIQEQQNVTKVITNKALSSVGG 1028
> dre:751690 ccdc126, MGC153694, ccdc26, si:ch211-155k24.3, zgc:153694;
coiled-coil domain containing 126
Length=166
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query 38 LNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGG----LTFVANPTKPGVSRH 84
L+ +LN L+K+ + +V + +S P GG L V+ PTK + H
Sbjct 89 LDDILNRLVKLEGKVEAAVNASTHNISHPAGGTGILLAAVSRPTKQNLPAH 139
> dre:404608 MGC77165; zgc:77165; K10871 RAD51-like protein 3
Length=327
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query 12 IIVDSIMALFRVDFSGRGELADRQQKLNKMLNSLIKVSEQYNVSVVLTNQVMSDPGGGLT 71
++VDS+ A+ G+ + L ++ L +++ +N++V++TN V D G
Sbjct 203 LMVDSVSAVLSPILGGKQN--EGMSLLMQVAGELKMIAKDFNIAVLVTNHVTKDGNG--- 257
Query 72 FVANPTKPGVSRHLNRTPRSR 92
K G+ + PR+R
Sbjct 258 ----QVKAGLGLSWSHVPRTR 274
Lambda K H
0.320 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2050913756
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40