bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_3620_orf2
Length=100
Score E
Sequences producing significant alignments: (Bits) Value
cpv:cgd4_3260 DNA-directed RNA polymerases I, II, and III 8.3 ... 112 4e-25
tgo:TGME49_017560 DNA-directed RNA polymerase II, 8.2 kDa poly... 110 9e-25
bbo:BBOV_III004290 17.m07387; RNA polymerases N / 8 kDa subuni... 109 2e-24
tpv:TP02_0237 DNA-directed RNA polymerase subunit N; K03058 DN... 109 2e-24
ath:AT1G61700 DNA-directed RNA polymerase II, putative (RPB10)... 102 4e-22
pfa:PF07_0027 DNA-directed RNA polymerase 2 8.2
sce:YOR210W RPB10; ABC10-beta; K03007 DNA-directed RNA polymer... 97.4 9e-21
ath:AT1G11475 NRPB10; NRPB10; DNA binding / DNA-directed RNA p... 97.4 9e-21
dre:553705 MGC112305; zgc:112305 (EC:2.7.7.6); K03007 DNA-dire... 94.7 6e-20
xla:734578 polr2l; polymerase (RNA) II (DNA directed) polypept... 94.4 8e-20
mmu:66491 Polr2l, 2510029B14Rik; polymerase (RNA) II (DNA dire... 94.4 8e-20
hsa:5441 POLR2L, RBP10, RPABC5, RPB10, RPB10beta, RPB7.6, hRPB... 94.4 8e-20
cel:Y37E3.3 rpb-10; RNA Polymerase II (B) subunit family membe... 94.0 1e-19
mmu:100043714 Gm10774; predicted pseudogene 10774; K03007 DNA-... 93.6 1e-19
mmu:625405 Gm13015, OTTMUSG00000009925; predicted gene 13015; ... 84.7 6e-17
cel:K08H2.9 hypothetical protein 29.3 3.3
cpv:cgd3_1880 protein with 2x rrm domains 28.9 4.6
tgo:TGME49_094550 dynein heavy chain, putative ; K10413 dynein... 28.9 4.7
> cpv:cgd4_3260 DNA-directed RNA polymerases I, II, and III 8.3
kda polypeptide ; K03007 DNA-directed RNA polymerases I, II,
and III subunit RPABC5
Length=72
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 62/68 (91%), Gaps = 0/68 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+VIG+LW+ ++ LQN+V EG ALD LGL+RYCCRRMILTHADLI+KL+
Sbjct 1 MIIPVRCFTCGKVIGNLWQPWLVLLQNNVPEGEALDKLGLRRYCCRRMILTHADLIEKLM 60
Query 89 AYNIYEKK 96
AYNI+E+K
Sbjct 61 AYNIHERK 68
> tgo:TGME49_017560 DNA-directed RNA polymerase II, 8.2 kDa polypeptide,
putative (EC:2.7.7.6); K03007 DNA-directed RNA polymerases
I, II, and III subunit RPABC5
Length=72
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%), Gaps = 0/72 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIP+RCFTCG+VI HLWE++++ + D EG ALD LGL RYCCRRM+LTHADLIDKLL
Sbjct 1 MIIPIRCFTCGKVIAHLWEKWIDMIDEDRPEGEALDILGLDRYCCRRMLLTHADLIDKLL 60
Query 89 AYNIYEKKLPDQ 100
AYNIYEK++ +
Sbjct 61 AYNIYEKRIVES 72
> bbo:BBOV_III004290 17.m07387; RNA polymerases N / 8 kDa subunit
family protein; K03007 DNA-directed RNA polymerases I, II,
and III subunit RPABC5
Length=73
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 60/68 (88%), Gaps = 0/68 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIP+RCFTCG+VIGHLWEQ++E L+ +V+EG ALD L L RYCCRRMILTH DLI+KLL
Sbjct 1 MIIPIRCFTCGKVIGHLWEQWLELLKQNVNEGDALDRLDLTRYCCRRMILTHVDLIEKLL 60
Query 89 AYNIYEKK 96
YNIY+K+
Sbjct 61 VYNIYDKR 68
> tpv:TP02_0237 DNA-directed RNA polymerase subunit N; K03058
DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
Length=87
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 56/63 (88%), Gaps = 0/63 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+VIGHLWE+++E L+ D+ EG ALDDLGL RYCCRRMILTH DLI+KLL
Sbjct 1 MIIPVRCFTCGKVIGHLWEKWLEMLKKDIPEGQALDDLGLTRYCCRRMILTHVDLIEKLL 60
Query 89 AYN 91
YN
Sbjct 61 VYN 63
> ath:AT1G61700 DNA-directed RNA polymerase II, putative (RPB10);
K03007 DNA-directed RNA polymerases I, II, and III subunit
RPABC5
Length=71
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 56/71 (78%), Gaps = 0/71 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MI+PVRCFTCG+VIG+ W+ Y+E LQ D EG ALD LGL RYCCRRM++TH DLI+KLL
Sbjct 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query 89 AYNIYEKKLPD 99
YN EK P+
Sbjct 61 NYNTMEKSDPN 71
> pfa:PF07_0027 DNA-directed RNA polymerase 2 8.2
putative (EC:2.7.7.6); K03007 DNA-directed RNA polymerases
I, II, and III subunit RPABC5
Length=69
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 58/69 (84%), Gaps = 0/69 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG++IG+LW Y +KL+ + + AL++L L RYCCRRMILTHAD++DKLL
Sbjct 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query 89 AYNIYEKKL 97
YNIYE+KL
Sbjct 61 CYNIYERKL 69
> sce:YOR210W RPB10; ABC10-beta; K03007 DNA-directed RNA polymerases
I, II, and III subunit RPABC5
Length=70
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQND-VDEGVALDDLGLKRYCCRRMILTHADLIDKL 87
MI+PVRCF+CG+V+G WE Y+ LQ D +DEG AL LGLKRYCCRRMILTH DLI+K
Sbjct 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query 88 LAYNIYEKK 96
L YN EK+
Sbjct 61 LRYNPLEKR 69
> ath:AT1G11475 NRPB10; NRPB10; DNA binding / DNA-directed RNA
polymerase; K03007 DNA-directed RNA polymerases I, II, and
III subunit RPABC5
Length=71
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 54/68 (79%), Gaps = 0/68 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+VIG+ W+QY++ LQ D EG ALD L L RYCCRRM++TH DLI+KLL
Sbjct 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query 89 AYNIYEKK 96
YN EK
Sbjct 61 NYNTLEKS 68
> dre:553705 MGC112305; zgc:112305 (EC:2.7.7.6); K03007 DNA-directed
RNA polymerases I, II, and III subunit RPABC5
Length=67
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 53/67 (79%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+++G+ WE Y+ LQ + EG ALD LGLKRYCCRRM+L+H DLI+KLL
Sbjct 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query 89 AYNIYEK 95
Y EK
Sbjct 61 NYAPLEK 67
> xla:734578 polr2l; polymerase (RNA) II (DNA directed) polypeptide
L, 7.6kDa; K03007 DNA-directed RNA polymerases I, II,
and III subunit RPABC5
Length=67
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+++G+ WE Y+ LQ + EG ALD LGLKRYCCRRM+L H DLI+KLL
Sbjct 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query 89 AYNIYEK 95
Y EK
Sbjct 61 NYAPLEK 67
> mmu:66491 Polr2l, 2510029B14Rik; polymerase (RNA) II (DNA directed)
polypeptide L (EC:2.7.7.6); K03007 DNA-directed RNA
polymerases I, II, and III subunit RPABC5
Length=67
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+++G+ WE Y+ LQ + EG ALD LGLKRYCCRRM+L H DLI+KLL
Sbjct 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query 89 AYNIYEK 95
Y EK
Sbjct 61 NYAPLEK 67
> hsa:5441 POLR2L, RBP10, RPABC5, RPB10, RPB10beta, RPB7.6, hRPB7.6,
hsRPB10b; polymerase (RNA) II (DNA directed) polypeptide
L, 7.6kDa (EC:2.7.7.6); K03007 DNA-directed RNA polymerases
I, II, and III subunit RPABC5
Length=67
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+++G+ WE Y+ LQ + EG ALD LGLKRYCCRRM+L H DLI+KLL
Sbjct 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query 89 AYNIYEK 95
Y EK
Sbjct 61 NYAPLEK 67
> cel:Y37E3.3 rpb-10; RNA Polymerase II (B) subunit family member
(rpb-10); K03007 DNA-directed RNA polymerases I, II, and
III subunit RPABC5
Length=67
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 53/67 (79%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIP+RCFTCG+VIG WE Y+ LQ++ EG ALD LGL+RYCCRRM+L H DLI+KLL
Sbjct 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query 89 AYNIYEK 95
Y+ EK
Sbjct 61 NYHPLEK 67
> mmu:100043714 Gm10774; predicted pseudogene 10774; K03007 DNA-directed
RNA polymerases I, II, and III subunit RPABC5
Length=67
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCFTCG+++G+ WE Y+ LQ EG ALD LGLKRYCCRRM+L H DLI+KLL
Sbjct 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAKYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query 89 AYNIYEK 95
Y EK
Sbjct 61 NYAPLEK 67
> mmu:625405 Gm13015, OTTMUSG00000009925; predicted gene 13015;
K03007 DNA-directed RNA polymerases I, II, and III subunit
RPABC5
Length=67
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 48/67 (71%), Gaps = 0/67 (0%)
Query 29 MIIPVRCFTCGRVIGHLWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLL 88
MIIPVRCF CG+ +G+ E Y+ LQ + EG ALD LGLKRYCCRR +L H DLI+KLL
Sbjct 1 MIIPVRCFICGKTVGNKREAYLGLLQAEYTEGDALDALGLKRYCCRRTLLAHVDLIEKLL 60
Query 89 AYNIYEK 95
Y EK
Sbjct 61 NYAPLEK 67
> cel:K08H2.9 hypothetical protein
Length=403
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query 56 DVDEGVALDDLGLKRYCCRRMILTHADLIDKLLAYNIYEKKLPD 99
+V EG+ LDD G + ++ H+ K AYN Y K++ D
Sbjct 351 NVHEGIKLDDTGFS-----KSVIAHSKKYGKTRAYNRYVKEMDD 389
> cpv:cgd3_1880 protein with 2x rrm domains
Length=1142
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 0/56 (0%)
Query 45 LWEQYVEKLQNDVDEGVALDDLGLKRYCCRRMILTHADLIDKLLAYNIYEKKLPDQ 100
+W +Y L + +E ++L ++ R+M L + L D L Y I+E++LP +
Sbjct 62 IWSEYRRFLSHQNEENLSLRVSKVRDLFYRQMSLPLSGLPDLLDEYRIWEEELPAE 117
> tgo:TGME49_094550 dynein heavy chain, putative ; K10413 dynein
heavy chain 1, cytosolic
Length=4937
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query 41 VIGHLWEQYVE--KLQNDVD 58
V+GH WEQ+VE KL+ D+D
Sbjct 694 VLGHGWEQHVEGQKLRQDID 713
Lambda K H
0.333 0.151 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2041372988
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40