bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2870_orf1
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
bbo:BBOV_IV006850 23.m06246; splicing factor, arginine/serine-... 96.7 2e-20
tgo:TGME49_011420 hypothetical protein 93.2 2e-19
cel:C33H5.12 rsp-6; SR Protein (splicing factor) family member... 84.0 1e-16
ath:AT4G31580 SRZ-22; SRZ-22; protein binding 83.2 2e-16
ath:AT2G24590 splicing factor, putative 82.8 2e-16
xla:446584 srsf7, 9g8, MGC81677, aag3, sfrs7; serine/arginine-... 79.3 3e-15
xla:446453 MGC78845 protein 79.3 3e-15
dre:402972 MGC77155, fb39b02, wu:fb39b02; zgc:77155; K12896 sp... 79.3 3e-15
mmu:225027 Srsf7, 35kDa, 9430065L19Rik, 9G8, MGC38287, NX-96, ... 79.3 3e-15
hsa:6432 SRSF7, 9G8, AAG3, SFRS7; serine/arginine-rich splicin... 79.3 3e-15
dre:100145909 sfrs3b, MGC63887, sfrs3, wu:fb44e08; splicing fa... 79.0 3e-15
xla:380152 srsf3, MGC52931, sfrs3, srp20; serine/arginine-rich... 78.6 4e-15
dre:368925 sfrs3a, sfrs3, si:zc263a23.9, zgc:86626; splicing f... 78.2 6e-15
mmu:20383 Srsf3, AL024116, Sfrs3, X16; serine/arginine-rich sp... 78.2 6e-15
hsa:6428 SRSF3, SFRS3, SRp20; serine/arginine-rich splicing fa... 78.2 6e-15
tpv:TP03_0226 splicing factor 78.2 6e-15
ath:AT1G23860 RSZP21; RSZP21 (RS-CONTAINING ZINC FINGER PROTEI... 77.8 7e-15
mmu:100502754 splicing factor, arginine/serine-rich 3-like 77.4 9e-15
mmu:632248 Gm7083, EG632248; predicted gene 7083 75.9
dre:572211 srsf7, MGC114203, sfrs7, zgc:114203; serine/arginin... 74.3 9e-14
ath:AT1G02840 SR1; SR1; RNA binding / nucleic acid binding / n... 61.6 7e-10
dre:406288 srsf1a, sfrs1a, sfrs1l, wu:fb52g10, wu:fb97g12, zgc... 60.1 2e-09
ath:AT4G02430 pre-mRNA splicing factor, putative / SR1 protein... 60.1 2e-09
cel:Y111B2A.18 rsp-3; SR Protein (splicing factor) family memb... 59.7 2e-09
mmu:110809 Srsf1, 1110054N12Rik, 5730507C05Rik, 6330415C05Rik,... 58.9 4e-09
dre:393565 srsf1b, MGC65898, sfrs1, sfrs1b, wu:fb80g05, zgc:11... 58.9 4e-09
hsa:6426 SRSF1, ASF, FLJ53078, MGC5228, SF2, SF2p33, SFRS1, SR... 58.5 5e-09
ath:AT1G09140 SF2/ASF-like splicing modulator (SRP30); K12890 ... 58.2 6e-09
cel:Y57G11A.5 hypothetical protein 56.6 2e-08
dre:550495 wu:fb12a12, wu:fb16h02, wu:fb55a06, wu:fc67h01, wu:... 56.6 2e-08
ath:AT3G49430 SRp34a; SRp34a (Ser/Arg-rich protein 34a); RNA b... 55.5 4e-08
ath:AT2G46610 arginine/serine-rich splicing factor, putative 54.3 1e-07
pfa:PFE0865c splicing factor, putative 53.5 1e-07
mmu:20384 Srsf5, MGC96781, Sfrs5; serine/arginine-rich splicin... 53.1 2e-07
hsa:6430 SRSF5, HRS, SFRS5, SRP40; serine/arginine-rich splici... 53.1 2e-07
dre:436883 srsf5b, sfrs5b, wu:fe15e05, zgc:113907, zgc:92278; ... 52.8 3e-07
bbo:BBOV_II002700 18.m06220; splicing factor, arginine/serine-... 52.4 3e-07
cel:W02B12.2 rsp-2; SR Protein (splicing factor) family member... 51.6 7e-07
ath:AT2G43410 FPA; FPA; RNA binding 51.6 7e-07
dre:405835 MGC77449; zgc:77449; K12890 splicing factor, argini... 51.2 7e-07
ath:AT3G61860 RSP31; RSP31; RNA binding / nucleic acid binding... 51.2 8e-07
hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K131... 51.2 8e-07
xla:379484 cirbp-b, MGC64461, Xcirp, cirbp, cirp, cirp2, xcirp... 50.8 9e-07
mmu:12696 Cirbp, Cirp, R74941; cold inducible RNA binding prot... 50.8 1e-06
tpv:TP04_0313 splicing factor; K12890 splicing factor, arginin... 50.8 1e-06
tgo:TGME49_012190 RNA recognition motif domain containing protein 50.4 1e-06
mmu:622469 Gm12966, OTTMUSG00000009528; predicted gene 12966; ... 50.1 2e-06
hsa:10929 SRSF8, SFRS2B, SRP46; serine/arginine-rich splicing ... 49.7 2e-06
dre:406691 srsf2, hm:zeh0252, sfrs2, wu:fb51a05, wu:fk59b08, z... 49.7 2e-06
ath:AT3G53500 RSZ32; zinc knuckle (CCHC-type) family protein 49.3 3e-06
> bbo:BBOV_IV006850 23.m06246; splicing factor, arginine/serine-rich
3
Length=140
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 0/64 (0%)
Query 10 EMTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVE 69
E T GRKVY+GNL+PE+T ++E +F ++G + NIWVAR PPGFAFVTFED RDA DA+E
Sbjct 6 ESTEGRKVYIGNLNPEATVEDVESLFSKFGTIGNIWVARRPPGFAFVTFEDPRDATDAIE 65
Query 70 ATDG 73
DG
Sbjct 66 ELDG 69
> tgo:TGME49_011420 hypothetical protein
Length=171
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query 7 MDDEMTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARD 66
MDD+ GRKVY+G ++ ++T+ ELE IF +YG +S +WVARNPPGFAF+TF+D RDA+D
Sbjct 6 MDDQ--EGRKVYIGGIEADTTTEELESIFGKYGTISTVWVARNPPGFAFLTFDDYRDAKD 63
Query 67 AVEATDGILHREK 79
AV DG +R K
Sbjct 64 AVAELDGYRYRGK 76
> cel:C33H5.12 rsp-6; SR Protein (splicing factor) family member
(rsp-6); K12896 splicing factor, arginine/serine-rich 7
Length=179
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 45/58 (77%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVG L ++TS ELEEIF R+G++ +WVAR PPGFAFV ++D RDA DAV A DG
Sbjct 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
> ath:AT4G31580 SRZ-22; SRZ-22; protein binding
Length=200
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
+VYVGNLDP T ELE+ FR +G + ++WVAR PPG+AF+ FED RDARDA+ A DG
Sbjct 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
> ath:AT2G24590 splicing factor, putative
Length=196
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
+VYVGNLDP T ELE+ FR +G + ++WVAR PPG+AF+ FED+RDARDA+ DG
Sbjct 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
> xla:446584 srsf7, 9g8, MGC81677, aag3, sfrs7; serine/arginine-rich
splicing factor 7; K12896 splicing factor, arginine/serine-rich
7
Length=234
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGIL 75
KVYVGNL + ELE F YG L +W+ARNPPGFAFV FED RDA DAV DG
Sbjct 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDG-- 69
Query 76 HREKYCCCSSSLLLLSS 92
K C S + LS+
Sbjct 70 ---KVICGSRVRVELST 83
> xla:446453 MGC78845 protein
Length=224
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGIL 75
KVYVGNL + ELE F YG L +W+ARNPPGFAFV FED RDA DAV DG
Sbjct 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDG-- 69
Query 76 HREKYCCCSSSLLLLSS 92
K C S + LS+
Sbjct 70 ---KVICGSRVRVELST 83
> dre:402972 MGC77155, fb39b02, wu:fb39b02; zgc:77155; K12896
splicing factor, arginine/serine-rich 7
Length=258
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 0/60 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGIL 75
KVYVG+L + ELE F YG L ++WVARNPPGFAFV +EDARDA DAV+ DG +
Sbjct 15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKV 74
> mmu:225027 Srsf7, 35kDa, 9430065L19Rik, 9G8, MGC38287, NX-96,
Sfrs7; serine/arginine-rich splicing factor 7; K12896 splicing
factor, arginine/serine-rich 7
Length=235
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGIL 75
KVYVGNL + ELE F YG L +W+ARNPPGFAFV FED RDA DAV DG
Sbjct 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG-- 69
Query 76 HREKYCCCSSSLLLLSS 92
K C S + LS+
Sbjct 70 ---KVICGSRVRVELST 83
> hsa:6432 SRSF7, 9G8, AAG3, SFRS7; serine/arginine-rich splicing
factor 7; K12896 splicing factor, arginine/serine-rich 7
Length=238
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGIL 75
KVYVGNL + ELE F YG L +W+ARNPPGFAFV FED RDA DAV DG
Sbjct 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG-- 69
Query 76 HREKYCCCSSSLLLLSS 92
K C S + LS+
Sbjct 70 ---KVICGSRVRVELST 83
> dre:100145909 sfrs3b, MGC63887, sfrs3, wu:fb44e08; splicing
factor, arginine/serine-rich 3b; K12892 splicing factor, arginine/serine-rich
3
Length=163
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVGNL SELE F YG L ++WVARNPPGFAFV FED RDA DAV DG
Sbjct 10 KVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDG 67
> xla:380152 srsf3, MGC52931, sfrs3, srp20; serine/arginine-rich
splicing factor 3; K12892 splicing factor, arginine/serine-rich
3
Length=191
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query 4 MHRMDDEMTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARD 63
MHR D KVYVGNL +ELE F YG L ++WVARNPPGFAFV FED RD
Sbjct 1 MHR--DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDLRD 58
Query 64 ARDAVEATDG 73
A DAV DG
Sbjct 59 AADAVRELDG 68
> dre:368925 sfrs3a, sfrs3, si:zc263a23.9, zgc:86626; splicing
factor, arginine/serine-rich 3a
Length=174
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVGNL +ELE F YG L ++WVARNPPGFAFV FED RDA DAV DG
Sbjct 15 KVYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDG 72
> mmu:20383 Srsf3, AL024116, Sfrs3, X16; serine/arginine-rich
splicing factor 3; K12892 splicing factor, arginine/serine-rich
3
Length=164
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVGNL +ELE F YG L ++WVARNPPGFAFV FED RDA DAV DG
Sbjct 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 68
> hsa:6428 SRSF3, SFRS3, SRp20; serine/arginine-rich splicing
factor 3; K12892 splicing factor, arginine/serine-rich 3
Length=164
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVGNL +ELE F YG L ++WVARNPPGFAFV FED RDA DAV DG
Sbjct 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 68
> tpv:TP03_0226 splicing factor
Length=132
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 46/58 (79%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
K++VGNL TS +L+ +F +YGK++N+WVARNPPGF FVTF+D RDA+DA+ +G
Sbjct 12 KLFVGNLVDSVTSQDLDLLFSKYGKVTNVWVARNPPGFGFVTFDDPRDAKDALIELNG 69
> ath:AT1G23860 RSZP21; RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN
21); protein binding
Length=164
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%), Gaps = 0/57 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATD 72
+VYVGNLDP T ELE+ F+ +G L N+WVAR PPG+AF+ F+D RDA DA+ A D
Sbjct 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
> mmu:100502754 splicing factor, arginine/serine-rich 3-like
Length=163
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVGNL +ELE F YG L ++WVARNPPGFAFV FED RDA DAV DG
Sbjct 10 KVYVGNLGNNGNKTELEWAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 67
> mmu:632248 Gm7083, EG632248; predicted gene 7083
Length=157
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 38/58 (65%), Gaps = 0/58 (0%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
KVYVGN +ELE F YG L N+WVARNPPGFAFV FED RD DAV DG
Sbjct 11 KVYVGNRGNNGNKTELERAFGYYGPLRNVWVARNPPGFAFVEFEDPRDDADAVRELDG 68
> dre:572211 srsf7, MGC114203, sfrs7, zgc:114203; serine/arginine-rich
splicing factor 7; K12896 splicing factor, arginine/serine-rich
7
Length=178
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGIL 75
KVYVGNL + ELE F YG L ++W+ARNP GFAFV FED RDA D+V DG
Sbjct 12 KVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDG-- 69
Query 76 HREKYCCCSSSLLLLSS 92
K C S + LS+
Sbjct 70 ---KVICGSRVRVELST 83
> ath:AT1G02840 SR1; SR1; RNA binding / nucleic acid binding /
nucleotide binding; K12890 splicing factor, arginine/serine-rich
1/9
Length=303
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNI--WVARNPPGFAFVTFEDARDARDAVEATD 72
R VYVGNL + E+E++F +YG + I V PPG+AFV F+DARDA DA+ D
Sbjct 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query 73 G 73
G
Sbjct 67 G 67
> dre:406288 srsf1a, sfrs1a, sfrs1l, wu:fb52g10, wu:fb97g12, zgc:66146;
serine/arginine-rich splicing factor 1a; K12890 splicing
factor, arginine/serine-rich 1/9
Length=245
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVA--RNPPGFAFVTFEDARDARDAVEATDG 73
++YVGNL P+ + ++E++F +YG + +I + R P FAFV FED RDA DAV A DG
Sbjct 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75
> ath:AT4G02430 pre-mRNA splicing factor, putative / SR1 protein,
putative
Length=278
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNI--WVARNPPGFAFVTFEDARDARDAVEATD 72
R +YVGNL + E+E++F +YG + I + PPG+AFV FEDARDA DA+ D
Sbjct 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query 73 G 73
G
Sbjct 67 G 67
> cel:Y111B2A.18 rsp-3; SR Protein (splicing factor) family member
(rsp-3); K12890 splicing factor, arginine/serine-rich 1/9
Length=258
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNIWV-ARNPPGFAFVTFEDARDARDAVEATDG 73
+KVYVGNL + E+E+IF +YG++ + + + P FAFV FED RDA DAV A DG
Sbjct 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
> mmu:110809 Srsf1, 1110054N12Rik, 5730507C05Rik, 6330415C05Rik,
AI482334, AW491331, Asf, Sf2, Sfrs1; serine/arginine-rich
splicing factor 1; K12890 splicing factor, arginine/serine-rich
1/9
Length=201
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVA--RNPPGFAFVTFEDARDARDAVEATDG 73
++YVGNL P+ + ++E++F +YG + +I + R P FAFV FED RDA DAV DG
Sbjct 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
> dre:393565 srsf1b, MGC65898, sfrs1, sfrs1b, wu:fb80g05, zgc:111894,
zgc:65898, zgc:76897; serine/arginine-rich splicing
factor 1b; K12890 splicing factor, arginine/serine-rich 1/9
Length=245
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVA--RNPPGFAFVTFEDARDARDAVEATDG 73
++YVGNL P+ + ++E++F +YG + +I + R P FAFV FED RDA DAV DG
Sbjct 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
> hsa:6426 SRSF1, ASF, FLJ53078, MGC5228, SF2, SF2p33, SFRS1,
SRp30a; serine/arginine-rich splicing factor 1; K12890 splicing
factor, arginine/serine-rich 1/9
Length=201
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVA--RNPPGFAFVTFEDARDARDAVEATDG 73
++YVGNL P+ + ++E++F +YG + +I + R P FAFV FED RDA DAV DG
Sbjct 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
> ath:AT1G09140 SF2/ASF-like splicing modulator (SRP30); K12890
splicing factor, arginine/serine-rich 1/9
Length=268
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNI--WVARNPPGFAFVTFEDARDARDAVEATD 72
R +YVGNL + E+E++F +YG + +I + PPG+AFV FED RDA DA+ D
Sbjct 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query 73 G 73
G
Sbjct 67 G 67
> cel:Y57G11A.5 hypothetical protein
Length=121
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query 12 THGRKVYVGNLDPESTSSEL-----------EEIFRRYGKLSNIWVARNPPGFAFVTFED 60
R+VYVGN+ ++T EL E +F G + +IW+A+ PPGFAFVTF+
Sbjct 14 VENRQVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKR 73
Query 61 ARDARDAVEATDG 73
A DAV+ +G
Sbjct 74 TVHAFDAVKYLNG 86
> dre:550495 wu:fb12a12, wu:fb16h02, wu:fb55a06, wu:fc67h01, wu:fj10g10,
zgc:109887; zgc:112425; K13195 cold-inducible RNA-binding
protein
Length=185
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query 11 MTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARN-----PPGFAFVTFEDARDAR 65
M+ K+++G L ++T LE+ F +YG ++N+ VARN GF FVTFE+ DA+
Sbjct 1 MSDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60
Query 66 DAVEATDG 73
DA+E +G
Sbjct 61 DALEGMNG 68
> ath:AT3G49430 SRp34a; SRp34a (Ser/Arg-rich protein 34a); RNA
binding / nucleic acid binding / nucleotide binding
Length=297
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNI--WVARNPPGFAFVTFEDARDARDAVEATD 72
R +YVGNL + E+E+IF +YG++ +I V PP + FV FE +RDA DA++ D
Sbjct 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRD 66
Query 73 G 73
G
Sbjct 67 G 67
> ath:AT2G46610 arginine/serine-rich splicing factor, putative
Length=250
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGI 74
R VYVGN D ++ S+LE +F ++G++ + + G+AFV FED RDA DA+ TD
Sbjct 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMK---SGYAFVYFEDERDAEDAIRRTDNT 58
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query 17 VYVGNLDP-ESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEAT 71
++V N DP + ++E F YGK+ N+ + RN FAFV F DA A+++T
Sbjct 97 LFVINFDPIRTRERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDST 149
> pfa:PFE0865c splicing factor, putative
Length=298
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPG--FAFVTFEDARDARDAVEATDG 73
++YVGNL +S ++E FR+YG + V + G FAF+ FEDARDA DA++ DG
Sbjct 9 RIYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDG 68
> mmu:20384 Srsf5, MGC96781, Sfrs5; serine/arginine-rich splicing
factor 5; K12893 splicing factor, arginine/serine-rich 4/5/6
Length=269
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
+V++G L+P + ++E F+ YG++ +I + R GF FV FED RDA DAV DG
Sbjct 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDG 59
> hsa:6430 SRSF5, HRS, SFRS5, SRP40; serine/arginine-rich splicing
factor 5; K12893 splicing factor, arginine/serine-rich
4/5/6
Length=272
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
+V++G L+P + ++E F+ YG++ +I + R GF FV FED RDA DAV DG
Sbjct 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDG 59
> dre:436883 srsf5b, sfrs5b, wu:fe15e05, zgc:113907, zgc:92278;
serine/arginine-rich splicing factor 5b; K12893 splicing factor,
arginine/serine-rich 4/5/6
Length=285
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
++++G L+P + ++E F+ YG++ +I + R GF FV F+D RDA DAV DG
Sbjct 5 RIFIGRLNPSAREKDVERFFKGYGRIRDIDLKR---GFGFVEFDDPRDAEDAVYELDG 59
> bbo:BBOV_II002700 18.m06220; splicing factor, arginine/serine-rich
3; K12890 splicing factor, arginine/serine-rich 1/9
Length=239
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query 16 KVYVGNLDPES-TSSELEEIFRRYGKLSNIWVARNPPG--FAFVTFEDARDARDAVEATD 72
+VYVGNL PES T ++E+ F ++GKL + + +N G FAF+ +EDARDA DA++ D
Sbjct 9 RVYVGNL-PESCTQKDIEDEFGKFGKLISCDLKKNAGGSTFAFLEYEDARDAHDAIKDRD 67
Query 73 G 73
G
Sbjct 68 G 68
> cel:W02B12.2 rsp-2; SR Protein (splicing factor) family member
(rsp-2); K12893 splicing factor, arginine/serine-rich 4/5/6
Length=281
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
+VY+G L ++ ++E FR YGKLS++ + +N GF FV F+D RDA DAV +G
Sbjct 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNG 57
> ath:AT2G43410 FPA; FPA; RNA binding
Length=901
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query 3 KMHRMDDEMTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDAR 62
K R DD ++VG+L PE+T S+L E+F RYG + I V + GFAF+ +
Sbjct 6 KPFRADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVE 64
Query 63 DARDAVEATDG 73
+A A EA G
Sbjct 65 EAVAAKEALQG 75
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDA 67
+ ++VG + P + +LEE F ++GK+ + R AF+ + + DA A
Sbjct 95 KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT-AFIDYYEMDDALQA 146
> dre:405835 MGC77449; zgc:77449; K12890 splicing factor, arginine/serine-rich
1/9
Length=244
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query 11 MTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARN----PPGFAFVTFEDARDARD 66
M+ GR +YVGNL + ++E++F +YGK+ +I + N P FAFV FED RDA D
Sbjct 1 MSDGR-IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIP--FAFVRFEDPRDAED 57
Query 67 AVEATDG 73
AV +G
Sbjct 58 AVFGRNG 64
> ath:AT3G61860 RSP31; RSP31; RNA binding / nucleic acid binding
/ nucleotide binding
Length=264
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query 15 RKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDGI 74
R V+VGN + E+ S+LE +F +YG++ + + G+AFV FED RDA DA+ D
Sbjct 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLDNF 58
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query 17 VYVGNLDPESTSS-ELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEAT 71
++V N DP T ++E+ F YGK++N+ + RN F+FV FE DA A+EAT
Sbjct 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEAT 147
> hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K13195
cold-inducible RNA-binding protein
Length=172
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARN-----PPGFAFVTFEDARDARDAVEA 70
K++VG L ++ LE++F +YG++S + V ++ GF FVTFE+ DA+DA+ A
Sbjct 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query 71 TDG 73
+G
Sbjct 67 MNG 69
> xla:379484 cirbp-b, MGC64461, Xcirp, cirbp, cirp, cirp2, xcirp2;
cold inducible RNA binding protein; K13195 cold-inducible
RNA-binding protein
Length=166
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query 11 MTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARN-----PPGFAFVTFEDARDAR 65
M+ K+++G L+ ++ LE++F +YG++S + V ++ GF FVTFE+ DA+
Sbjct 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query 66 DAVEATDG 73
DA+ A +G
Sbjct 61 DAMMAMNG 68
> mmu:12696 Cirbp, Cirp, R74941; cold inducible RNA binding protein;
K13195 cold-inducible RNA-binding protein
Length=172
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARN-----PPGFAFVTFEDARDARDAVEA 70
K++VG L ++ LE++F +YG++S + V ++ GF FVTFE+ DA+DA+ A
Sbjct 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query 71 TDG 73
+G
Sbjct 67 MNG 69
> tpv:TP04_0313 splicing factor; K12890 splicing factor, arginine/serine-rich
1/9
Length=257
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPG--FAFVTFEDARDARDAVEATDG 73
++Y+GNL + + ELEE F ++G++ + ++ G FAF+ F D+RDARDA+ DG
Sbjct 8 RIYIGNLPEDCSQRELEEEFEKFGRIIYCELKKSYSGSPFAFIEFSDSRDARDAIRDKDG 67
> tgo:TGME49_012190 RNA recognition motif domain containing protein
Length=513
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query 11 MTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARN----PPGFAFVTFEDARDARD 66
+ G KV++GN+ P +T EL EIFR +G+ S + + R+ P G FVTF+ DA
Sbjct 236 LASGVKVFIGNVMPTTTEEELYEIFRSFGECSGLVLLRDRRQRPRGAGFVTFKRKEDADK 295
Query 67 AVEATDGILHREKYCC 82
A++A D K+C
Sbjct 296 AMDALD-----RKFCV 306
> mmu:622469 Gm12966, OTTMUSG00000009528; predicted gene 12966;
K12893 splicing factor, arginine/serine-rich 4/5/6
Length=268
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query 16 KVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARDARDAVEATDG 73
+V++G L+P + ++E F+ YG++ +I + GF FV FED RDA DAV DG
Sbjct 5 RVFIGRLNPAARVKDVERFFKGYGRIRDIDLK---TGFGFVEFEDPRDADDAVYELDG 59
> hsa:10929 SRSF8, SFRS2B, SRP46; serine/arginine-rich splicing
factor 8; K12891 splicing factor, arginine/serine-rich 2
Length=282
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query 19 VGNLDPESTSSELEEIFRRYGKLSNIWVARNP----P-GFAFVTFEDARDARDAVEATDG 73
V NL ++ L +F +YG++ ++++ R P P GFAFV F D RDA+DA A DG
Sbjct 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
> dre:406691 srsf2, hm:zeh0252, sfrs2, wu:fb51a05, wu:fk59b08,
zgc:56283; serine/arginine-rich splicing factor 2; K12891 splicing
factor, arginine/serine-rich 2
Length=225
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query 19 VGNLDPESTSSELEEIFRRYGKLSNIWVARN-----PPGFAFVTFEDARDARDAVEATDG 73
V NL ++ L +F +YG++ ++++ R+ GFAFV F D RDA DA++A DG
Sbjct 18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query 74 IL 75
L
Sbjct 78 AL 79
> ath:AT3G53500 RSZ32; zinc knuckle (CCHC-type) family protein
Length=284
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query 4 MHRMDDEMTHGRKVYVGNLDPESTSSELEEIFRRYGKLSNIWVARNPPGFAFVTFEDARD 63
M R DD + R +YVG L + + +LE +F RYG++ ++ + R+ +AFV F D RD
Sbjct 1 MPRYDDRYGNTR-LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRD 56
Query 64 ARDAVEATDG 73
A DA DG
Sbjct 57 ADDARYYLDG 66
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2067351240
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40