bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2996_orf2
Length=196
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 345 6e-95
bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 281 1e-75
cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 244 1e-64
tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 240 2e-63
pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 238 1e-62
mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 218 2e-56
cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 213 3e-55
xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 212 8e-55
hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 210 3e-54
dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 205 7e-53
sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 201 1e-51
ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 195 7e-50
tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 166 4e-41
bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 164 2e-40
pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 160 4e-39
cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 159 5e-39
hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 159 5e-39
mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 159 5e-39
pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 157 2e-38
dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 157 2e-38
sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 155 1e-37
cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 155 1e-37
ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 154 2e-37
tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 152 8e-37
hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 149 8e-36
mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 149 9e-36
tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 148 1e-35
ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 148 1e-35
dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 147 3e-35
cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 146 6e-35
bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 146 6e-35
cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 145 8e-35
tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 143 3e-34
sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 143 4e-34
ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 125 1e-28
ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 121 2e-27
eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,... 90.1 4e-18
ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-dire... 86.7 5e-17
tgo:TGME49_100670 hypothetical protein 63.9 3e-10
bbo:BBOV_V000130 RNA polymerase beta subunit; K03043 DNA-direc... 49.3 1e-05
tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7... 47.4 3e-05
bbo:BBOV_II005840 18.m06484; hypothetical protein 37.4 0.031
mmu:17952 Naip6, Birc1f, Naip-rs4, Naip-rs4A; NLR family, apop... 31.2 2.6
> tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2,
putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1388
Score = 345 bits (885), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 162/197 (82%), Positives = 179/197 (90%), Gaps = 1/197 (0%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R VRKP+IGDKFASRHGQKGILSMLWPHEDMPF+ESG+VPDILFNPHGFPSRMTIGMLIE
Sbjct 1062 RCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFNPHGFPSRMTIGMLIE 1121
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGA-RWIDQEGHHGYVLRGGRYRTPEEEVKAQE 119
SMAGKAAAVHGA+QDAT FREF Q G +W+DQ G+HG+V RG RYRTPEEE +AQ+
Sbjct 1122 SMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQD 1181
Query 120 QGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179
+ +TPVDYFGKAL+ +GYQYYG EELYSGVYG+PLT HIFTGLIYYQRLRHMVTDK QVR
Sbjct 1182 EPETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVR 1241
Query 180 ATGPIDSLTHQPVKGRK 196
ATGP+D+LTHQPVKGRK
Sbjct 1242 ATGPVDALTHQPVKGRK 1258
> bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta
subunit; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1283
Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 152/196 (77%), Gaps = 2/196 (1%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R VR PI+GDKFASRHGQKGILSM WP E+MPF ESGI+PDI+FNPHG PSRMTIG LIE
Sbjct 982 RIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHGLPSRMTIGKLIE 1041
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
MAGK+AA+HGAFQDAT FR++ KQ TG +WID G G+ RG RY + EEE+ E
Sbjct 1042 CMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRYMSKEEELSKTE- 1100
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
D +DYFGK LL +GY YYG E +Y G G + HIF G I+YQRLRHMV+DKAQVRA
Sbjct 1101 -DDVIDYFGKTLLQAGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRA 1159
Query 181 TGPIDSLTHQPVKGRK 196
TGP+D++T QPVKGRK
Sbjct 1160 TGPVDAITKQPVKGRK 1175
> cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed
RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1281
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/197 (63%), Positives = 143/197 (72%), Gaps = 21/197 (10%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R VR P++GDKFASRHGQKGILSMLWP E+MPFSESG+VPDILFNPHGFPSRMTIGML+E
Sbjct 988 RIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRMTIGMLLE 1047
Query 61 SMAGKAAAVHGAFQ-DATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQE 119
SM GKAA +HGA DAT F + + R E+ KA E
Sbjct 1048 SMGGKAACIHGARSLDATPFNINISDDLS------------------RSEENCEDDKAGE 1089
Query 120 QGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179
+ T VDYFGKAL +G+QYYG E LY+G+ G+ L CHIF G+IYYQRLRHMV DKAQVR
Sbjct 1090 K--TTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVR 1147
Query 180 ATGPIDSLTHQPVKGRK 196
ATGPID+LT QPVKGRK
Sbjct 1148 ATGPIDALTRQPVKGRK 1164
> tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1235
Score = 240 bits (612), Expect = 2e-63, Method: Composition-based stats.
Identities = 111/196 (56%), Positives = 136/196 (69%), Gaps = 25/196 (12%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R +R PI+GDKFASRHGQKGILS +WP EDMPF E+GIVPD++FNPHG PSRMTIG LIE
Sbjct 957 RVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGKLIE 1016
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
MAGK A+++G QD+T F+ + + PE + E+
Sbjct 1017 GMAGKVASIYGKPQDSTCFQAYYSE------------------------NPENGDEEMEE 1052
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
D VDYFGK+L+ SGY+YYG E +Y G G + HIF GLIYYQRLRHMV+DKAQVR+
Sbjct 1053 VDV-VDYFGKSLIKSGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRS 1111
Query 181 TGPIDSLTHQPVKGRK 196
TGP+D++T QPVKGRK
Sbjct 1112 TGPVDTITKQPVKGRK 1127
> pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative;
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1517
Score = 238 bits (607), Expect = 1e-62, Method: Composition-based stats.
Identities = 119/247 (48%), Positives = 149/247 (60%), Gaps = 51/247 (20%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RS R+P +GDKFASRHGQKG++S L+P EDMPF+ESGIVPDI+FNPHG PSRMTIGMLIE
Sbjct 1153 RSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGMLIE 1212
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTP--------- 111
S+ GKAA+++G DAT FR++ +Q+ WID G G++ + ++
Sbjct 1213 SICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCGIKGFLEKNDTIKSDLDTCQKEKD 1272
Query 112 -----------------------------------------EEEVK-AQEQGDTPVDYFG 129
+EE K A D +DYF
Sbjct 1273 KNKNINNNNNNKIKENKYNNSNDSNASIDSDDNTNNCNDKRDEEEKKANITYDEKIDYFA 1332
Query 130 KALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRATGPIDSLTH 189
K LL GY YYG E LYSG+YG+PL HIF G+IYYQRLRHM DKAQVR TGP+ +LTH
Sbjct 1333 KLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPVCNLTH 1392
Query 190 QPVKGRK 196
QP+KG++
Sbjct 1393 QPLKGKR 1399
> mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1135
Score = 218 bits (554), Expect = 2e-56, Method: Composition-based stats.
Identities = 107/195 (54%), Positives = 129/195 (66%), Gaps = 37/195 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P IGDKFASRHGQKGILS LWP EDMPF+ESG++PDILFNPHGFPSRMTIGMLIE
Sbjct 872 RIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIE 931
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
SMAGK+AA+HG DAT F + ++E
Sbjct 932 SMAGKSAALHGLCHDATPF-----------------------------------IFSEE- 955
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
++ ++YFG+ L A+GY +YG E LYSG+ GM L IF G++YYQRLRHMV+DK QVR
Sbjct 956 -NSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRT 1014
Query 181 TGPIDSLTHQPVKGR 195
TG D +T+QP+ GR
Sbjct 1015 TGARDKVTNQPLGGR 1029
> cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1127
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 125/196 (63%), Gaps = 37/196 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R PIIGDKFASRHGQKGI S LWP E +PFSE+G+VPDI+FNPHGFPSRMTIGM+IE
Sbjct 846 RIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIE 905
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
SMAGKAAA HG DA+ F +
Sbjct 906 SMAGKAAATHGENYDASPF-------------------------------------VFNE 928
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
+T +++FG+ L +GY YYG E YSGV G + IF G++YYQRLRHM+ DK QVRA
Sbjct 929 DNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRA 988
Query 181 TGPIDSLTHQPVKGRK 196
TGPID +THQPVKGRK
Sbjct 989 TGPIDPITHQPVKGRK 1004
> xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide
B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1134
Score = 212 bits (539), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 112/196 (57%), Positives = 126/196 (64%), Gaps = 37/196 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P IGDKFASRHGQKGILS LWP EDMPF+ESG+VPDILFNPHGFPSRMTIGMLIE
Sbjct 871 RIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIE 930
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
SMAGK+AA+HG DAT F T EE A E
Sbjct 931 SMAGKSAALHGLCHDATPF------------------------------TFSEENSALE- 959
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
YFG+ L A GY +YG E+LYSG+ G+ L IF G++YYQRLRHMV+DK QVR
Sbjct 960 ------YFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRT 1013
Query 181 TGPIDSLTHQPVKGRK 196
TG D +T+QPV GR
Sbjct 1014 TGARDKVTNQPVGGRN 1029
> hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1079
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 129/196 (65%), Gaps = 37/196 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P IGDKFASRHGQKGILS LWP EDMPF+ESG+VPDILFNPHGFPSRMTIGMLIE
Sbjct 816 RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIE 875
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
SMAGK+AA+HG DAT F + ++E
Sbjct 876 SMAGKSAALHGLCHDATPF-----------------------------------IFSEE- 899
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
++ ++YFG+ L A+GY +YG E LYSG+ G+ L IF G++YYQRLRHMV+DK QVR
Sbjct 900 -NSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRT 958
Query 181 TGPIDSLTHQPVKGRK 196
TG D +T+QP+ GR
Sbjct 959 TGARDRVTNQPIGGRN 974
> dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298,
wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1132
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 127/196 (64%), Gaps = 37/196 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P IGDKFASRHGQKGILS LWP EDMPF+ESG+ PDILFNPHGFPSRMTIGMLIE
Sbjct 869 RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIE 928
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
SMAGK+A++HG DAT F T EE
Sbjct 929 SMAGKSASLHGLCHDATPF------------------------------TFSEE------ 952
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
++ +++FG+ L A+GY YYG E LYSG+ G+ L IF G++YYQRLRHMV+DK QVR
Sbjct 953 -NSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRT 1011
Query 181 TGPIDSLTHQPVKGRK 196
TG D +T+QP+ GR
Sbjct 1012 TGARDKVTNQPMGGRN 1027
> sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1203
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 121/196 (61%), Gaps = 37/196 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P IGDKF+SRHGQKG+ S WP DMPFSE+GI PDI+ NPH FPSRMTIGM +E
Sbjct 906 RIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVE 965
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
S+AGKA A+HG QD+T WI E
Sbjct 966 SLAGKAGALHGIAQDSTP-------------WIFNE------------------------ 988
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
DTP DYFG+ L +GY Y+G E +YSG G L I+ G++YYQRLRHMV DK QVR+
Sbjct 989 DDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRS 1048
Query 181 TGPIDSLTHQPVKGRK 196
TGP++SLT QPVKGRK
Sbjct 1049 TGPVNSLTMQPVKGRK 1064
> ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1178
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 28/197 (14%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFS-ESGIVPDILFNPHGFPSRMTIGMLI 59
R R PIIGDKF+SRHGQKG+ S LWP DMPF+ +G+ PD++ NPH FPSRMTI ML+
Sbjct 888 RHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLL 947
Query 60 ESMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQE 119
ES+A K ++HG F DAT FR+ K KT EEE K+
Sbjct 948 ESIAAKGGSLHGKFVDATPFRDAVK--KTNG---------------------EEESKSS- 983
Query 120 QGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179
VD G L G+ +YG E LYSG G+ L C IF G +YYQRLRHMV+DK QVR
Sbjct 984 ---LLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1040
Query 180 ATGPIDSLTHQPVKGRK 196
+TG +D LTHQP+KGRK
Sbjct 1041 STGQVDQLTHQPIKGRK 1057
> tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1244
Score = 166 bits (420), Expect = 4e-41, Method: Composition-based stats.
Identities = 83/195 (42%), Positives = 106/195 (54%), Gaps = 26/195 (13%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P IGDKF+SRHGQKG++ ++ HEDMPF+ESGIVPD++ NPHGFPSRMT+G L+E
Sbjct 985 RQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLE 1044
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+A K++ G F D+T F
Sbjct 1045 LVASKSSVFSGNFVDSTPFSNSYSDNLCN--------------------------DLNNS 1078
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G + L+ +G+ GKE LYSG+ G P+ IF G IYYQRL+HMVTDK R
Sbjct 1079 GSNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARG 1138
Query 181 TGPIDSLTHQPVKGR 195
GP +T QP +GR
Sbjct 1139 RGPRQPITRQPTEGR 1153
> bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta
subunit; K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1171
Score = 164 bits (415), Expect = 2e-40, Method: Composition-based stats.
Identities = 83/195 (42%), Positives = 110/195 (56%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R VR P IGDK++SRHGQKG++ ++ E++PFSE G VPD++ NPHGFPSRMT+G ++E
Sbjct 923 RQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLE 982
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+A KAA ++G F+D T F E
Sbjct 983 LVAAKAAVLNGIFEDGTPF---------------------------------------EA 1003
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
P ++L+ G+ GKE LYSG+ G PL IFTG +YYQ+L+HMV+DK RA
Sbjct 1004 DSLPA--IERSLIKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARA 1061
Query 181 TGPIDSLTHQPVKGR 195
GP SLT QP +GR
Sbjct 1062 VGPRQSLTRQPTEGR 1076
> pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1450
Score = 160 bits (404), Expect = 4e-39, Method: Composition-based stats.
Identities = 84/195 (43%), Positives = 108/195 (55%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P +GDKF+SRHGQKG++ +L EDMPF+ESGI PD++ NPHGFPSRMT+G L+E
Sbjct 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+A KAA + G ++ +G + G TP EE+
Sbjct 1265 LVASKAAVMDGEYK------------------------YGSIFSG----TPFEEI----- 1291
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
+ L G+ KE LYSG+ G PL +IF G IYYQ+L+HMV DK RA
Sbjct 1292 --------AEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARA 1343
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 1344 RGPRQLLTRQPTEGR 1358
> cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1287
Score = 159 bits (403), Expect = 5e-39, Method: Composition-based stats.
Identities = 78/195 (40%), Positives = 106/195 (54%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P +GDKF+SRHGQKG++ ++ ED+PFSE+G PD++ NPHGFPSRMT+G L+E
Sbjct 1042 RQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLE 1101
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
++ KA+ + G ++ TAF
Sbjct 1102 LISSKASVLDGNYRYGTAF----------------------------------------- 1120
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G TP++ K L+ G+ Y GKE L SG G + +IF G IYYQ+L+HMV DK R
Sbjct 1121 GGTPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARG 1180
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 1181 RGPRQILTRQPTEGR 1195
> hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase
(RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1075
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 106/195 (54%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P IGDKF+SRHGQKG+ ++ P EDMPF +SGI PDI+ NPHGFPSRMT+G LIE
Sbjct 828 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 887
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+AGKA + G F TAF
Sbjct 888 LLAGKAGVLDGRFHYGTAF----------------------------------------- 906
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G + V + L+ GY Y GK+ + SG+ G PL +I+ G +YYQ+L+HMV DK RA
Sbjct 907 GGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 966
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 967 RGPRAVLTRQPTEGR 981
> mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2;
polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1133
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 106/195 (54%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P IGDKF+SRHGQKG+ ++ P EDMPF +SGI PDI+ NPHGFPSRMT+G LIE
Sbjct 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+AGKA + G F TAF
Sbjct 946 LLAGKAGVLDGRFHYGTAF----------------------------------------- 964
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G + V + L+ GY Y GK+ + SG+ G PL +I+ G +YYQ+L+HMV DK RA
Sbjct 965 GGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 1024
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 1025 RGPRAVLTRQPTEGR 1039
> pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit,
putative; K03010 DNA-directed RNA polymerase II subunit
RPB2 [EC:2.7.7.6]
Length=1340
Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats.
Identities = 86/195 (44%), Positives = 103/195 (52%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P IGDKFASRHGQKG + + + EDMPFS GI PDI+ NPH PSRMTIG L+E
Sbjct 1089 RSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVE 1148
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK AA+ G DAT F + QE I Q+ H+
Sbjct 1149 CLTGKVAAIEGGEGDATPFSKITVQE------ISQKLHN--------------------- 1181
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
GY+ YG E LY+G G L IF G YYQRL+HMV DK R+
Sbjct 1182 --------------LGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARS 1227
Query 181 TGPIDSLTHQPVKGR 195
GP+ +T QP +GR
Sbjct 1228 RGPLTMITRQPTEGR 1242
> dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase
(RNA) III (DNA directed) polypeptide B; K03021 DNA-directed
RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1140
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 106/195 (54%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P IGDKF+SRHGQKG+ ++ P EDMPF +SGI PDI+ NPHG+PSRMT+G LIE
Sbjct 883 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIE 942
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+AGKA + G F TAF
Sbjct 943 LLAGKAGVLDGRFHYGTAF----------------------------------------- 961
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G + V + L+ GY Y GK+ + SG+ G PL +I+ G +YYQ+L+HMV DK RA
Sbjct 962 GGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 1021
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 1022 RGPRAVLTRQPTEGR 1036
> sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1149
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 107/195 (54%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P +GDKF+SRHGQKG+ ++ EDMPF++ GIVPDI+ NPHGFPSRMT+G +IE
Sbjct 901 RQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIE 960
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
++GKA ++G + T F
Sbjct 961 LISGKAGVLNGTLEYGTCF----------------------------------------- 979
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G + ++ K L+ G+ Y GK+ LYSG+ G L +IF G IYYQ+L+HMV DK RA
Sbjct 980 GGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1039
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 1040 RGPRAVLTRQPTEGR 1054
> cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1154
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 108/195 (55%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P +GDKF+SRHGQKG+ ++ EDMPF++ G+VPD++ NPHG+PSRMT+G L+E
Sbjct 907 RQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLME 966
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
++GKA V+G + TAF
Sbjct 967 LLSGKAGVVNGTYHYGTAF----------------------------------------- 985
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G V + L A GY Y GK+ L SG+ G PL+ +I+ G IYYQ+L+HMV DK RA
Sbjct 986 GGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARA 1045
Query 181 TGPIDSLTHQPVKGR 195
GP +LT QP +GR
Sbjct 1046 RGPRAALTRQPTEGR 1060
> ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase;
K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1188
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P IGDKF+SRHGQKG + M + EDMP++ G+ PDI+ NPH PSRMTIG LIE
Sbjct 930 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIE 989
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK AA G DAT F
Sbjct 990 CIMGKVAAHMGKEGDATPF----------------------------------------- 1008
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
D VD KAL GYQ G E +Y+G G PLT IF G YYQRL+HMV DK R
Sbjct 1009 TDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRG 1068
Query 181 TGPIDSLTHQPVKGR 195
GP+ LT QP +GR
Sbjct 1069 RGPVQILTRQPAEGR 1083
> tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III
subunit RPC2 [EC:2.7.7.6]
Length=1332
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 106/195 (54%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R P +GDKF+SRHGQKG++ ++ P ED+PF+ESG PD++ NPHGFPSRMT+G ++E
Sbjct 1087 RQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMME 1146
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+AGK+A GA Q TAF
Sbjct 1147 LIAGKSALQVGACQYGTAF----------------------------------------- 1165
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
G V+ G+ L A G+ Y GKE L SG+ G L ++F G IYYQ+L+HMV DK R
Sbjct 1166 GGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARG 1225
Query 181 TGPIDSLTHQPVKGR 195
GP LT QP +GR
Sbjct 1226 RGPRQLLTRQPTEGR 1240
> hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA)
II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 99/195 (50%), Gaps = 40/195 (20%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P IGDKFASRHGQKG + + EDMPF+ GI PDI+ NPH PSRMTIG LIE
Sbjct 924 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 983
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK +A G DAT F + V Q+
Sbjct 984 CLQGKVSANKGEIGDATPF--------------------------------NDAVNVQKI 1011
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
+ DY GY G E LY+G G +T IF G YYQRL+HMV DK RA
Sbjct 1012 SNLLSDY--------GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query 181 TGPIDSLTHQPVKGR 195
GPI L QP++GR
Sbjct 1064 RGPIQILNRQPMEGR 1078
> mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase
(RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 99/195 (50%), Gaps = 40/195 (20%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P IGDKFASRHGQKG + + EDMPF+ GI PDI+ NPH PSRMTIG LIE
Sbjct 924 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 983
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK +A G DAT F + V Q+
Sbjct 984 CLQGKVSANKGEIGDATPF--------------------------------NDAVNVQKI 1011
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
+ DY GY G E LY+G G +T IF G YYQRL+HMV DK RA
Sbjct 1012 SNLLSDY--------GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query 181 TGPIDSLTHQPVKGR 195
GPI L QP++GR
Sbjct 1064 RGPIQILNRQPMEGR 1078
> tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1190
Score = 148 bits (373), Expect = 1e-35, Method: Composition-based stats.
Identities = 79/195 (40%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RS+R P IGDKFASRHGQKG + M + ED+PF+ GIVPDI+ NPH PSRMTIG LIE
Sbjct 939 RSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIE 998
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK ++ G DAT F +
Sbjct 999 CLLGKVGSLVGMEGDATPFSKM-------------------------------------- 1020
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
+D L Y YG E ++G G + IF G YYQRL+HMV DK RA
Sbjct 1021 ---TLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARA 1077
Query 181 TGPIDSLTHQPVKGR 195
GP+ LT QP +GR
Sbjct 1078 RGPVTMLTRQPTEGR 1092
> ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1161
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 104/195 (53%), Gaps = 36/195 (18%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R R+P +GDKF+SRHGQKG+ ++ ED PFSE GI PD++ NPHGFPSRMT+G +IE
Sbjct 905 RHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIE 964
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ KA G F +AF E + GH
Sbjct 965 LLGSKAGVSCGRFHYGSAFGE-------------RSGHAD-------------------- 991
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
V+ L+ G+ Y GK+ LYSG+ G P+ +IF G IYYQ+L+HMV DK R
Sbjct 992 ---KVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARG 1048
Query 181 TGPIDSLTHQPVKGR 195
+GP +T QP +G+
Sbjct 1049 SGPRVMMTRQPTEGK 1063
> dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed)
polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA
polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 99/195 (50%), Gaps = 40/195 (20%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P IGDKFASRHGQKG + + EDMPF+ GI PDI+ NPH PSRMT+G LIE
Sbjct 924 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIE 983
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK +A G DAT F + V Q+
Sbjct 984 CLQGKVSANKGEIGDATPF--------------------------------NDAVNVQKV 1011
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
+ +Y GY G E LY+G G LT IF G YYQRL+HMV DK RA
Sbjct 1012 SNLLSEY--------GYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRA 1063
Query 181 TGPIDSLTHQPVKGR 195
GP+ L QP++GR
Sbjct 1064 RGPVQILNRQPMEGR 1078
> cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member
(rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1193
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 98/195 (50%), Gaps = 40/195 (20%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P IGDKFASRHGQKG + +++ EDMPF+ G+ PDI+ NPH PSRMTIG LIE
Sbjct 930 RSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIE 989
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK +A G DAT F + +K
Sbjct 990 CLQGKLSANKGEIGDATPFNDTVNVQKISG------------------------------ 1019
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
L GY G E +Y+G G LT IF G YYQRL+HMV DK RA
Sbjct 1020 ----------LLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRA 1069
Query 181 TGPIDSLTHQPVKGR 195
GPI + QP++GR
Sbjct 1070 RGPIQMMNRQPMEGR 1084
> bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta
subunit family protein (EC:2.7.7.6); K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1207
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RS+R P IGDKFASRHGQKG + M + ED+PF+ GIVPDI+ NPH PSRMTIG L+E
Sbjct 956 RSIRVPQIGDKFASRHGQKGTIGMTYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVE 1015
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK A G DAT F +
Sbjct 1016 CLVGKVGACCGMEGDATPFSKL-------------------------------------- 1037
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
V + + L GY +G E L+ G G + IF G YYQRL+HMV DK RA
Sbjct 1038 ---TVQHVAERLFECGYGKHGNEALHCGFTGEMIVSKIFIGPTYYQRLKHMVEDKIHARA 1094
Query 181 TGPIDSLTHQPVKGR 195
GP+ LT QP +GR
Sbjct 1095 RGPVTMLTRQPTEGR 1109
> cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1177
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 101/195 (51%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R++R P +GDKFASRHGQKG + + + EDMPF++ GI+PDI+ NPH PSRMTIG LIE
Sbjct 926 RTIRIPHVGDKFASRHGQKGTIGITYRTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIE 985
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GKA A+ G DAT F + +E
Sbjct 986 CLLGKACAIQGLEGDATPFTKITVEE---------------------------------- 1011
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
L +SG+Q G E +Y+G G L IF G YYQRL+HMV DK RA
Sbjct 1012 -------ISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGPTYYQRLKHMVDDKIHARA 1064
Query 181 TGPIDSLTHQPVKGR 195
G + LT QP +GR
Sbjct 1065 RGAVTMLTRQPREGR 1079
> tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,
putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=1259
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 102/195 (52%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
RSVR P GDKFASRHGQKG + + + EDMPF+E GI PD++ NPH PSRMTIG L+E
Sbjct 1008 RSVRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVE 1067
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ GK AA+ G DAT F +GY + R
Sbjct 1068 CLLGKTAAIFGGEGDATPF-------------------NGYAVLDISNR----------- 1097
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
L + GY+ +G E LY G G L IF G YYQRL+HMV DK RA
Sbjct 1098 -----------LHSLGYERFGNERLYHGHTGRHLPSLIFFGPTYYQRLKHMVDDKIHARA 1146
Query 181 TGPIDSLTHQPVKGR 195
GP+ LT QP++G+
Sbjct 1147 RGPVTMLTRQPMEGK 1161
> sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1224
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R+ + P IGDKFASRHGQKG + + + EDMPF+ GIVPD++ NPH PSRMT+ LIE
Sbjct 969 RTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIE 1028
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ K AA+ G DA+ F
Sbjct 1029 CLLSKVAALSGNEGDASPF----------------------------------------- 1047
Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180
D V+ K L GYQ G E +Y+G G L IF G YYQRLRHMV DK RA
Sbjct 1048 TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA 1107
Query 181 TGPIDSLTHQPVKGR 195
GP+ LT QPV+GR
Sbjct 1108 RGPMQVLTRQPVEGR 1122
> ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA
polymerase
Length=1172
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 97/197 (49%), Gaps = 32/197 (16%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R VR P +GDKF+S HGQKG+L L ++ PF+ GIVPDI+ NPH FPSR T G L+E
Sbjct 903 RQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 962
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ K A I +EG + R+ TP
Sbjct 963 AALSKGIACP----------------------IQKEGSSAAYTKLTRHATP--------- 991
Query 121 GDTP-VDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179
TP V + L +G+ +G E +Y+G G + IF G +YQRL HM DK + R
Sbjct 992 FSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFR 1051
Query 180 ATGPIDSLTHQPVKGRK 196
TGP+ LT QPV RK
Sbjct 1052 NTGPVHPLTRQPVADRK 1068
> ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA
polymerase/ ribonucleoside binding
Length=1055
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 100/197 (50%), Gaps = 31/197 (15%)
Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60
R VR P +GDKF+S HGQKG+L L ++ PF+ GIVPDI+ NPH FPSR T G L+E
Sbjct 785 RQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 844
Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120
+ K A +K+E + A + + R+ TP
Sbjct 845 AALSKGIAC-----------PIQKKEGSSAAYT----------KLTRHATP--------- 874
Query 121 GDTP-VDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179
TP V + L +G+ +G E +Y+G G + IF G +YQRL HM +K + R
Sbjct 875 FSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFR 934
Query 180 ATGPIDSLTHQPVKGRK 196
TGP+ LT QPV RK
Sbjct 935 NTGPVHPLTRQPVADRK 951
> eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,
ron, sdgB, stl, stv, tabD, tabG; RNA polymerase, beta subunit
(EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit
beta [EC:2.7.7.6]
Length=1342
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 97/214 (45%), Gaps = 41/214 (19%)
Query 9 GDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAA- 67
GDK A RHG KG++S + P EDMP+ E+G DI+ NP G PSRM IG ++E+ G AA
Sbjct 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122
Query 68 -------AVHGAFQDATAFREF----------RKQEKTGARWIDQEGHH-GYVLRGGR-Y 108
A+ Q+ REF +Q+ + + D+E LR G
Sbjct 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182
Query 109 RTP------EEEVKA-QEQGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTG 161
TP E E+K + GD P G+ LY G G + G
Sbjct 1183 ATPVFDGAKEAEIKELLKLGDLPTS--------------GQIRLYDGRTGEQFERPVTVG 1228
Query 162 LIYYQRLRHMVTDKAQVRATGPIDSLTHQPVKGR 195
+Y +L H+V DK R+TG +T QP+ G+
Sbjct 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262
> ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-directed
RNA polymerase subunit beta [EC:2.7.7.6]
Length=1072
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query 4 RKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMA 63
R+ +GDK A RHG KGI+S + P +DMP+ + G D++FNP G PSRM +G + E
Sbjct 814 REIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSL 873
Query 64 GKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQGDT 123
G A ++ F E +QE + R E +A +Q
Sbjct 874 GLAGSLLDRHYRIAPFDERYEQEAS------------------RKLVFSELYEASKQTAN 915
Query 124 PVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRATGP 183
P + +Y GK ++ G G P + G Y +L H V DK R++G
Sbjct 916 PWVF--------EPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGH 967
Query 184 IDSLTHQPVKGR 195
+T QP++GR
Sbjct 968 YALVTQQPLRGR 979
> tgo:TGME49_100670 hypothetical protein
Length=235
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 0/60 (0%)
Query 8 IGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAA 67
+GDK R+G KGILS + + D+PF ++ PDI+ G PSRM +G L E++ GK +
Sbjct 136 VGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVGKIS 195
> bbo:BBOV_V000130 RNA polymerase beta subunit; K03043 DNA-directed
RNA polymerase subunit beta [EC:2.7.7.6]
Length=971
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 0/62 (0%)
Query 8 IGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAA 67
+GDK RHG KG +S + + P++ +P+I+ +P G SRM +G IE G
Sbjct 743 VGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASRMNVGQFIEGYIGNTC 802
Query 68 AV 69
+
Sbjct 803 DI 804
> tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Length=1005
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 0/57 (0%)
Query 8 IGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAG 64
IGDK RHG KG++S + + D+P++ G+ P + +P G +R+ +G +E G
Sbjct 766 IGDKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCG 822
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 0/33 (0%)
Query 164 YYQRLRHMVTDKAQVRATGPIDSLTHQPVKGRK 196
Y+ +L H K Q R G SLT QPVKG++
Sbjct 891 YFLKLMHTSKSKFQYRTVGKYSSLTQQPVKGKR 923
> bbo:BBOV_II005840 18.m06484; hypothetical protein
Length=1146
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query 29 EDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHGAFQDATAFREFRKQEKT 88
+ M FS +GI+P F GFP R+TIG ++A A + Q ++EF++ E +
Sbjct 39 DPMAFS-TGILPH--FQMIGFPHRLTIGGPSYTLA--VALLENNPQRLKHYKEFKRDETS 93
Query 89 GARWIDQEGHHGYVLR 104
+ID E + Y+ R
Sbjct 94 WPTYIDNEAAYTYLWR 109
> mmu:17952 Naip6, Birc1f, Naip-rs4, Naip-rs4A; NLR family, apoptosis
inhibitory protein 6; K12807 baculoviral IAP repeat-containing
protein 1
Length=1403
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query 102 VLRGGRYRTPEEEVKAQEQGDTPVDYFG---KALLASGYQYYGKEE 144
+LRGG+ R EEE + + D P G +AL A+G+ + GK +
Sbjct 148 MLRGGKARYHEEEARLESFEDWPFYAHGTSPRALSAAGFVFTGKRD 193
Lambda K H
0.321 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5737858124
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40