bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_4658_orf4
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_092130 60s ribosomal protein L13a, putative ; K0287... 67.4 1e-11
sce:YIL133C RPL16A, RPL13; Rpl16ap; K02872 large subunit ribos... 62.4 4e-10
sce:YNL069C RPL16B, RP23; Rpl16bp; K02872 large subunit riboso... 61.6 6e-10
ath:AT5G48760 60S ribosomal protein L13A (RPL13aD); K02872 lar... 53.9 1e-07
hsa:23521 RPL13A, TSTA1; ribosomal protein L13a; K02872 large ... 53.1 2e-07
ath:AT3G07110 60S ribosomal protein L13A (RPL13aA) 53.1 2e-07
xla:379822 rpl13a, MGC54018; ribosomal protein L13a; K02872 la... 51.6 6e-07
dre:560828 rpl13a, MGC56275, hm:zehp0384, wu:fa95e06, wu:fb08g... 51.2 8e-07
mmu:638236 60S ribosomal protein L13a-like 50.8 9e-07
mmu:22121 Rpl13a, 1810026N22Rik, MGC107571, Tstap198-7, tum-an... 50.8 1e-06
ath:AT3G24830 60S ribosomal protein L13A (RPL13aB); K02872 lar... 50.8 1e-06
ath:AT4G13170 60S ribosomal protein L13A (RPL13aC); K02872 lar... 50.8 1e-06
bbo:BBOV_II002800 18.m06229; ribosomal protein L13; K02872 lar... 50.1 2e-06
tpv:TP04_0388 60S ribosomal protein L13; K02872 large subunit ... 49.3 3e-06
cpv:cgd5_970 60S ribosomal protein L13A ; K02872 large subunit... 48.5 6e-06
pfa:PF10_0043 60S ribosomal protein L13, putative; K02872 larg... 48.1 6e-06
cel:M01F1.2 rpl-16; Ribosomal Protein, Large subunit family me... 43.1 2e-04
> tgo:TGME49_092130 60s ribosomal protein L13a, putative ; K02872
large subunit ribosomal protein L13Ae
Length=286
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
LQV+EGVP ERKK++VVP ALR+VRL+P R+FCRLG+LS
Sbjct 185 LQVFEGVPTMVERKKRMVVPSALRIVRLKPKRNFCRLGDLSS 226
> sce:YIL133C RPL16A, RPL13; Rpl16ap; K02872 large subunit ribosomal
protein L13Ae
Length=199
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query 16 RQQQQQQMARDAAGV--LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSEL 73
R + AR A + L+V+EG+P Y++KK+VVVPQALRV+RL+PGR + LG+LS
Sbjct 85 RGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTS 144
Query 74 I 74
+
Sbjct 145 V 145
> sce:YNL069C RPL16B, RP23; Rpl16bp; K02872 large subunit ribosomal
protein L13Ae
Length=198
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query 16 RQQQQQQMARDAAGV--LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSEL 73
R + AR A + L+++EG+P Y++KK+VVVPQALRV+RL+PGR + LG+LS
Sbjct 84 RGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTS 143
Query 74 I 74
+
Sbjct 144 V 144
> ath:AT5G48760 60S ribosomal protein L13A (RPL13aD); K02872 large
subunit ribosomal protein L13Ae
Length=206
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query 21 QQMARDAAGV--LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
+ R AA + L+VYEGVP Y++ K++V+P AL+V+RL+ G +C LG LS
Sbjct 95 HKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSS 148
> hsa:23521 RPL13A, TSTA1; ribosomal protein L13a; K02872 large
subunit ribosomal protein L13Ae
Length=203
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
L+V++G+P Y++KK++VVP AL+VVRL+P R F LG L+
Sbjct 102 LKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAH 143
> ath:AT3G07110 60S ribosomal protein L13A (RPL13aA)
Length=207
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 0/47 (0%)
Query 26 DAAGVLQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
+A L+V+EGVP Y++ K++VVP AL+V+RL+ G +C LG LS
Sbjct 102 NALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSS 148
> xla:379822 rpl13a, MGC54018; ribosomal protein L13a; K02872
large subunit ribosomal protein L13Ae
Length=231
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 33/42 (78%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
L+V++G+P Y+++K++VVP AL++VRL+P R F LG L+
Sbjct 130 LKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFAFLGRLAH 171
> dre:560828 rpl13a, MGC56275, hm:zehp0384, wu:fa95e06, wu:fb08g07,
wu:fd05d08; ribosomal protein L13a; K02872 large subunit
ribosomal protein L13Ae
Length=205
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 33/42 (78%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
L+V++G+P Y+++K++VVP AL++VRL+P R F LG L+
Sbjct 104 LKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAH 145
> mmu:638236 60S ribosomal protein L13a-like
Length=174
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
L+V +G P Y++KK++VVP AL+VVRL+P R F LG L+
Sbjct 73 LKVLDGTPPPYDKKKRMVVPAALKVVRLKPTRTFAYLGRLAH 114
> mmu:22121 Rpl13a, 1810026N22Rik, MGC107571, Tstap198-7, tum-antigen;
ribosomal protein L13A; K02872 large subunit ribosomal
protein L13Ae
Length=203
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
L+V +G+P Y++KK++VVP AL+VVRL+P R F LG L+
Sbjct 102 LKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAH 143
> ath:AT3G24830 60S ribosomal protein L13A (RPL13aB); K02872 large
subunit ribosomal protein L13Ae
Length=206
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query 21 QQMARDAAGV--LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
+ R AA + L+V+EGVP Y++ K++V+P AL+V+RL+ G +C LG LS
Sbjct 95 HKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSS 148
> ath:AT4G13170 60S ribosomal protein L13A (RPL13aC); K02872 large
subunit ribosomal protein L13Ae
Length=206
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query 21 QQMARDAAGV--LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
+ R AA + L+V+EG+P Y++ K++V+P AL+V+RL+ G +C LG LS
Sbjct 95 HKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSS 148
> bbo:BBOV_II002800 18.m06229; ribosomal protein L13; K02872 large
subunit ribosomal protein L13Ae
Length=202
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGEL 70
L+ YEGVP Y++ KK VVP ALR ++L+P R CRLG++
Sbjct 101 LKTYEGVPPPYDKVKKQVVPSALRFLKLKPHRRHCRLGDV 140
> tpv:TP04_0388 60S ribosomal protein L13; K02872 large subunit
ribosomal protein L13Ae
Length=201
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 0/52 (0%)
Query 19 QQQQMARDAAGVLQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGEL 70
+ + A L+ +EGVP KY + KK VV ALR ++L+PGR + RLG++
Sbjct 89 HKTKRGNHALKTLKTFEGVPPKYAKVKKHVVTSALRFLKLKPGRRYARLGDV 140
> cpv:cgd5_970 60S ribosomal protein L13A ; K02872 large subunit
ribosomal protein L13Ae
Length=204
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query 21 QQMARDAAGV--LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSELI 74
+ R AA + L +G P +++ K+VVVP +LRV+RL+P R + LG LS L+
Sbjct 91 HKTPRGAAALARLTTIDGCPAPFDKVKRVVVPSSLRVLRLKPQRKYTTLGTLSSLV 146
> pfa:PF10_0043 60S ribosomal protein L13, putative; K02872 large
subunit ribosomal protein L13Ae
Length=202
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
Query 31 LQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
L+V G+P Y++KKK V+P ALR RL+ R +CRLG LS
Sbjct 101 LKVCVGMPYPYDKKKKYVLPSALRAFRLKKHRRYCRLGTLSS 142
> cel:M01F1.2 rpl-16; Ribosomal Protein, Large subunit family
member (rpl-16); K02872 large subunit ribosomal protein L13Ae
Length=202
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query 19 QQQQMARDAAGVLQVYEGVPVKYERKKKVVVPQALRVVRLRPGRDFCRLGELSE 72
+ +A L+ YEGVP KY++ K + P A R RL+P R FC +G LS
Sbjct 91 HKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSH 143
Lambda K H
0.322 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2036602604
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40