bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_3495_orf1
Length=105
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_100280 small nuclear ribonucleoprotein, putative 122 3e-28
bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 112 3e-25
pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclea... 107 1e-23
cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 99.8 2e-21
ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 99.0 3e-21
ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 99.0 3e-21
tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 98.2 6e-21
dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear ri... 90.1 1e-18
mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;... 89.7 2e-18
hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-... 89.7 2e-18
mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325, Pe... 89.4 3e-18
hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912, ... 89.4 3e-18
xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-a... 87.8 7e-18
xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb', s... 87.0 1e-17
cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family memb... 80.9 9e-16
hsa:100133224 hypothetical protein LOC100133224 70.5 1e-12
sce:YER029C SMB1; Sm B; SmB; K11086 small nuclear ribonucleopr... 61.6 6e-10
mmu:78304 Lsmd1, 1500034E06Rik; LSM domain containing 1 47.0
dre:335819 lsmd1, fj33f12, si:ch211-30g3.3, wu:fj33f12; LSM do... 45.4 4e-05
xla:443945 lsmd1-a, MGC80306, lsmd1, pfaap2; LSM domain contai... 44.7 7e-05
mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acety... 43.1 2e-04
hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38... 43.1 2e-04
xla:414488 lsmd1-b, MGC81227, pfaap2; LSM domain containing 1 43.1
xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 3... 43.1 2e-04
cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8... 42.7 3e-04
ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 42.7 3e-04
ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRN... 42.7 3e-04
hsa:84316 LSMD1, MGC14151, MGC74837, PFAAP2; LSM domain contai... 42.7 3e-04
cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 42.4 3e-04
cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small n... 40.8 0.001
tgo:TGME49_072630 small nuclear ribonucleoprotein, putative ; ... 40.8 0.001
sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 40.8 0.001
cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); ... 40.8 0.001
tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putativ... 40.4 0.001
mmu:20643 Snrpe, AL022645, C76690, SME; small nuclear ribonucl... 40.0 0.002
hsa:6635 SNRPE, B-raf, SME, Sm-E; small nuclear ribonucleoprot... 40.0 0.002
cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA... 40.0 0.002
mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 40.0 0.002
hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 40.0 0.002
xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 39.7 0.002
dre:563948 zgc:171959; K12624 U6 snRNA-associated Sm-like prot... 39.3 0.003
ath:AT3G11500 small nuclear ribonucleoprotein G, putative / sn... 39.3 0.003
dre:566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated... 39.3 0.003
tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 39.3 0.003
pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associ... 38.9 0.004
tgo:TGME49_075750 small nuclear ribonucleoprotein E, putative ... 38.9 0.004
pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associa... 38.5 0.005
xla:443926 MGC80249 protein; K11097 small nuclear ribonucleopr... 38.5 0.005
xla:447076 lsm5; LSM5 homolog, U6 small nuclear RNA associated... 38.1 0.006
mmu:66373 Lsm5, 2010208O10Rik, 2310034K10Rik; LSM5 homolog, U6... 38.1 0.007
> tgo:TGME49_100280 small nuclear ribonucleoprotein, putative
Length=236
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Query 7 FIIFSIFKSKQFKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEF 66
F + + ++K KMPSKNARLQQW+NYR+R+ LQDSRMLVG+ LAFDRHMN+VLADAEEF
Sbjct 29 FSVGTEERNKFSKMPSKNARLQQWINYRIRVCLQDSRMLVGSLLAFDRHMNIVLADAEEF 88
Query 67 RKVKIKKSEAK-KTFVEEKELKRTVGFILLR 96
RK+KI+ A K EEKE+KR+VG +++R
Sbjct 89 RKLKIRHKLADGKHQTEEKEVKRSVGLMMIR 119
> bbo:BBOV_III006010 17.m07530; Sm domain containing protein;
K11086 small nuclear ribonucleoprotein B and B'
Length=159
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 5/86 (5%)
Query 20 MPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKT 79
M KN R+QQWL YRVR+ ++D R VGTF+AFD+HMNLVLAD EEFR K K + +K
Sbjct 1 MAGKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKV 60
Query 80 FVEEKELKRTVGFILLRGENICTFIA 105
ELKRT+GFI+LRGENI +F A
Sbjct 61 -----ELKRTLGFIMLRGENIVSFTA 81
> pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclear
ribonucleoprotein B and B'
Length=201
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 62/84 (73%), Gaps = 7/84 (8%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
KN+RL+ WL YRVR+ + D+R VGTFL++DRHMN+VL DAEEFRKVK +++
Sbjct 2 GKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSL----- 56
Query 82 EEKELKRTVGFILLRGENICTFIA 105
KE+KR VG IL+RGENI +F A
Sbjct 57 --KEIKRVVGLILIRGENIVSFTA 78
> cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein
B and B'
Length=139
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 62/79 (78%), Gaps = 8/79 (10%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKEL 86
+Q+++NYR+R+ +QD R++VG +AFDRHMNLVL+D +E+R+V KK E E KEL
Sbjct 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRV--KKGE------ESKEL 52
Query 87 KRTVGFILLRGENICTFIA 105
KR++G I+LRGENI TF+A
Sbjct 53 KRSLGLIMLRGENIVTFVA 71
> ath:AT5G44500 small nuclear ribonucleoprotein associated protein
B, putative / snRNP-B, putative / Sm protein B, putative;
K11086 small nuclear ribonucleoprotein B and B'
Length=254
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
SK++++ Q++NYR+R+ +QD R L+G F+AFDRHMNLVL D EEFRK+ K KKT
Sbjct 4 SKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGN-KKTN- 61
Query 82 EEKELKRTVGFILLRGENICTF 103
EE+E +RT+G +LLRGE + +
Sbjct 62 EEREERRTLGLVLLRGEEVISM 83
> ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated
protein B); K11086 small nuclear ribonucleoprotein B
and B'
Length=257
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
SK++++ Q++NYR+R+ +QD R LVG F+AFDRHMNLVL D EEFRK+ K K
Sbjct 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG---KKIN 60
Query 82 EEKELKRTVGFILLRGENICTF 103
EE+E +RT+G +LLRGE + +
Sbjct 61 EEREDRRTLGLVLLRGEEVISM 82
> tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small
nuclear ribonucleoprotein B and B'
Length=155
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 7/86 (8%)
Query 20 MPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKT 79
MP KN R+Q WL Y VR+ L+D+R VGT +A+D++MNLVL+D EEFR + + K + +
Sbjct 1 MPGKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFR-MTLGKDKNR-- 57
Query 80 FVEEKELKRTVGFILLRGENICTFIA 105
E+KRT+GF+LLRGENI +F A
Sbjct 58 ----TEVKRTLGFVLLRGENIVSFTA 79
> dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear
ribonucleoprotein polypeptides B and B1; K11086 small nuclear
ribonucleoprotein B and B'
Length=239
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q ++YR+R +LQD R+ +GTF AFD+HMNL+L D +EFRK+K K S+
Sbjct 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 PEREEKRVLGLVLLRGENLVSM 80
> mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;
small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein
B and B'
Length=231
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q ++YR+R +LQD R+ +GTF AFD+HMNL+L D +EFRK+K K S+
Sbjct 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 AEREEKRVLGLVLLRGENLVSM 80
> hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-B;
small nuclear ribonucleoprotein polypeptides B and B1;
K11086 small nuclear ribonucleoprotein B and B'
Length=231
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q ++YR+R +LQD R+ +GTF AFD+HMNL+L D +EFRK+K K S+
Sbjct 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 AEREEKRVLGLVLLRGENLVSM 80
> mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325,
Peg4, SMN; small nuclear ribonucleoprotein N; K11100 small nuclear
ribonucleoprotein N
Length=240
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q ++YR+R +LQD R+ +GTF AFD+HMNL+L D +EFRK+K K ++
Sbjct 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 PEREEKRVLGLVLLRGENLVSM 80
> hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912,
DKFZp762N022, FLJ33569, FLJ36996, FLJ39265, HCERN3, MGC29886,
PWCR, RT-LI, SM-D, SMN, SNRNP-N, SNURF-SNRPN; small nuclear
ribonucleoprotein polypeptide N; K11100 small nuclear ribonucleoprotein
N
Length=240
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q ++YR+R +LQD R+ +GTF AFD+HMNL+L D +EFRK+K K ++
Sbjct 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 PEREEKRVLGLVLLRGENLVSM 80
> xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-associated
protein (snRNP) mRNA, clone Sm51; K11086 small nuclear
ribonucleoprotein B and B'
Length=236
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q +++R+R +LQD R+ +GTF AFD+HMNL+L D +EFRK+K K S+
Sbjct 4 GKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 PEREEKRVLGLVLLRGENLVSM 80
> xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb',
snrnp-b, snrpb1; small nuclear ribonucleoprotein polypeptides
B and B1; K11086 small nuclear ribonucleoprotein B and B'
Length=234
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
K++++ Q +++R+R LQD R+ +GTF AFD+HMNL+L D +EFRK+K K S+
Sbjct 4 GKSSKMLQHIDFRMRCTLQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----- 58
Query 82 EEKELKRTVGFILLRGENICTF 103
E+E KR +G +LLRGEN+ +
Sbjct 59 PEREEKRVLGLVLLRGENLVSM 80
> cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family member
(snr-2); K11086 small nuclear ribonucleoprotein B and B'
Length=160
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 5/82 (6%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
SKN ++ LNYR++I+LQD R +G F AFD+HMN++LA+ EE R++K K KKT
Sbjct 4 SKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPK--AGKKTDG 61
Query 82 EEKELKRTVGFILLRGENICTF 103
EE KR +G +L+RGE+I +
Sbjct 62 EE---KRILGLVLVRGEHIVSM 80
> hsa:100133224 hypothetical protein LOC100133224
Length=202
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query 17 QFKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEA 76
Q ++ ++ ARLQQ ++YR++ +LQ+ + G F AFD+H+NL+L D +EFRK+K K
Sbjct 28 QSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKN--V 85
Query 77 KKTFVEEKELKRTVGFILLRGENICTF 103
K+ +EEK G +LL GEN+ +
Sbjct 86 KQPELEEKHF---WGLVLLHGENLVSM 109
> sce:YER029C SMB1; Sm B; SmB; K11086 small nuclear ribonucleoprotein
B and B'
Length=196
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query 25 ARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFR-------KVKIKKSEAK 77
+RL ++Y++R++ QD R+ +G +AFD+HMNLVL + E R K++ +K
Sbjct 10 SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSKD 69
Query 78 KTFVEEKELKRTVGFILLRGENICTFI 104
T + K KR +G +LRGE I + +
Sbjct 70 GTTLNIKVEKRVLGLTILRGEQILSTV 96
> mmu:78304 Lsmd1, 1500034E06Rik; LSM domain containing 1
Length=125
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query 16 KQFKMPSKNAR--LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKK 73
+Q P+ AR L+ LN +RI + D R LVG FL DR N++L A+EF K
Sbjct 32 EQEDSPATRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSF 91
Query 74 SEAKKTFVEEKELKRTVGFILLRGENI 100
S + R +G ++ G +I
Sbjct 92 SAGE---------PRVLGLAMVPGHHI 109
> dre:335819 lsmd1, fj33f12, si:ch211-30g3.3, wu:fj33f12; LSM
domain containing 1
Length=109
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query 25 ARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEK 84
+L+ LN +RI + D R LVG FL DR N++L A+EF K S+ +
Sbjct 26 CKLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDSLSQGE------- 78
Query 85 ELKRTVGFILLRGENI 100
R +G ++ G ++
Sbjct 79 --PRVLGLAMIPGHHV 92
> xla:443945 lsmd1-a, MGC80306, lsmd1, pfaap2; LSM domain containing
1
Length=113
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query 21 PSKNAR--LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEF 66
P AR L+ LN +RI + D R L+G FL DR N++L A+EF
Sbjct 25 PGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEF 72
> mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=96
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query 25 ARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEK 84
+ L+ ++N V ++ D RM+VGT FD+ +NL+L ++ E + F +
Sbjct 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------------RVFSSSQ 50
Query 85 ELKRTV-GFILLRGENICTF 103
+++ V G ++RG+N+
Sbjct 51 GVEQVVLGLYIVRGDNVAVI 70
> hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query 25 ARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEK 84
+ L+ ++N V ++ D RM+VGT FD+ +NL+L ++ E + F +
Sbjct 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------------RVFSSSQ 50
Query 85 ELKRTV-GFILLRGENICTF 103
+++ V G ++RG+N+
Sbjct 51 GVEQVVLGLYIVRGDNVAVI 70
> xla:414488 lsmd1-b, MGC81227, pfaap2; LSM domain containing
1
Length=111
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 0/41 (0%)
Query 26 RLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEF 66
+L+ LN +RI + D R L+G FL DR N++L A+EF
Sbjct 32 KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEF 72
> xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query 25 ARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEK 84
+ L+ ++N V ++ D RM+VGT FD+ +NL+L ++ E + F +
Sbjct 3 SALENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHE------------RVFSSSQ 50
Query 85 ELKRTV-GFILLRGENICTF 103
+++ V G ++RG+N+
Sbjct 51 GVEQVVLGLYIVRGDNVAVI 70
> cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8);
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=98
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query 25 ARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVE-E 83
+ L ++N V +V D R++VG FD+ +NLV+ DA E +++ E E
Sbjct 3 STLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE------------RSYSETE 50
Query 84 KELKRTVGFILLRGENIC 101
L +G ++RGEN+
Sbjct 51 GVLTTPLGLYIIRGENVA 68
> ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=98
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEE--KELKR 88
L+ R+ + L+ R L G AFD+H+N++L D EE I E EE + KR
Sbjct 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE----TITTVEIDDETYEEIVRTTKR 75
Query 89 TVGFILLRGENI 100
T+ F+ +RG+ +
Sbjct 76 TIEFLFVRGDGV 87
> ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=97
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query 10 FSIFKSKQFKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKV 69
S+ + + P RL + R+ + L+ R L G AFD+H+N++L D EE
Sbjct 1 MSVEEDATVREPLDLIRLS--IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEV--- 55
Query 70 KIKKSEAKKTFVEE--KELKRTVGFILLRGENI 100
I E EE + KRTV F+ +RG+ +
Sbjct 56 -ITTIEIDDETYEEIVRTTKRTVPFLFVRGDGV 87
> hsa:84316 LSMD1, MGC14151, MGC74837, PFAAP2; LSM domain containing
1
Length=173
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query 26 RLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKE 85
+L+ LN +RI + D R LVG FL DR N++L A+EF K S +
Sbjct 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGE-------- 143
Query 86 LKRTVGFILLRGENI 100
R +G ++ G +I
Sbjct 144 -PRVLGLAMVPGHHI 157
> cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3);
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEE--K 84
L+ L+ RV + +++ R L G AFD+H+N+VL++ EE I E + EE K
Sbjct 21 LRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE----TITTREVDEDTFEEIYK 76
Query 85 ELKRTVGFILLRGENI 100
+ KR V + +RG+++
Sbjct 77 QTKRVVPMLFVRGDSV 92
> cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small
nuclear ribonucleoprotein E
Length=92
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 26/92 (28%)
Query 9 IFSIFKSKQFKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRK 68
IF +F SKQ R+Q WL +VL+ G FD +MN+VL A E
Sbjct 20 IFHLFTSKQ--------RVQIWLYDHKNLVLE------GVIQGFDEYMNIVLDQASE--- 62
Query 69 VKIKKSEAKKTFVEEKELKRTVGFILLRGENI 100
V KK ++T +VG +LLRGENI
Sbjct 63 VYTKKEVRRET---------SVGQLLLRGENI 85
> tgo:TGME49_072630 small nuclear ribonucleoprotein, putative
; K12627 U6 snRNA-associated Sm-like protein LSm8
Length=96
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKEL 86
LQ ++ +V IV D R+ VGT FD+ NL+L EE +I +A VE+ L
Sbjct 5 LQTLVDQKVEIVTVDGRVFVGTLKGFDQSTNLILDKCEE----RIYSVDAA---VEQIAL 57
Query 87 KRTVGFILLRGENI 100
G L+RG+NI
Sbjct 58 ----GLYLIRGDNI 67
> sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part
of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or
8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear
Lsm8p complex part of U6 snRNP and possibly involved in processing
tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=89
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 0/35 (0%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEE 65
L+ RV I L+ +R LVGT AFD H N+VL+DA E
Sbjct 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
> cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1);
K12620 U6 snRNA-associated Sm-like protein LSm1
Length=125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query 29 QWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKELKR 88
+ L+ ++ +VL+D R L+G + D+ NL+L D ++TFVE+ +
Sbjct 16 EQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDV------------VERTFVEKYFCET 63
Query 89 TVGFILLRGENI 100
GF+L+RGEN+
Sbjct 64 GQGFMLIRGENV 75
> tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putative
; K12626 U6 snRNA-associated Sm-like protein LSm7
Length=99
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query 20 MPSKNAR----LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSE 75
M SK AR L ++LN RVR+ R + G D NLVL + EEF ++ E
Sbjct 1 MTSKEARSVIDLNKFLNQRVRVKFSGGREITGVLKGHDAVSNLVLDETEEF----LRDPE 56
Query 76 AKKTFVEEKELKRTVGFILLRGENIC 101
+++ RT+G I+ RG +
Sbjct 57 DPYKLLDQ---TRTLGLIVARGTAVV 79
> mmu:20643 Snrpe, AL022645, C76690, SME; small nuclear ribonucleoprotein
E; K11097 small nuclear ribonucleoprotein E
Length=92
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query 18 FKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAK 77
F+ +R+Q WL +V + ++ G + FD +MNLVL DAEE K++++
Sbjct 22 FRYLQNRSRIQVWLYEQVNMRIE------GCIIGFDEYMNLVLDDAEEIH----SKTKSR 71
Query 78 KTFVEEKELKRTVGFILLRGENI 100
K G I+L+G+NI
Sbjct 72 KQL----------GRIMLKGDNI 84
> hsa:6635 SNRPE, B-raf, SME, Sm-E; small nuclear ribonucleoprotein
polypeptide E; K11097 small nuclear ribonucleoprotein
E
Length=92
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query 18 FKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAK 77
F+ +R+Q WL +V + ++ G + FD +MNLVL DAEE K++++
Sbjct 22 FRYLQNRSRIQVWLYEQVNMRIE------GCIIGFDEYMNLVLDDAEEIH----SKTKSR 71
Query 78 KTFVEEKELKRTVGFILLRGENI 100
K G I+L+G+NI
Sbjct 72 KQL----------GRIMLKGDNI 84
> cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=95
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKELKRTV 90
L+ +V + + +R L GT A+D HMN+VL + EE + KS+ + + E+K KR +
Sbjct 15 LDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNS--EKKLKKRRI 72
Query 91 GFILLRGENI 100
+ LRG+ I
Sbjct 73 EMLFLRGDLI 82
> mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik,
SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEE-FRKVKIKKSEAKKTFVEEKELKRT 89
L+ R+ + +++ R L G A+D+H+N++L D EE ++I + ++ + K KR
Sbjct 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIY---KSTKRN 81
Query 90 VGFILLRGENIC 101
+ + +RG+ +
Sbjct 82 IPMLFVRGDGVV 93
> hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=102
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEE-FRKVKIKKSEAKKTFVEEKELKRT 89
L+ R+ + +++ R L G A+D+H+N++L D EE ++I + ++ + K KR
Sbjct 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIY---KSTKRN 81
Query 90 VGFILLRGENIC 101
+ + +RG+ +
Sbjct 82 IPMLFVRGDGVV 93
> xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated;
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEE-FRKVKIKKSEAKKTFVEEKELKRT 89
L+ R+ + +++ R L G A+D+H+N++L D EE ++I + ++ + K KR
Sbjct 25 LDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEIY---KSTKRN 81
Query 90 VGFILLRGENIC 101
+ + +RG+ +
Sbjct 82 IPMLFVRGDGVV 93
> dre:563948 zgc:171959; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=91
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKEL 86
+ + + R+ IV+++ + +VGT L FD +N+VL D EF +I + T +++
Sbjct 18 VDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEF---EITPEGRRITKLDQ--- 71
Query 87 KRTVGFILLRGENICTFIA 105
ILL G NI I
Sbjct 72 ------ILLNGNNITMLIP 84
> ath:AT3G11500 small nuclear ribonucleoprotein G, putative /
snRNP-G, putative / Sm protein G, putative; K11099 small nuclear
ribonucleoprotein G
Length=79
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 16/79 (20%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKEL 86
L+++++ +++I L +RM+VGT FD+ MNLV+ + E +
Sbjct 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV----------------NGDD 53
Query 87 KRTVGFILLRGENICTFIA 105
K +G +++RG +I T A
Sbjct 54 KTDIGMVVIRGNSIVTVEA 72
> dre:566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated;
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=97
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEE 65
L+ +++ V IV D RM+VGT FD+ +NL+L ++ E
Sbjct 5 LESYIHRTVAIVTSDGRMIVGTLKGFDQAINLILDESHE 43
> tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6
snRNA-associated Sm-like protein LSm3
Length=96
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query 31 LNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKELKRTV 90
L+ RV I + R +VG A+D H+N+VL D EE S+ + K+ R +
Sbjct 18 LDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEV--ATTVTSDPLTGDEQTKKTTRRL 75
Query 91 GFILLRGENI 100
I LRG+ I
Sbjct 76 PLIFLRGDAI 85
> pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=91
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query 25 ARLQQWLNYRVRIVLQD--------SRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEA 76
A +Q L+Y +R+ +++ R L+G A+D H+N++L++ E K +K+++
Sbjct 5 ALIQNPLDY-IRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDE 63
Query 77 KKTFVEEKELKRTVGFILLRGENI 100
+ K+++R + + +RG++I
Sbjct 64 ETV----KKMERNLDMVFVRGDSI 83
> tgo:TGME49_075750 small nuclear ribonucleoprotein E, putative
; K11097 small nuclear ribonucleoprotein E
Length=91
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 20/84 (23%)
Query 22 SKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFV 81
++ R+Q WL Y Q + G + FD +MN+VL DAEE V +KK
Sbjct 27 TQRMRVQIWL-YE-----QPDMRIEGRIMGFDEYMNMVLDDAEE---VYLKKRT------ 71
Query 82 EEKELKRTVGFILLRGENICTFIA 105
+ VG ILL+GEN+ +A
Sbjct 72 -----RIPVGRILLKGENVTLIMA 90
> pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=108
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query 21 PSKNAR----LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEA 76
P+K+ + +++++N ++R+ R +VGT + D NLVL EE+ + +
Sbjct 11 PNKDNKFMTDIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIR------DP 64
Query 77 KKTFVEEKELKRTVGFILLRGENIC 101
+FV + R++G I+ RG ++
Sbjct 65 NDSFVVTDKT-RSIGLIVARGTSVA 88
> xla:443926 MGC80249 protein; K11097 small nuclear ribonucleoprotein
E
Length=93
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 20/83 (24%)
Query 18 FKMPSKNARLQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAK 77
F+ +R+Q WL +V + ++ G + FD +MNLVL D+EE K++++
Sbjct 23 FRYLQNRSRIQVWLYEQVNMRIE------GCIIGFDEYMNLVLDDSEEIH----LKTKSR 72
Query 78 KTFVEEKELKRTVGFILLRGENI 100
K +G I+L+G+NI
Sbjct 73 K----------PIGRIMLKGDNI 85
> xla:447076 lsm5; LSM5 homolog, U6 small nuclear RNA associated;
K12624 U6 snRNA-associated Sm-like protein LSm5
Length=91
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKEL 86
+ + + R+ IV++ + +VGT L FD +N+VL D EF +I + T +++
Sbjct 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF---EITPEGRRITKLDQ--- 71
Query 87 KRTVGFILLRGENICTFIA 105
ILL G NI +
Sbjct 72 ------ILLNGNNITMLVP 84
> mmu:66373 Lsm5, 2010208O10Rik, 2310034K10Rik; LSM5 homolog,
U6 small nuclear RNA associated (S. cerevisiae); K12624 U6 snRNA-associated
Sm-like protein LSm5
Length=91
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query 27 LQQWLNYRVRIVLQDSRMLVGTFLAFDRHMNLVLADAEEFRKVKIKKSEAKKTFVEEKEL 86
+ + + R+ IV++ + +VGT L FD +N+VL D EF +I + T +++
Sbjct 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF---EITPEGRRITKLDQ--- 71
Query 87 KRTVGFILLRGENICTFIA 105
ILL G NI +
Sbjct 72 ------ILLNGNNITMLVP 84
Lambda K H
0.331 0.141 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2017521068
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40